Wall clock time and date at job start Sat Apr 11 2020 07:00:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46495 * 109.47312 * 2 1
4 4 C 1.34779 * 120.00305 * 90.00119 * 3 2 1
5 5 O 1.21268 * 120.00278 * 174.99248 * 4 3 2
6 6 C 1.50706 * 119.99691 * 354.98780 * 4 3 2
7 7 S 1.80998 * 109.47012 * 180.02562 * 6 4 3
8 8 C 1.76198 * 100.00004 * 179.97438 * 7 6 4
9 9 H 1.08003 * 120.00014 * 0.02562 * 8 7 6
10 10 C 1.38805 * 120.00055 * 179.97438 * 8 7 6
11 11 N 1.31632 * 119.99888 * 0.02562 * 10 8 7
12 12 Si 1.86794 * 120.00002 * 179.97438 * 10 8 7
13 13 H 1.48509 * 109.47155 * 60.00155 * 12 10 8
14 14 H 1.48497 * 109.47298 * 180.02562 * 12 10 8
15 15 H 1.48496 * 109.47343 * 300.00267 * 12 10 8
16 16 C 1.39441 * 119.99905 * 269.99914 * 3 2 1
17 17 C 1.39034 * 119.68834 * 274.99481 * 16 3 2
18 18 C 1.38351 * 119.11175 * 179.97438 * 17 16 3
19 19 C 1.38903 * 118.48914 * 0.02562 * 18 17 16
20 20 Br 1.89100 * 120.35683 * 179.97438 * 19 18 17
21 21 C 1.38157 * 119.29109 * 0.02562 * 19 18 17
22 22 N 1.31931 * 120.83424 * 359.72160 * 21 19 18
23 23 H 1.08998 * 109.46875 * 299.99831 * 1 2 3
24 24 H 1.08997 * 109.46785 * 59.99729 * 1 2 3
25 25 H 1.08997 * 109.46890 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47303 * 239.99334 * 2 1 3
27 27 H 1.09002 * 109.47216 * 120.00171 * 2 1 3
28 28 H 1.09004 * 109.46931 * 299.99787 * 6 4 3
29 29 H 1.08998 * 109.46989 * 60.00164 * 6 4 3
30 30 H 0.96997 * 119.99549 * 180.02562 * 11 10 8
31 31 H 1.08006 * 120.43987 * 359.97438 * 17 16 3
32 32 H 1.08004 * 120.75322 * 180.02562 * 18 17 16
33 33 H 1.08004 * 119.58405 * 179.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.2431 2.0165 1.1672
5 8 2.7326 3.1260 1.1692
6 6 1.8858 1.3482 2.4698
7 16 2.3041 2.4468 3.8461
8 6 1.7961 1.4442 5.2031
9 1 1.3737 0.4665 5.0239
10 6 1.9397 1.9106 6.5026
11 7 2.4549 3.1020 6.7211
12 14 1.4004 0.8481 7.9411
13 1 2.1651 -0.4250 7.9303
14 1 1.6575 1.5697 9.2133
15 1 -0.0505 0.5549 7.8235
16 6 2.2508 2.0384 -1.2076
17 6 3.4697 1.8761 -1.8565
18 6 3.6873 2.5334 -3.0543
19 6 2.6738 3.3348 -3.5640
20 35 2.9150 4.2579 -5.1967
21 6 1.4879 3.4511 -2.8648
22 7 1.3077 2.8079 -1.7271
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0276 0.0005
26 1 1.8934 -0.5139 -0.8899
27 1 1.8934 -0.5139 0.8900
28 1 0.8170 1.1349 2.4876
29 1 2.4439 0.4168 2.5653
30 1 2.5556 3.4277 7.6292
31 1 4.2362 1.2452 -1.4312
32 1 4.6241 2.4258 -3.5810
33 1 0.6967 4.0733 -3.2566
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000195524660.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:37
Heat of formation + Delta-G solvation = 13.835044 kcal
Electronic energy + Delta-G solvation = -19015.735825 eV
Core-core repulsion = 15828.619419 eV
Total energy + Delta-G solvation = -3187.116406 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 343.994 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.99452 -39.09561 -35.99845 -33.32495 -32.45338 -32.35048 -30.77999 -29.78450
-28.29966 -25.52550 -24.10425 -23.60253 -23.14093 -20.00107 -17.84722 -17.54085
-17.13091 -16.57970 -16.04776 -15.02351 -14.91896 -14.82325 -14.23022 -14.08163
-13.89601 -13.60294 -13.43903 -13.01113 -12.68185 -12.45009 -12.13898 -11.89514
-11.52530 -11.20122 -11.07054 -11.04592 -10.84478 -10.79528 -10.12475 -10.02165
-9.87287 -9.62542 -9.12220 -9.08028 -8.90170 -8.27627 -6.54128 -6.23768
-3.95314 0.48531 0.87984 1.17354 2.54951 2.87444 3.20230 3.22215
3.27342 3.29130 3.47659 4.17517 4.24643 4.43355 4.54912 4.62377
4.82197 4.87070 5.09372 5.12067 5.25611 5.30016 5.39022 5.50874
5.57020 5.67240 5.71754 5.85689 5.93708 6.00701 6.23492 6.69030
7.24300 7.57005 7.58845 8.32536 8.36947 9.21273 10.83628
Molecular weight = 343.99amu
Principal moments of inertia in cm(-1)
A = 0.030665 B = 0.002357 C = 0.002256
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 912.867512 B =11876.828417 C =12411.109924
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.112 3.888
3 N -0.579 5.579
4 C 0.545 3.455
5 O -0.499 6.499
6 C -0.148 4.148
7 S -0.059 6.059
8 C -0.536 4.536
9 H 0.073 0.927
10 C 0.074 3.926
11 N -0.867 5.867
12 Si 0.919 3.081
13 H -0.274 1.274
14 H -0.283 1.283
15 H -0.274 1.274
16 C 0.381 3.619
17 C -0.151 4.151
18 C -0.038 4.038
19 C -0.152 4.152
20 Br -0.035 7.035
21 C 0.149 3.851
22 N -0.471 5.471
23 H 0.066 0.934
24 H 0.060 0.940
25 H 0.068 0.932
26 H 0.077 0.923
27 H 0.093 0.907
28 H 0.096 0.904
29 H 0.093 0.907
30 H 0.269 0.731
31 H 0.148 0.852
32 H 0.149 0.851
33 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.163 -4.827 -25.688 26.138
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.010 4.010
3 N -0.315 5.315
4 C 0.333 3.667
5 O -0.370 6.370
6 C -0.298 4.298
7 S 0.167 5.833
8 C -0.684 4.684
9 H 0.091 0.909
10 C -0.135 4.135
11 N -0.502 5.502
12 Si 0.745 3.255
13 H -0.199 1.199
14 H -0.208 1.208
15 H -0.199 1.199
16 C 0.155 3.845
17 C -0.174 4.174
18 C -0.066 4.066
19 C -0.234 4.234
20 Br 0.049 6.951
21 C -0.011 4.011
22 N -0.182 5.182
23 H 0.085 0.915
24 H 0.079 0.921
25 H 0.087 0.913
26 H 0.096 0.904
27 H 0.112 0.888
28 H 0.114 0.886
29 H 0.111 0.889
30 H 0.079 0.921
31 H 0.165 0.835
32 H 0.166 0.834
33 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges 0.241 -2.609 -25.649 25.782
hybrid contribution -0.258 -2.223 0.832 2.388
sum -0.017 -4.832 -24.817 25.283
Atomic orbital electron populations
1.22233 0.95237 1.02293 1.03407 1.21682 0.95221 0.80396 1.03697
1.45612 1.68930 1.14393 1.02603 1.20516 0.76672 0.85571 0.83908
1.90732 1.40747 1.19150 1.86376 1.23598 1.04986 1.04833 0.96382
1.85461 1.82235 1.22168 0.93396 1.22803 1.48524 1.04854 0.92219
0.90870 1.24995 0.94749 0.95423 0.98368 1.70007 1.41529 1.16884
1.21817 0.86216 0.79156 0.79840 0.80245 1.19905 1.20809 1.19902
1.18265 0.88847 0.90417 0.86963 1.22195 0.97833 1.01794 0.95562
1.21479 0.98164 0.92562 0.94393 1.22958 0.99336 1.04153 0.96919
1.96744 1.97485 1.75172 1.25664 1.22664 0.94756 0.94856 0.88853
1.67532 1.33050 1.06875 1.10778 0.91546 0.92067 0.91346 0.90434
0.88849 0.88632 0.88860 0.92080 0.83455 0.83356 0.81555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16
2 C 0.11 1.21 5.88 -4.04 -0.02 1.18 16
3 N -0.58 -8.60 2.57 -115.37 -0.30 -8.89 16
4 C 0.54 10.51 7.65 -10.98 -0.08 10.43 16
5 O -0.50 -11.71 15.84 5.57 0.09 -11.62 16
6 C -0.15 -2.94 4.83 36.01 0.17 -2.77 16
7 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16
8 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16
9 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
10 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16
11 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16
12 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16
13 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16
14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
16 C 0.38 5.45 5.45 -154.68 -0.84 4.61 16
17 C -0.15 -1.73 10.02 -39.24 -0.39 -2.13 16
18 C -0.04 -0.37 9.93 -39.29 -0.39 -0.76 16
19 C -0.15 -1.56 6.25 -39.36 -0.25 -1.80 16
20 Br -0.04 -0.30 33.73 -68.01 -2.29 -2.59 16
21 C 0.15 1.73 10.93 -17.54 -0.19 1.54 16
22 N -0.47 -6.89 10.39 -12.34 -0.13 -7.02 16
23 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16
24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16
27 H 0.09 0.93 6.48 -51.93 -0.34 0.60 16
28 H 0.10 1.78 6.94 -51.91 -0.36 1.42 16
29 H 0.09 1.65 7.25 -51.92 -0.38 1.28 16
30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
31 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16
32 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16
33 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16
LS Contribution 325.59 15.07 4.91 4.91
Total: -1.00 -34.53 325.59 -9.15 -43.69
By element:
Atomic # 1 Polarization: 1.85 SS G_CDS: -3.51 Total: -1.66 kcal
Atomic # 6 Polarization: -2.46 SS G_CDS: -1.42 Total: -3.88 kcal
Atomic # 7 Polarization: -41.47 SS G_CDS: 0.31 Total: -41.16 kcal
Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal
Atomic # 35 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.59 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -34.53 -9.15 -43.69 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195524660.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.523 kcal
(2) G-P(sol) polarization free energy of solvation -34.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.989 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds