Wall clock time and date at job start Sat Apr 11 2020 07:01:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.35653 * 125.68332 * 2 1
4 4 C 1.35540 * 108.86799 * 180.26948 * 3 2 1
5 5 Br 1.89099 * 126.06443 * 179.71966 * 4 3 2
6 6 C 1.39843 * 107.86972 * 359.74974 * 4 3 2
7 7 C 1.37663 * 125.68065 * 179.84141 * 2 1 3
8 8 C 1.46544 * 126.23096 * 0.02562 * 7 2 1
9 9 O 1.21737 * 120.00196 * 6.27992 * 8 7 2
10 10 N 1.34779 * 120.00061 * 186.27786 * 8 7 2
11 11 C 1.36879 * 119.99909 * 5.68969 * 10 8 7
12 12 H 1.08001 * 119.99691 * 48.97053 * 11 10 8
13 13 C 1.39003 * 120.00314 * 228.97264 * 11 10 8
14 14 N 1.31402 * 119.99819 * 355.86868 * 13 11 10
15 15 Si 1.86793 * 120.00158 * 175.86741 * 13 11 10
16 16 H 1.48501 * 109.47188 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47307 * 119.99986 * 15 13 11
18 18 H 1.48504 * 109.47362 * 239.99828 * 15 13 11
19 19 C 1.46501 * 120.00036 * 185.69429 * 10 8 7
20 20 C 1.53005 * 109.46707 * 265.37618 * 19 10 8
21 21 C 1.50695 * 109.46711 * 180.02562 * 20 19 10
22 22 O 1.20829 * 120.00402 * 359.97438 * 21 20 19
23 23 O 1.34239 * 119.99873 * 180.02562 * 21 20 19
24 24 H 1.08997 * 109.46742 * 273.98273 * 1 2 3
25 25 H 1.09003 * 109.46912 * 33.98399 * 1 2 3
26 26 H 1.08998 * 109.47207 * 153.98010 * 1 2 3
27 27 H 1.08007 * 125.56416 * 0.02562 * 3 2 1
28 28 H 1.07999 * 126.46082 * 179.97438 * 6 4 3
29 29 H 0.96998 * 119.99618 * 180.02562 * 14 13 11
30 30 H 1.08995 * 109.47153 * 25.37170 * 19 10 8
31 31 H 1.09003 * 109.46764 * 145.37920 * 19 10 8
32 32 H 1.08995 * 109.46948 * 299.99677 * 20 19 10
33 33 H 1.08996 * 109.47174 * 59.99918 * 20 19 10
34 34 H 0.96702 * 116.99857 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2563 1.1018 0.0000
4 6 3.5538 0.7098 -0.0060
5 35 5.0615 1.8510 -0.0161
6 6 3.5795 -0.6884 -0.0042
7 6 2.2680 -1.1182 0.0031
8 6 1.8130 -2.5112 0.0064
9 8 0.6279 -2.7648 -0.1087
10 7 2.7066 -3.5117 0.1369
11 6 4.0225 -3.2263 0.3828
12 1 4.2872 -2.5347 1.1689
13 6 5.0181 -3.8265 -0.3793
14 7 4.7015 -4.7285 -1.2808
15 14 6.8060 -3.3507 -0.1219
16 1 6.8956 -2.3202 0.9436
17 1 7.5841 -4.5495 0.2815
18 1 7.3598 -2.8037 -1.3866
19 6 2.2695 -4.9047 0.0154
20 6 1.9714 -5.4687 1.4062
21 6 1.5224 -6.9018 1.2813
22 8 1.4479 -7.4189 0.1918
23 8 1.2042 -7.6036 2.3804
24 1 -0.3633 0.0714 1.0252
25 1 -0.3633 0.8522 -0.5744
26 1 -0.3633 -0.9235 -0.4508
27 1 1.9091 2.1246 0.0004
28 1 4.4598 -1.3141 -0.0081
29 1 5.3963 -5.1476 -1.8123
30 1 1.3684 -4.9508 -0.5961
31 1 3.0578 -5.4932 -0.4540
32 1 2.8725 -5.4227 2.0176
33 1 1.1832 -4.8802 1.8756
34 1 0.9212 -8.5191 2.2501
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001600927194.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:15
Heat of formation + Delta-G solvation = -63.834825 kcal
Electronic energy + Delta-G solvation = -22376.816008 eV
Core-core repulsion = 18743.578713 eV
Total energy + Delta-G solvation = -3633.237295 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 344.020 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-40.81191 -39.79687 -38.19417 -35.79891 -35.16313 -32.73088 -32.06629 -31.05626
-29.97836 -28.18816 -25.97610 -25.21895 -24.18111 -21.43290 -20.30016 -19.65043
-19.05415 -17.81076 -17.48353 -16.16197 -15.86746 -15.60604 -15.33672 -15.00165
-14.44244 -14.30462 -13.63280 -13.08405 -13.04018 -12.80922 -12.67018 -12.51448
-12.20231 -12.11788 -11.80498 -11.54114 -11.26296 -11.14900 -11.08841 -10.72671
-10.40062 -10.37479 -10.11399 -10.06616 -9.78529 -9.14011 -8.73555 -8.02766
-7.73625 -7.51793 -6.43103 -4.34843 2.16984 2.22428 2.67753 3.02952
3.11136 3.19393 3.21253 3.30550 3.51448 4.00743 4.32846 4.72513
4.88309 5.18427 5.27788 5.52374 5.60130 5.79412 5.86165 5.92036
5.97797 6.08033 6.33999 6.50965 6.70588 6.82374 6.88645 7.19473
7.23624 7.50234 7.52894 7.64943 7.82091 8.23939 8.31291 8.90726
9.26297 9.70507 10.51854
Molecular weight = 344.02amu
Principal moments of inertia in cm(-1)
A = 0.013680 B = 0.004446 C = 0.003537
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2046.226571 B = 6295.808715 C = 7914.863525
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.415 5.415
3 C 0.026 3.974
4 C -0.185 4.185
5 Br -0.054 7.054
6 C -0.106 4.106
7 C -0.006 4.006
8 C 0.543 3.457
9 O -0.610 6.610
10 N -0.420 5.420
11 C -0.348 4.348
12 H 0.100 0.900
13 C 0.052 3.948
14 N -0.855 5.855
15 Si 0.906 3.094
16 H -0.258 1.258
17 H -0.278 1.278
18 H -0.273 1.273
19 C 0.118 3.882
20 C -0.122 4.122
21 C 0.483 3.517
22 O -0.514 6.514
23 O -0.525 6.525
24 H 0.069 0.931
25 H 0.073 0.927
26 H 0.112 0.888
27 H 0.165 0.835
28 H 0.183 0.817
29 H 0.274 0.726
30 H 0.064 0.936
31 H 0.132 0.868
32 H 0.106 0.894
33 H 0.093 0.907
34 H 0.401 0.599
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.622 7.839 4.587 9.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.089 5.089
3 C -0.112 4.112
4 C -0.272 4.272
5 Br 0.030 6.970
6 C -0.132 4.132
7 C -0.118 4.118
8 C 0.334 3.666
9 O -0.498 6.498
10 N -0.137 5.137
11 C -0.475 4.475
12 H 0.117 0.883
13 C -0.155 4.155
14 N -0.490 5.490
15 Si 0.730 3.270
16 H -0.182 1.182
17 H -0.203 1.203
18 H -0.198 1.198
19 C -0.005 4.005
20 C -0.161 4.161
21 C 0.326 3.674
22 O -0.402 6.402
23 O -0.337 6.337
24 H 0.087 0.913
25 H 0.092 0.908
26 H 0.130 0.870
27 H 0.183 0.817
28 H 0.200 0.800
29 H 0.085 0.915
30 H 0.083 0.917
31 H 0.149 0.851
32 H 0.124 0.876
33 H 0.112 0.888
34 H 0.258 0.742
Dipole moment (debyes) X Y Z Total
from point charges -1.829 8.184 4.120 9.343
hybrid contribution 0.385 -0.553 0.017 0.674
sum -1.444 7.631 4.137 8.800
Atomic orbital electron populations
1.22262 0.76450 1.05585 1.03076 1.43882 1.06538 1.05025 1.53423
1.21553 0.89208 0.91572 1.08908 1.21052 0.90639 0.94898 1.20589
1.96461 1.38572 1.63527 1.98469 1.22560 0.97773 0.91421 1.01443
1.20286 0.89362 0.87883 1.14312 1.17196 0.85598 0.83670 0.80171
1.90606 1.16891 1.84785 1.57521 1.42944 1.07298 1.02816 1.60607
1.19608 0.80532 1.29789 1.17618 0.88273 1.25620 1.00523 0.95216
0.94174 1.69604 1.34422 1.23811 1.21185 0.86175 0.82185 0.79227
0.79367 1.18178 1.20339 1.19848 1.21548 1.02673 0.84224 0.92060
1.21819 1.03238 0.87144 1.03871 1.23791 0.72768 0.89658 0.81221
1.90702 1.49500 1.71461 1.28502 1.84596 1.79520 1.30225 1.39350
0.91261 0.90794 0.86975 0.81744 0.79983 0.91464 0.91739 0.85071
0.87572 0.88829 0.74172
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.97 10.76 59.85 0.64 1.61 16
2 N -0.41 -7.38 3.17 -120.17 -0.38 -7.76 16
3 C 0.03 0.41 11.35 -16.83 -0.19 0.22 16
4 C -0.19 -3.31 6.53 -39.95 -0.26 -3.58 16
5 Br -0.05 -0.84 34.08 -68.01 -2.32 -3.15 16
6 C -0.11 -2.20 9.02 -39.06 -0.35 -2.55 16
7 C -0.01 -0.12 6.78 -81.98 -0.56 -0.67 16
8 C 0.54 12.85 7.58 -12.91 -0.10 12.75 16
9 O -0.61 -14.95 14.14 5.16 0.07 -14.88 16
10 N -0.42 -9.99 2.50 -116.34 -0.29 -10.28 16
11 C -0.35 -8.13 6.18 -15.02 -0.09 -8.23 16
12 H 0.10 2.26 6.28 -52.49 -0.33 1.93 16
13 C 0.05 1.24 5.34 -17.45 -0.09 1.14 16
14 N -0.86 -21.50 10.92 55.50 0.61 -20.90 16
15 Si 0.91 18.44 29.00 -169.99 -4.93 13.51 16
16 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16
17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16
18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
19 C 0.12 2.73 4.36 -4.04 -0.02 2.71 16
20 C -0.12 -2.33 6.11 -27.88 -0.17 -2.50 16
21 C 0.48 8.70 8.33 36.00 0.30 9.00 16
22 O -0.51 -10.78 16.74 -18.75 -0.31 -11.09 16
23 O -0.53 -7.37 13.42 -39.28 -0.53 -7.89 16
24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
26 H 0.11 1.89 6.00 -51.93 -0.31 1.58 16
27 H 0.17 2.02 8.06 -52.48 -0.42 1.59 16
28 H 0.18 3.98 4.37 -52.49 -0.23 3.75 16
29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16
30 H 0.06 1.58 7.32 -51.93 -0.38 1.20 16
31 H 0.13 3.31 5.33 -51.93 -0.28 3.03 16
32 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16
33 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16
34 H 0.40 3.68 9.10 45.56 0.41 4.10 16
LS Contribution 314.98 15.07 4.75 4.75
Total: -1.00 -29.30 314.98 -6.58 -35.88
By element:
Atomic # 1 Polarization: 14.27 SS G_CDS: -2.36 Total: 11.91 kcal
Atomic # 6 Polarization: 10.79 SS G_CDS: -0.89 Total: 9.90 kcal
Atomic # 7 Polarization: -38.87 SS G_CDS: -0.07 Total: -38.93 kcal
Atomic # 8 Polarization: -33.09 SS G_CDS: -0.77 Total: -33.86 kcal
Atomic # 14 Polarization: 18.44 SS G_CDS: -4.93 Total: 13.51 kcal
Atomic # 35 Polarization: -0.84 SS G_CDS: -2.32 Total: -3.15 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -29.30 -6.58 -35.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600927194.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.954 kcal
(2) G-P(sol) polarization free energy of solvation -29.296 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds