Wall clock time and date at job start Sat Apr 11 2020 07:02:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86799 * 120.00106 * 2 1
4 4 H 1.48492 * 109.47286 * 270.00414 * 3 2 1
5 5 H 1.48506 * 109.46958 * 30.00600 * 3 2 1
6 6 H 1.48505 * 109.46889 * 150.00197 * 3 2 1
7 7 C 1.37872 * 119.99636 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00082 * 179.97438 * 7 2 1
9 9 S 1.76203 * 120.00286 * 359.97438 * 7 2 1
10 10 O 1.42096 * 106.40261 * 66.46089 * 9 7 2
11 11 O 1.42104 * 106.40031 * 293.54129 * 9 7 2
12 12 N 1.65607 * 107.21737 * 180.02562 * 9 7 2
13 13 C 1.47259 * 121.35186 * 90.00233 * 12 9 7
14 14 C 1.52995 * 108.18893 * 118.47248 * 13 12 9
15 15 N 1.45647 * 110.76355 * 46.73944 * 14 13 12
16 16 C 1.33380 * 124.59298 * 338.05792 * 15 14 13
17 17 O 1.21280 * 118.49315 * 184.34065 * 16 15 14
18 18 C 1.47046 * 121.35127 * 269.97589 * 12 9 7
19 19 H 1.09002 * 109.57159 * 342.57988 * 18 12 9
20 20 C 1.50698 * 109.56969 * 102.81801 * 18 12 9
21 21 C 1.38237 * 119.98781 * 243.32690 * 20 18 12
22 22 C 1.38221 * 120.00988 * 179.72495 * 21 20 18
23 23 C 1.38352 * 119.98593 * 0.54399 * 22 21 20
24 24 Cl 1.73597 * 120.01366 * 179.70335 * 23 22 21
25 25 C 1.38352 * 119.97216 * 359.73251 * 23 22 21
26 26 C 1.38213 * 119.99108 * 359.97438 * 25 23 22
27 27 H 0.97006 * 119.99732 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.72145 * 238.14145 * 13 12 9
29 29 H 1.09002 * 109.72568 * 358.79861 * 13 12 9
30 30 H 1.09005 * 109.21616 * 167.05288 * 14 13 12
31 31 H 1.08991 * 109.21420 * 286.39304 * 14 13 12
32 32 H 0.97010 * 117.70490 * 158.08207 * 15 14 13
33 33 H 1.07995 * 119.99475 * 359.97438 * 21 20 18
34 34 H 1.07999 * 120.00760 * 180.27063 * 22 21 20
35 35 H 1.08000 * 120.00304 * 179.97438 * 25 23 22
36 36 H 1.07998 * 119.99458 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4467 2.6526 0.7002
6 1 3.5468 1.4400 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0844 -1.1941 -0.0010
9 16 1.1234 -2.7200 -0.0005
10 8 0.4509 -2.7950 -1.2500
11 8 0.4518 -2.7955 1.2495
12 7 2.2483 -3.9355 -0.0005
13 6 2.7686 -4.4978 1.2570
14 6 2.4016 -5.9823 1.3043
15 7 2.7097 -6.6310 0.0372
16 6 2.8365 -5.9947 -1.1282
17 8 3.0161 -6.6534 -2.1305
18 6 2.7675 -4.4973 -1.2563
19 1 2.1022 -4.2316 -2.0778
20 6 4.1447 -3.9472 -1.5240
21 6 4.3719 -3.1678 -2.6429
22 6 5.6335 -2.6582 -2.8859
23 6 6.6717 -2.9378 -2.0151
24 17 8.2583 -2.3046 -2.3238
25 6 6.4449 -3.7227 -0.8986
26 6 5.1815 -4.2267 -0.6534
27 1 -0.4850 0.8401 0.0004
28 1 3.8524 -4.3858 1.2894
29 1 2.3194 -3.9808 2.1050
30 1 2.9660 -6.4663 2.1015
31 1 1.3356 -6.0819 1.5088
32 1 2.8309 -7.5935 0.0410
33 1 3.5625 -2.9535 -3.3250
34 1 5.8100 -2.0457 -3.7577
35 1 7.2551 -3.9416 -0.2188
36 1 5.0044 -4.8390 0.2184
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192973196.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:15
Heat of formation + Delta-G solvation = -93.973484 kcal
Electronic energy + Delta-G solvation = -26629.170721 eV
Core-core repulsion = 22651.807072 eV
Total energy + Delta-G solvation = -3977.363649 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 344.043 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.61767 -38.83912 -36.73356 -36.37391 -35.49067 -34.17274 -34.09396 -33.16367
-31.33180 -30.98570 -29.05652 -26.27813 -25.84104 -23.84877 -22.60204 -21.93349
-19.46745 -18.93127 -18.02176 -17.08547 -16.87847 -16.62766 -16.20433 -15.71184
-15.66008 -15.07375 -14.93710 -14.33571 -14.16572 -13.84070 -13.69433 -13.50476
-13.34996 -12.96554 -12.60081 -12.28697 -12.11755 -11.74330 -11.73179 -11.45355
-11.37531 -11.27980 -11.22790 -10.85460 -10.73137 -10.65905 -10.48260 -10.29935
-9.99900 -9.32687 -9.19211 -9.02911 -8.96386 -8.56557 -8.50537 -6.79194
-5.41952 1.09869 1.36104 1.99054 2.11948 2.65591 3.01959 3.09055
3.15167 3.22671 3.68495 3.96782 4.26464 4.52588 4.58958 4.71816
4.84727 4.89210 4.94260 5.14445 5.20766 5.33760 5.42644 5.56396
5.68224 5.71912 5.74943 5.88147 6.00596 6.05023 6.20965 6.26162
6.32436 6.58864 6.73629 6.81337 7.16183 7.24069 7.30309 7.89507
8.22418 8.80684 10.14788
Molecular weight = 344.04amu
Principal moments of inertia in cm(-1)
A = 0.008788 B = 0.006396 C = 0.004193
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3185.423707 B = 4376.444452 C = 6676.819820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.845 5.845
2 C 0.135 3.865
3 Si 0.918 3.082
4 H -0.266 1.266
5 H -0.274 1.274
6 H -0.261 1.261
7 C -1.013 5.013
8 H 0.104 0.896
9 S 2.709 3.291
10 O -0.997 6.997
11 O -0.995 6.995
12 N -1.005 6.005
13 C 0.098 3.902
14 C 0.094 3.906
15 N -0.715 5.715
16 C 0.529 3.471
17 O -0.546 6.546
18 C 0.182 3.818
19 H 0.141 0.859
20 C -0.076 4.076
21 C -0.076 4.076
22 C -0.108 4.108
23 C -0.031 4.031
24 Cl -0.079 7.079
25 C -0.113 4.113
26 C -0.094 4.094
27 H 0.292 0.708
28 H 0.076 0.924
29 H 0.116 0.884
30 H 0.087 0.913
31 H 0.074 0.926
32 H 0.398 0.602
33 H 0.142 0.858
34 H 0.136 0.864
35 H 0.132 0.868
36 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.547 -7.821 1.295 14.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.475 5.475
2 C -0.083 4.083
3 Si 0.742 3.258
4 H -0.191 1.191
5 H -0.199 1.199
6 H -0.185 1.185
7 C -1.147 5.147
8 H 0.123 0.877
9 S 2.811 3.189
10 O -0.987 6.987
11 O -0.986 6.986
12 N -0.838 5.838
13 C -0.028 4.028
14 C -0.032 4.032
15 N -0.367 5.367
16 C 0.313 3.687
17 O -0.423 6.423
18 C 0.072 3.928
19 H 0.159 0.841
20 C -0.079 4.079
21 C -0.095 4.095
22 C -0.127 4.127
23 C -0.058 4.058
24 Cl -0.050 7.050
25 C -0.132 4.132
26 C -0.112 4.112
27 H 0.102 0.898
28 H 0.094 0.906
29 H 0.134 0.866
30 H 0.105 0.895
31 H 0.093 0.907
32 H 0.233 0.767
33 H 0.160 0.840
34 H 0.154 0.846
35 H 0.150 0.850
36 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 10.580 -7.926 0.770 13.242
hybrid contribution 1.140 1.035 0.181 1.550
sum 11.720 -6.892 0.950 13.629
Atomic orbital electron populations
1.69889 1.06777 1.30901 1.39938 1.24727 0.94430 1.00766 0.88398
0.86189 0.80241 0.80016 0.79372 1.19063 1.19934 1.18544 1.30486
1.06159 1.11130 1.66965 0.87728 1.00817 0.71996 0.73012 0.73059
1.93366 1.72424 1.87310 1.45633 1.93366 1.72300 1.87375 1.45544
1.58776 1.61419 1.55195 1.08401 1.21807 1.00447 0.92363 0.88196
1.21839 1.02040 0.94383 0.84964 1.45281 1.71992 1.11387 1.08000
1.20068 0.75268 0.90395 0.82934 1.90750 1.49626 1.66660 1.35281
1.19846 0.93959 0.88844 0.90187 0.84112 1.19870 0.94235 0.98372
0.95415 1.21128 0.96752 0.95030 0.96557 1.21024 0.91664 1.00447
0.99543 1.20928 0.86462 1.00501 0.97887 1.98353 1.25068 1.85968
1.95638 1.20932 0.97611 0.98066 0.96545 1.21079 0.91663 0.99604
0.98895 0.89762 0.90561 0.86580 0.89486 0.90746 0.76702 0.84049
0.84648 0.85011 0.84948
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -23.86 13.19 55.43 0.73 -23.13 16
2 C 0.14 3.60 5.46 -17.82 -0.10 3.50 16
3 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 16
4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16
5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16
7 C -1.01 -26.22 9.75 30.60 0.30 -25.92 16
8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16
9 S 2.71 67.00 5.04 -107.50 -0.54 66.46 16
10 O -1.00 -27.43 16.68 -57.17 -0.95 -28.39 16
11 O -1.00 -26.67 16.75 -57.17 -0.96 -27.63 16
12 N -1.00 -18.48 2.93 -108.95 -0.32 -18.80 16
13 C 0.10 1.36 6.07 -3.63 -0.02 1.34 16
14 C 0.09 1.02 7.34 -4.50 -0.03 0.98 16
15 N -0.71 -8.84 5.42 -61.32 -0.33 -9.17 16
16 C 0.53 8.56 6.57 -11.73 -0.08 8.49 16
17 O -0.55 -10.25 17.80 5.56 0.10 -10.15 16
18 C 0.18 3.17 2.89 -70.06 -0.20 2.97 16
19 H 0.14 2.65 6.73 -51.93 -0.35 2.31 16
20 C -0.08 -1.22 5.01 -104.62 -0.52 -1.74 16
21 C -0.08 -1.17 9.67 -39.59 -0.38 -1.55 16
22 C -0.11 -1.50 9.83 -39.55 -0.39 -1.89 16
23 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16
24 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16
25 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16
26 C -0.09 -1.29 8.31 -39.59 -0.33 -1.62 16
27 H 0.29 7.43 8.31 -40.82 -0.34 7.09 16
28 H 0.08 0.89 5.10 -51.93 -0.26 0.62 16
29 H 0.12 1.66 7.11 -51.93 -0.37 1.29 16
30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.40 4.01 8.80 -40.82 -0.36 3.65 16
33 H 0.14 2.05 7.95 -52.49 -0.42 1.64 16
34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16
35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16
36 H 0.13 1.55 5.59 -52.49 -0.29 1.26 16
LS Contribution 334.45 15.07 5.04 5.04
Total: -1.00 -34.79 334.45 -9.44 -44.23
By element:
Atomic # 1 Polarization: 10.31 SS G_CDS: -3.29 Total: 7.02 kcal
Atomic # 6 Polarization: -15.55 SS G_CDS: -2.40 Total: -17.94 kcal
Atomic # 7 Polarization: -51.18 SS G_CDS: 0.08 Total: -51.10 kcal
Atomic # 8 Polarization: -64.36 SS G_CDS: -1.81 Total: -66.17 kcal
Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal
Atomic # 16 Polarization: 67.00 SS G_CDS: -0.54 Total: 66.46 kcal
Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -34.79 -9.44 -44.23 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192973196.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.744 kcal
(2) G-P(sol) polarization free energy of solvation -34.787 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds