Wall clock time and date at job start Sat Apr 11 2020 07:00:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46495 * 109.47312 * 2 1
4 4 C 1.34779 * 120.00305 * 90.00119 * 3 2 1
5 5 O 1.21268 * 120.00278 * 174.99248 * 4 3 2
6 6 C 1.50706 * 119.99691 * 354.98780 * 4 3 2
7 7 S 1.80998 * 109.47012 * 180.02562 * 6 4 3
8 8 C 1.76198 * 100.00004 * 179.97438 * 7 6 4
9 9 H 1.08003 * 120.00014 * 0.02562 * 8 7 6
10 10 C 1.38805 * 120.00055 * 179.97438 * 8 7 6
11 11 N 1.31632 * 119.99888 * 0.02562 * 10 8 7
12 12 Si 1.86794 * 120.00002 * 179.97438 * 10 8 7
13 13 H 1.48509 * 109.47155 * 60.00155 * 12 10 8
14 14 H 1.48497 * 109.47298 * 180.02562 * 12 10 8
15 15 H 1.48496 * 109.47343 * 300.00267 * 12 10 8
16 16 C 1.39441 * 119.99905 * 269.99914 * 3 2 1
17 17 C 1.39034 * 119.68834 * 274.99481 * 16 3 2
18 18 C 1.38351 * 119.11175 * 179.97438 * 17 16 3
19 19 C 1.38903 * 118.48914 * 0.02562 * 18 17 16
20 20 Br 1.89100 * 120.35683 * 179.97438 * 19 18 17
21 21 C 1.38157 * 119.29109 * 0.02562 * 19 18 17
22 22 N 1.31931 * 120.83424 * 359.72160 * 21 19 18
23 23 H 1.08998 * 109.46875 * 299.99831 * 1 2 3
24 24 H 1.08997 * 109.46785 * 59.99729 * 1 2 3
25 25 H 1.08997 * 109.46890 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47303 * 239.99334 * 2 1 3
27 27 H 1.09002 * 109.47216 * 120.00171 * 2 1 3
28 28 H 1.09004 * 109.46931 * 299.99787 * 6 4 3
29 29 H 1.08998 * 109.46989 * 60.00164 * 6 4 3
30 30 H 0.96997 * 119.99549 * 180.02562 * 11 10 8
31 31 H 1.08006 * 120.43987 * 359.97438 * 17 16 3
32 32 H 1.08004 * 120.75322 * 180.02562 * 18 17 16
33 33 H 1.08004 * 119.58405 * 179.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.2431 2.0165 1.1672
5 8 2.7326 3.1260 1.1692
6 6 1.8858 1.3482 2.4698
7 16 2.3041 2.4468 3.8461
8 6 1.7961 1.4442 5.2031
9 1 1.3737 0.4665 5.0239
10 6 1.9397 1.9106 6.5026
11 7 2.4549 3.1020 6.7211
12 14 1.4004 0.8481 7.9411
13 1 2.1651 -0.4250 7.9303
14 1 1.6575 1.5697 9.2133
15 1 -0.0505 0.5549 7.8235
16 6 2.2508 2.0384 -1.2076
17 6 3.4697 1.8761 -1.8565
18 6 3.6873 2.5334 -3.0543
19 6 2.6738 3.3348 -3.5640
20 35 2.9150 4.2579 -5.1967
21 6 1.4879 3.4511 -2.8648
22 7 1.3077 2.8079 -1.7271
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 -1.0276 0.0005
26 1 1.8934 -0.5139 -0.8899
27 1 1.8934 -0.5139 0.8900
28 1 0.8170 1.1349 2.4876
29 1 2.4439 0.4168 2.5653
30 1 2.5556 3.4277 7.6292
31 1 4.2362 1.2452 -1.4312
32 1 4.6241 2.4258 -3.5810
33 1 0.6967 4.0733 -3.2566
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000195524660.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:36
Heat of formation + Delta-G solvation = -7.771084 kcal
Electronic energy + Delta-G solvation = -19016.672737 eV
Core-core repulsion = 15828.619419 eV
Total energy + Delta-G solvation = -3188.053318 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 343.994 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.05779 -40.33145 -37.25571 -34.58157 -34.20668 -33.25206 -31.67572 -31.17935
-29.39045 -27.66693 -25.00667 -24.52781 -24.23030 -21.21667 -19.72285 -18.80270
-18.10412 -17.87080 -16.98934 -16.87223 -16.34383 -16.23520 -15.63457 -15.22941
-14.96455 -14.72072 -14.50516 -14.39516 -14.07485 -13.57599 -13.31695 -13.18919
-12.86795 -12.80913 -12.64572 -12.35898 -12.09764 -11.76587 -11.62157 -11.18839
-11.11809 -10.97989 -10.90650 -10.29482 -10.12845 -9.91341 -8.68734 -8.34145
-6.13192 -0.42633 0.03308 0.37336 1.15488 1.35900 1.43812 1.45358
1.54377 1.84327 2.27060 2.38273 3.00305 3.18734 3.37759 3.62736
3.66699 3.76606 3.79965 3.98328 4.13278 4.29666 4.42764 4.44062
4.51227 4.55425 4.76637 4.83117 4.89429 5.09984 5.31933 5.42432
5.62890 5.99019 6.20356 6.64425 6.96985 7.07042 8.74938
Molecular weight = 343.99amu
Principal moments of inertia in cm(-1)
A = 0.030665 B = 0.002357 C = 0.002256
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 912.867512 B =11876.828417 C =12411.109924
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.103 3.897
3 N -0.565 5.565
4 C 0.546 3.454
5 O -0.552 6.552
6 C -0.120 4.120
7 S -0.152 6.152
8 C -0.544 4.544
9 H 0.086 0.914
10 C 0.013 3.987
11 N -0.912 5.912
12 Si 0.999 3.001
13 H -0.259 1.259
14 H -0.281 1.281
15 H -0.262 1.262
16 C 0.348 3.652
17 C -0.151 4.151
18 C -0.030 4.030
19 C -0.150 4.150
20 Br -0.014 7.014
21 C 0.139 3.861
22 N -0.505 5.505
23 H 0.043 0.957
24 H 0.050 0.950
25 H 0.097 0.903
26 H 0.109 0.891
27 H 0.104 0.896
28 H 0.110 0.890
29 H 0.120 0.880
30 H 0.271 0.729
31 H 0.165 0.835
32 H 0.181 0.819
33 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.100 -7.125 -27.070 27.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.018 4.018
3 N -0.299 5.299
4 C 0.334 3.666
5 O -0.428 6.428
6 C -0.271 4.271
7 S 0.075 5.925
8 C -0.692 4.692
9 H 0.104 0.896
10 C -0.191 4.191
11 N -0.549 5.549
12 Si 0.820 3.180
13 H -0.184 1.184
14 H -0.206 1.206
15 H -0.187 1.187
16 C 0.123 3.877
17 C -0.173 4.173
18 C -0.058 4.058
19 C -0.231 4.231
20 Br 0.071 6.929
21 C -0.022 4.022
22 N -0.216 5.216
23 H 0.062 0.938
24 H 0.069 0.931
25 H 0.115 0.885
26 H 0.127 0.873
27 H 0.123 0.877
28 H 0.128 0.872
29 H 0.138 0.862
30 H 0.080 0.920
31 H 0.182 0.818
32 H 0.198 0.802
33 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 0.160 -4.955 -27.084 27.534
hybrid contribution -0.251 -1.496 1.007 1.820
sum -0.091 -6.450 -26.078 26.864
Atomic orbital electron populations
1.22182 0.95024 1.03647 1.01759 1.22061 0.95399 0.78486 1.05820
1.45483 1.67334 1.15372 1.01719 1.20333 0.76374 0.84917 0.84928
1.90704 1.43523 1.21333 1.87230 1.23399 1.06042 1.03733 0.93904
1.85659 1.83100 1.26301 0.97402 1.23155 1.48341 1.05156 0.92515
0.89579 1.26141 0.94520 0.96791 1.01688 1.70183 1.43075 1.19099
1.22522 0.84997 0.79171 0.78000 0.75801 1.18367 1.20579 1.18703
1.18510 0.90201 0.91862 0.87152 1.22363 0.96944 1.02057 0.95983
1.21855 0.99055 0.91217 0.93659 1.23105 0.98888 1.03710 0.97431
1.96774 1.97361 1.74738 1.24045 1.22970 0.95980 0.94834 0.88372
1.67424 1.34138 1.07828 1.12255 0.93778 0.93060 0.88453 0.87276
0.87749 0.87231 0.86202 0.92008 0.81776 0.80194 0.80013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.27 10.24 71.98 0.74 -2.53 16
2 C 0.10 1.98 5.88 86.38 0.51 2.49 16
3 N -0.57 -16.34 2.57 -637.32 -1.64 -17.98 16
4 C 0.55 21.26 7.65 87.66 0.67 21.93 16
5 O -0.55 -26.86 15.84 -2.99 -0.05 -26.91 16
6 C -0.12 -4.77 4.83 71.24 0.34 -4.43 16
7 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16
8 C -0.54 -30.67 9.50 67.96 0.65 -30.03 16
9 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16
10 C 0.01 0.75 5.49 84.86 0.47 1.22 16
11 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16
12 Si 1.00 43.10 29.55 68.60 2.03 45.13 16
13 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16
14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
16 C 0.35 9.71 5.45 132.91 0.72 10.43 16
17 C -0.15 -3.21 10.02 22.49 0.23 -2.99 16
18 C -0.03 -0.52 9.93 22.46 0.22 -0.30 16
19 C -0.15 -2.80 6.25 22.41 0.14 -2.66 16
20 Br -0.01 -0.21 33.73 -20.37 -0.69 -0.89 16
21 C 0.14 3.12 10.93 84.66 0.93 4.05 16
22 N -0.50 -14.69 10.39 -192.95 -2.00 -16.69 16
23 H 0.04 1.05 6.94 -2.39 -0.02 1.03 16
24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
25 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
26 H 0.11 1.47 8.05 -2.39 -0.02 1.45 16
27 H 0.10 1.79 6.48 -2.39 -0.02 1.78 16
28 H 0.11 4.04 6.94 -2.39 -0.02 4.02 16
29 H 0.12 4.09 7.25 -2.40 -0.02 4.07 16
30 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16
31 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16
32 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16
33 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16
Total: -1.00 -78.24 325.59 3.51 -74.72
By element:
Atomic # 1 Polarization: 9.61 SS G_CDS: 1.13 Total: 10.74 kcal
Atomic # 6 Polarization: -8.42 SS G_CDS: 5.61 Total: -2.81 kcal
Atomic # 7 Polarization: -87.02 SS G_CDS: -3.36 Total: -90.38 kcal
Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.91 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal
Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.89 kcal
Total: -78.24 3.51 -74.72 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195524660.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.952 kcal
(2) G-P(sol) polarization free energy of solvation -78.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.285 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds