Wall clock time and date at job start Sat Apr 11 2020 07:01:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.35653 * 125.68332 * 2 1
4 4 C 1.35540 * 108.86799 * 180.26948 * 3 2 1
5 5 Br 1.89099 * 126.06443 * 179.71966 * 4 3 2
6 6 C 1.39843 * 107.86972 * 359.74974 * 4 3 2
7 7 C 1.37663 * 125.68065 * 179.84141 * 2 1 3
8 8 C 1.46544 * 126.23096 * 0.02562 * 7 2 1
9 9 O 1.21737 * 120.00196 * 6.27992 * 8 7 2
10 10 N 1.34779 * 120.00061 * 186.27786 * 8 7 2
11 11 C 1.36879 * 119.99909 * 5.68969 * 10 8 7
12 12 H 1.08001 * 119.99691 * 48.97053 * 11 10 8
13 13 C 1.39003 * 120.00314 * 228.97264 * 11 10 8
14 14 N 1.31402 * 119.99819 * 355.86868 * 13 11 10
15 15 Si 1.86793 * 120.00158 * 175.86741 * 13 11 10
16 16 H 1.48501 * 109.47188 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47307 * 119.99986 * 15 13 11
18 18 H 1.48504 * 109.47362 * 239.99828 * 15 13 11
19 19 C 1.46501 * 120.00036 * 185.69429 * 10 8 7
20 20 C 1.53005 * 109.46707 * 265.37618 * 19 10 8
21 21 C 1.50695 * 109.46711 * 180.02562 * 20 19 10
22 22 O 1.20829 * 120.00402 * 359.97438 * 21 20 19
23 23 O 1.34239 * 119.99873 * 180.02562 * 21 20 19
24 24 H 1.08997 * 109.46742 * 273.98273 * 1 2 3
25 25 H 1.09003 * 109.46912 * 33.98399 * 1 2 3
26 26 H 1.08998 * 109.47207 * 153.98010 * 1 2 3
27 27 H 1.08007 * 125.56416 * 0.02562 * 3 2 1
28 28 H 1.07999 * 126.46082 * 179.97438 * 6 4 3
29 29 H 0.96998 * 119.99618 * 180.02562 * 14 13 11
30 30 H 1.08995 * 109.47153 * 25.37170 * 19 10 8
31 31 H 1.09003 * 109.46764 * 145.37920 * 19 10 8
32 32 H 1.08995 * 109.46948 * 299.99677 * 20 19 10
33 33 H 1.08996 * 109.47174 * 59.99918 * 20 19 10
34 34 H 0.96702 * 116.99857 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2563 1.1018 0.0000
4 6 3.5538 0.7098 -0.0060
5 35 5.0615 1.8510 -0.0161
6 6 3.5795 -0.6884 -0.0042
7 6 2.2680 -1.1182 0.0031
8 6 1.8130 -2.5112 0.0064
9 8 0.6279 -2.7648 -0.1087
10 7 2.7066 -3.5117 0.1369
11 6 4.0225 -3.2263 0.3828
12 1 4.2872 -2.5347 1.1689
13 6 5.0181 -3.8265 -0.3793
14 7 4.7015 -4.7285 -1.2808
15 14 6.8060 -3.3507 -0.1219
16 1 6.8956 -2.3202 0.9436
17 1 7.5841 -4.5495 0.2815
18 1 7.3598 -2.8037 -1.3866
19 6 2.2695 -4.9047 0.0154
20 6 1.9714 -5.4687 1.4062
21 6 1.5224 -6.9018 1.2813
22 8 1.4479 -7.4189 0.1918
23 8 1.2042 -7.6036 2.3804
24 1 -0.3633 0.0714 1.0252
25 1 -0.3633 0.8522 -0.5744
26 1 -0.3633 -0.9235 -0.4508
27 1 1.9091 2.1246 0.0004
28 1 4.4598 -1.3141 -0.0081
29 1 5.3963 -5.1476 -1.8123
30 1 1.3684 -4.9508 -0.5961
31 1 3.0578 -5.4932 -0.4540
32 1 2.8725 -5.4227 2.0176
33 1 1.1832 -4.8802 1.8756
34 1 0.9212 -8.5191 2.2501
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001600927194.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:14
Heat of formation + Delta-G solvation = -82.099861 kcal
Electronic energy + Delta-G solvation = -22377.608040 eV
Core-core repulsion = 18743.578713 eV
Total energy + Delta-G solvation = -3634.029327 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 344.020 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.26650 -41.25694 -39.91478 -37.23339 -36.89303 -34.08176 -33.84795 -32.68773
-31.36083 -29.63629 -27.52755 -26.76084 -25.81186 -22.96410 -21.84192 -21.19844
-20.67084 -19.30909 -18.94911 -17.66698 -17.57675 -17.11809 -16.86683 -16.40622
-16.12261 -15.90682 -15.28112 -14.63250 -14.51566 -14.24757 -14.10798 -14.04336
-13.63217 -13.55302 -13.37587 -13.05514 -12.83115 -12.78650 -12.54623 -12.41551
-11.98797 -11.86066 -11.66697 -11.62697 -11.08313 -10.93851 -10.50665 -9.51932
-9.42140 -9.02717 -8.23992 -6.20247 0.66811 0.90501 1.21625 1.45658
1.51104 1.61489 1.62818 1.88010 2.17450 2.32572 2.59190 3.06146
3.15032 4.03797 4.05715 4.10433 4.15880 4.32734 4.45387 4.52118
4.53557 4.76420 4.79154 4.98117 5.08957 5.23829 5.35627 5.55651
5.65065 5.76540 5.99605 6.02441 6.33017 6.41577 7.02456 7.08137
7.46100 7.90022 8.71707
Molecular weight = 344.02amu
Principal moments of inertia in cm(-1)
A = 0.013680 B = 0.004446 C = 0.003537
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2046.226571 B = 6295.808715 C = 7914.863525
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.415 5.415
3 C 0.059 3.941
4 C -0.207 4.207
5 Br -0.031 7.031
6 C -0.113 4.113
7 C -0.045 4.045
8 C 0.533 3.467
9 O -0.630 6.630
10 N -0.432 5.432
11 C -0.344 4.344
12 H 0.104 0.896
13 C 0.015 3.985
14 N -0.891 5.891
15 Si 0.962 3.038
16 H -0.245 1.245
17 H -0.276 1.276
18 H -0.279 1.279
19 C 0.123 3.877
20 C -0.113 4.113
21 C 0.496 3.504
22 O -0.549 6.549
23 O -0.508 6.508
24 H 0.086 0.914
25 H 0.116 0.884
26 H 0.082 0.918
27 H 0.213 0.787
28 H 0.166 0.834
29 H 0.273 0.727
30 H 0.037 0.963
31 H 0.110 0.890
32 H 0.115 0.885
33 H 0.099 0.901
34 H 0.426 0.574
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.516 9.937 5.850 11.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 N -0.088 5.088
3 C -0.080 4.080
4 C -0.293 4.293
5 Br 0.052 6.948
6 C -0.140 4.140
7 C -0.158 4.158
8 C 0.325 3.675
9 O -0.520 6.520
10 N -0.149 5.149
11 C -0.472 4.472
12 H 0.121 0.879
13 C -0.189 4.189
14 N -0.527 5.527
15 Si 0.785 3.215
16 H -0.168 1.168
17 H -0.201 1.201
18 H -0.204 1.204
19 C 0.000 4.000
20 C -0.152 4.152
21 C 0.339 3.661
22 O -0.440 6.440
23 O -0.322 6.322
24 H 0.104 0.896
25 H 0.134 0.866
26 H 0.100 0.900
27 H 0.229 0.771
28 H 0.183 0.817
29 H 0.084 0.916
30 H 0.056 0.944
31 H 0.128 0.872
32 H 0.133 0.867
33 H 0.118 0.882
34 H 0.288 0.712
Dipole moment (debyes) X Y Z Total
from point charges -1.742 10.261 5.423 11.736
hybrid contribution 0.287 -1.140 -0.345 1.225
sum -1.454 9.121 5.078 10.540
Atomic orbital electron populations
1.22433 0.74548 1.05889 1.04657 1.44132 1.07755 1.04401 1.52548
1.22276 0.88247 0.92754 1.04739 1.21192 0.92471 0.94088 1.21543
1.96469 1.37659 1.62159 1.98475 1.22411 0.97012 0.93014 1.01562
1.19996 0.90464 0.87711 1.17623 1.17607 0.85371 0.84880 0.79678
1.90574 1.17549 1.85442 1.58442 1.43122 1.07700 1.03076 1.60984
1.19756 0.80476 1.29383 1.17549 0.87879 1.26291 1.03813 0.94952
0.93821 1.69743 1.35371 1.25140 1.22466 0.85319 0.77887 0.79132
0.79207 1.16819 1.20138 1.20412 1.21301 1.00481 0.84334 0.93928
1.21575 1.03919 0.88279 1.01430 1.23372 0.72090 0.89298 0.81329
1.90701 1.51173 1.72097 1.29997 1.84509 1.78687 1.31957 1.37005
0.89585 0.86563 0.89979 0.77068 0.81740 0.91630 0.94433 0.87225
0.86664 0.88236 0.71209
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.72 10.76 127.77 1.37 3.09 16
2 N -0.42 -13.95 3.17 -534.12 -1.69 -15.64 16
3 C 0.06 1.68 11.35 83.48 0.95 2.63 16
4 C -0.21 -6.95 6.53 22.03 0.14 -6.80 16
5 Br -0.03 -0.89 34.08 -20.37 -0.69 -1.58 16
6 C -0.11 -4.64 9.02 22.61 0.20 -4.44 16
7 C -0.05 -1.93 6.78 40.34 0.27 -1.66 16
8 C 0.53 25.95 7.58 86.41 0.66 26.60 16
9 O -0.63 -31.98 14.14 -4.47 -0.06 -32.05 16
10 N -0.43 -21.27 2.50 -640.19 -1.60 -22.87 16
11 C -0.34 -16.44 6.18 84.09 0.52 -15.92 16
12 H 0.10 4.77 6.28 -2.91 -0.02 4.75 16
13 C 0.02 0.73 5.34 84.94 0.45 1.19 16
14 N -0.89 -46.39 10.92 21.67 0.24 -46.15 16
15 Si 0.96 38.03 29.00 68.60 1.99 40.01 16
16 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16
17 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16
18 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16
19 C 0.12 5.94 4.36 86.38 0.38 6.32 16
20 C -0.11 -4.41 6.11 29.85 0.18 -4.23 16
21 C 0.50 17.78 8.33 71.23 0.59 18.38 16
22 O -0.55 -23.48 16.74 21.95 0.37 -23.11 16
23 O -0.51 -13.32 13.42 -51.50 -0.69 -14.01 16
24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16
25 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16
26 H 0.08 2.74 6.00 -2.39 -0.01 2.72 16
27 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16
28 H 0.17 7.24 4.37 -2.91 -0.01 7.22 16
29 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16
30 H 0.04 1.96 7.32 -2.39 -0.02 1.94 16
31 H 0.11 5.82 5.33 -2.39 -0.01 5.81 16
32 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16
33 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16
34 H 0.43 6.83 9.10 -74.06 -0.67 6.16 16
Total: -1.00 -65.91 314.98 4.08 -61.84
By element:
Atomic # 1 Polarization: 27.90 SS G_CDS: 0.50 Total: 28.40 kcal
Atomic # 6 Polarization: 19.45 SS G_CDS: 5.72 Total: 25.17 kcal
Atomic # 7 Polarization: -81.61 SS G_CDS: -3.05 Total: -84.66 kcal
Atomic # 8 Polarization: -68.79 SS G_CDS: -0.39 Total: -69.17 kcal
Atomic # 14 Polarization: 38.03 SS G_CDS: 1.99 Total: 40.01 kcal
Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.58 kcal
Total: -65.91 4.08 -61.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600927194.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.264 kcal
(2) G-P(sol) polarization free energy of solvation -65.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds