Wall clock time and date at job start Sat Apr 11 2020 07:02:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48500 * 109.47300 * 272.04083 * 3 2 1
5 5 H 1.48492 * 109.47188 * 32.04469 * 3 2 1
6 6 H 1.48506 * 109.46843 * 152.04394 * 3 2 1
7 7 C 1.38810 * 120.00084 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99807 * 341.91332 * 7 2 1
9 9 N 1.36935 * 120.00150 * 161.90936 * 7 2 1
10 10 C 1.46926 * 120.63104 * 329.32002 * 9 7 2
11 11 C 1.53195 * 108.89759 * 233.51579 * 10 9 7
12 12 C 1.53075 * 109.29121 * 305.58117 * 11 10 9
13 13 N 1.46502 * 109.44997 * 181.23855 * 12 11 10
14 14 S 1.65603 * 119.99632 * 96.68697 * 13 12 11
15 15 O 1.42105 * 106.39820 * 177.91613 * 14 13 12
16 16 O 1.42097 * 106.40314 * 310.82889 * 14 13 12
17 17 C 1.76201 * 107.22157 * 64.37496 * 14 13 12
18 18 C 1.38228 * 120.00668 * 245.17267 * 17 14 13
19 19 C 1.38223 * 120.01500 * 179.97438 * 18 17 14
20 20 C 1.38260 * 120.02417 * 0.04589 * 19 18 17
21 21 C 1.38192 * 120.01358 * 359.97438 * 20 19 18
22 22 C 1.38336 * 120.00461 * 64.90237 * 17 14 13
23 23 Cl 1.73598 * 120.01366 * 359.97129 * 22 17 14
24 24 C 1.53039 * 109.66206 * 61.14920 * 12 11 10
25 25 C 1.46923 * 120.63271 * 149.30041 * 9 7 2
26 26 H 0.97002 * 119.99594 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.58772 * 353.37520 * 10 9 7
28 28 H 1.09004 * 109.58485 * 113.65506 * 10 9 7
29 29 H 1.09000 * 109.49514 * 65.38111 * 11 10 9
30 30 H 1.08991 * 109.50025 * 185.48486 * 11 10 9
31 31 H 1.08996 * 109.33662 * 301.12808 * 12 11 10
32 32 H 0.96993 * 120.00333 * 276.67895 * 13 12 11
33 33 H 1.08007 * 119.99468 * 0.02562 * 18 17 14
34 34 H 1.08002 * 119.98533 * 180.02562 * 19 18 17
35 35 H 1.08001 * 119.99184 * 179.97438 * 20 19 18
36 36 H 1.08001 * 120.00956 * 180.02562 * 21 20 19
37 37 H 1.09003 * 109.50062 * 178.74464 * 24 12 11
38 38 H 1.09007 * 109.49828 * 58.65019 * 24 12 11
39 39 H 1.09002 * 109.58761 * 246.20206 * 25 9 7
40 40 H 1.09006 * 109.58563 * 6.47890 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4546 2.0714 -1.3992
5 1 1.4700 2.6398 0.7428
6 1 3.5688 1.4280 0.6564
7 6 2.0103 -1.2021 -0.0005
8 1 1.5103 -2.1144 0.2894
9 7 3.3289 -1.2313 -0.3688
10 6 3.8530 -0.2732 -1.3517
11 6 4.5556 -1.0462 -2.4722
12 6 5.6142 -1.9691 -1.8633
13 7 6.3086 -2.6883 -2.9341
14 16 7.7564 -2.1241 -3.5069
15 8 8.1892 -3.0548 -4.4897
16 8 7.5703 -0.7411 -3.7750
17 6 8.9153 -2.2229 -2.1834
18 6 9.4585 -1.0681 -1.6524
19 6 10.3672 -1.1454 -0.6138
20 6 10.7342 -2.3779 -0.1060
21 6 10.1921 -3.5332 -0.6362
22 6 9.2774 -3.4561 -1.6717
23 17 8.5898 -4.9065 -2.3328
24 6 4.9425 -2.9750 -0.9257
25 6 4.2466 -2.2210 0.2117
26 1 -0.4850 0.8401 0.0004
27 1 3.0311 0.3088 -1.7689
28 1 4.5647 0.3951 -0.8669
29 1 3.8240 -1.6440 -3.0158
30 1 5.0320 -0.3435 -3.1557
31 1 6.3327 -1.3726 -1.3012
32 1 5.9205 -3.4950 -3.3075
33 1 9.1722 -0.1050 -2.0487
34 1 10.7910 -0.2427 -0.1991
35 1 11.4446 -2.4377 0.7053
36 1 10.4784 -4.4959 -0.2392
37 1 5.6957 -3.6449 -0.5109
38 1 4.2059 -3.5550 -1.4818
39 1 4.9923 -1.7132 0.8235
40 1 3.6847 -2.9227 0.8283
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000110824319.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:18
Heat of formation + Delta-G solvation = -25.855675 kcal
Electronic energy + Delta-G solvation = -26515.883844 eV
Core-core repulsion = 22677.307099 eV
Total energy + Delta-G solvation = -3838.576744 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.075 amu
Computer time = 1.84 seconds
Orbital eigenvalues (eV)
-39.65820 -38.33930 -37.35529 -36.83294 -35.91236 -34.83690 -32.00931 -31.81480
-31.21996 -30.41962 -29.69468 -24.80916 -23.80310 -23.26258 -22.82903 -21.87997
-20.05914 -19.47406 -18.43340 -17.53400 -16.95554 -16.60587 -16.40250 -15.78972
-15.15029 -15.03568 -14.53291 -14.33496 -14.21317 -14.08328 -13.75921 -13.48927
-13.18619 -12.87531 -12.71720 -12.21106 -12.15804 -12.14645 -12.02683 -11.97695
-11.86159 -11.66260 -11.55435 -11.24961 -10.94347 -10.85665 -10.66184 -10.31085
-10.12868 -9.89545 -9.83391 -9.57181 -9.28069 -9.17652 -8.63335 -6.96355
-5.96097 -3.36124 0.13538 0.39587 0.69347 1.54519 2.78251 3.03695
3.33683 3.48251 3.50733 3.59766 4.07244 4.37968 4.49964 4.52421
4.69301 4.83914 4.89263 4.99536 5.00493 5.25012 5.27812 5.31497
5.43230 5.49445 5.53307 5.61887 5.80515 5.81096 6.01749 6.12134
6.21346 6.23433 6.42320 6.44181 6.59012 6.64605 6.68463 6.88771
7.02890 7.97655 8.32632 8.92558 9.70232 10.08371 11.19829
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.016356 B = 0.003723 C = 0.003665
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1711.501822 B = 7519.236654 C = 7637.940530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.026 3.974
3 Si 0.883 3.117
4 H -0.286 1.286
5 H -0.303 1.303
6 H -0.270 1.270
7 C -0.262 4.262
8 H 0.084 0.916
9 N -0.605 5.605
10 C 0.126 3.874
11 C -0.150 4.150
12 C 0.162 3.838
13 N -1.105 6.105
14 S 2.688 3.312
15 O -0.951 6.951
16 O -0.951 6.951
17 C -0.673 4.673
18 C -0.010 4.010
19 C -0.136 4.136
20 C -0.054 4.054
21 C -0.131 4.131
22 C 0.056 3.944
23 Cl -0.041 7.041
24 C -0.138 4.138
25 C 0.150 3.850
26 H 0.263 0.737
27 H 0.076 0.924
28 H 0.027 0.973
29 H 0.072 0.928
30 H 0.069 0.931
31 H 0.076 0.924
32 H 0.418 0.582
33 H 0.153 0.847
34 H 0.140 0.860
35 H 0.140 0.860
36 H 0.142 0.858
37 H 0.060 0.940
38 H 0.072 0.928
39 H 0.023 0.977
40 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.045 -6.874 -1.754 24.113
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.173 4.173
3 Si 0.713 3.287
4 H -0.213 1.213
5 H -0.231 1.231
6 H -0.195 1.195
7 C -0.390 4.390
8 H 0.102 0.898
9 N -0.329 5.329
10 C 0.000 4.000
11 C -0.191 4.191
12 C 0.056 3.944
13 N -0.865 5.865
14 S 2.774 3.226
15 O -0.941 6.941
16 O -0.941 6.941
17 C -0.758 4.758
18 C -0.029 4.029
19 C -0.155 4.155
20 C -0.073 4.073
21 C -0.151 4.151
22 C 0.028 3.972
23 Cl -0.011 7.011
24 C -0.179 4.179
25 C 0.023 3.977
26 H 0.073 0.927
27 H 0.094 0.906
28 H 0.045 0.955
29 H 0.091 0.909
30 H 0.087 0.913
31 H 0.094 0.906
32 H 0.254 0.746
33 H 0.171 0.829
34 H 0.158 0.842
35 H 0.158 0.842
36 H 0.160 0.840
37 H 0.079 0.921
38 H 0.090 0.910
39 H 0.041 0.959
40 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 23.088 -6.457 -2.538 24.108
hybrid contribution 0.501 0.321 0.573 0.826
sum 23.590 -6.136 -1.965 24.454
Atomic orbital electron populations
1.69815 1.05777 1.26613 1.52989 1.25354 0.95226 0.97682 0.99034
0.86931 0.79920 0.84491 0.77313 1.21347 1.23129 1.19480 1.18895
0.83718 0.94415 1.42012 0.89796 1.44375 1.07098 1.36547 1.44909
1.21370 0.97081 0.92183 0.89402 1.22565 0.97948 0.99003 0.99571
1.20804 0.94201 0.92947 0.86488 1.55631 1.37255 1.41023 1.52627
1.02231 0.72908 0.74095 0.73325 1.93624 1.81199 1.63585 1.55693
1.93603 1.85138 1.32768 1.82542 1.31054 1.22481 0.97603 1.24659
1.21083 0.91978 0.97086 0.92777 1.21439 0.98367 0.98561 0.97096
1.21470 0.96512 0.91894 0.97407 1.21203 0.97314 1.00223 0.96319
1.20489 0.95196 0.86879 0.94626 1.98451 1.82844 1.35580 1.84238
1.22356 0.99589 0.97708 0.98265 1.20906 0.92370 0.91800 0.92636
0.92721 0.90570 0.95508 0.90914 0.91262 0.90620 0.74633 0.82909
0.84223 0.84207 0.83980 0.92095 0.90950 0.95918 0.91355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 35.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.59 13.97 55.49 0.78 -26.81 16
2 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16
3 Si 0.88 22.14 24.34 -169.99 -4.14 18.01 16
4 H -0.29 -6.96 6.65 56.52 0.38 -6.59 16
5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16
6 H -0.27 -6.58 6.61 56.52 0.37 -6.21 16
7 C -0.26 -7.14 10.02 -15.06 -0.15 -7.29 16
8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16
9 N -0.61 -13.81 2.73 -172.32 -0.47 -14.28 16
10 C 0.13 2.69 4.19 -3.71 -0.02 2.67 16
11 C -0.15 -2.63 5.70 -26.59 -0.15 -2.79 16
12 C 0.16 2.38 2.62 -67.87 -0.18 2.20 16
13 N -1.10 -14.05 5.24 -4.84 -0.03 -14.08 16
14 S 2.69 36.31 4.96 -107.50 -0.53 35.77 16
15 O -0.95 -14.38 16.50 -57.17 -0.94 -15.32 16
16 O -0.95 -14.99 16.42 -57.17 -0.94 -15.93 16
17 C -0.67 -7.90 5.72 -39.55 -0.23 -8.13 16
18 C -0.01 -0.10 9.55 -39.59 -0.38 -0.48 16
19 C -0.14 -1.07 10.05 -39.58 -0.40 -1.47 16
20 C -0.05 -0.39 10.05 -39.59 -0.40 -0.78 16
21 C -0.13 -1.11 9.83 -39.55 -0.39 -1.50 16
22 C 0.06 0.61 6.30 -39.50 -0.25 0.36 16
23 Cl -0.04 -0.45 26.48 -51.86 -1.37 -1.82 16
24 C -0.14 -2.04 5.62 -26.61 -0.15 -2.19 16
25 C 0.15 2.74 6.52 -3.71 -0.02 2.72 16
26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
27 H 0.08 1.79 4.75 -51.93 -0.25 1.55 16
28 H 0.03 0.56 6.98 -51.93 -0.36 0.20 16
29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
30 H 0.07 1.17 7.82 -51.93 -0.41 0.77 16
31 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16
32 H 0.42 4.60 8.86 -34.47 -0.31 4.29 16
33 H 0.15 1.45 7.33 -52.48 -0.38 1.07 16
34 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16
35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16
36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16
37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
40 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16
LS Contribution 347.02 15.07 5.23 5.23
Total: -1.00 -33.69 347.02 -10.31 -44.00
By element:
Atomic # 1 Polarization: 6.34 SS G_CDS: -5.09 Total: 1.25 kcal
Atomic # 6 Polarization: -13.21 SS G_CDS: -2.80 Total: -16.01 kcal
Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.17 kcal
Atomic # 8 Polarization: -29.37 SS G_CDS: -1.88 Total: -31.25 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.01 kcal
Atomic # 16 Polarization: 36.31 SS G_CDS: -0.53 Total: 35.77 kcal
Atomic # 17 Polarization: -0.45 SS G_CDS: -1.37 Total: -1.82 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -33.69 -10.31 -44.00 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000110824319.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.143 kcal
(2) G-P(sol) polarization free energy of solvation -33.687 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.84 seconds