Wall clock time and date at job start Sat Apr 11 2020 07:02:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48500 * 109.47300 * 272.04083 * 3 2 1
5 5 H 1.48492 * 109.47188 * 32.04469 * 3 2 1
6 6 H 1.48506 * 109.46843 * 152.04394 * 3 2 1
7 7 C 1.38810 * 120.00084 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99807 * 341.91332 * 7 2 1
9 9 N 1.36935 * 120.00150 * 161.90936 * 7 2 1
10 10 C 1.46926 * 120.63104 * 329.32002 * 9 7 2
11 11 C 1.53195 * 108.89759 * 233.51579 * 10 9 7
12 12 C 1.53075 * 109.29121 * 305.58117 * 11 10 9
13 13 N 1.46502 * 109.44997 * 181.23855 * 12 11 10
14 14 S 1.65603 * 119.99632 * 96.68697 * 13 12 11
15 15 O 1.42105 * 106.39820 * 177.91613 * 14 13 12
16 16 O 1.42097 * 106.40314 * 310.82889 * 14 13 12
17 17 C 1.76201 * 107.22157 * 64.37496 * 14 13 12
18 18 C 1.38228 * 120.00668 * 245.17267 * 17 14 13
19 19 C 1.38223 * 120.01500 * 179.97438 * 18 17 14
20 20 C 1.38260 * 120.02417 * 0.04589 * 19 18 17
21 21 C 1.38192 * 120.01358 * 359.97438 * 20 19 18
22 22 C 1.38336 * 120.00461 * 64.90237 * 17 14 13
23 23 Cl 1.73598 * 120.01366 * 359.97129 * 22 17 14
24 24 C 1.53039 * 109.66206 * 61.14920 * 12 11 10
25 25 C 1.46923 * 120.63271 * 149.30041 * 9 7 2
26 26 H 0.97002 * 119.99594 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.58772 * 353.37520 * 10 9 7
28 28 H 1.09004 * 109.58485 * 113.65506 * 10 9 7
29 29 H 1.09000 * 109.49514 * 65.38111 * 11 10 9
30 30 H 1.08991 * 109.50025 * 185.48486 * 11 10 9
31 31 H 1.08996 * 109.33662 * 301.12808 * 12 11 10
32 32 H 0.96993 * 120.00333 * 276.67895 * 13 12 11
33 33 H 1.08007 * 119.99468 * 0.02562 * 18 17 14
34 34 H 1.08002 * 119.98533 * 180.02562 * 19 18 17
35 35 H 1.08001 * 119.99184 * 179.97438 * 20 19 18
36 36 H 1.08001 * 120.00956 * 180.02562 * 21 20 19
37 37 H 1.09003 * 109.50062 * 178.74464 * 24 12 11
38 38 H 1.09007 * 109.49828 * 58.65019 * 24 12 11
39 39 H 1.09002 * 109.58761 * 246.20206 * 25 9 7
40 40 H 1.09006 * 109.58563 * 6.47890 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4546 2.0714 -1.3992
5 1 1.4700 2.6398 0.7428
6 1 3.5688 1.4280 0.6564
7 6 2.0103 -1.2021 -0.0005
8 1 1.5103 -2.1144 0.2894
9 7 3.3289 -1.2313 -0.3688
10 6 3.8530 -0.2732 -1.3517
11 6 4.5556 -1.0462 -2.4722
12 6 5.6142 -1.9691 -1.8633
13 7 6.3086 -2.6883 -2.9341
14 16 7.7564 -2.1241 -3.5069
15 8 8.1892 -3.0548 -4.4897
16 8 7.5703 -0.7411 -3.7750
17 6 8.9153 -2.2229 -2.1834
18 6 9.4585 -1.0681 -1.6524
19 6 10.3672 -1.1454 -0.6138
20 6 10.7342 -2.3779 -0.1060
21 6 10.1921 -3.5332 -0.6362
22 6 9.2774 -3.4561 -1.6717
23 17 8.5898 -4.9065 -2.3328
24 6 4.9425 -2.9750 -0.9257
25 6 4.2466 -2.2210 0.2117
26 1 -0.4850 0.8401 0.0004
27 1 3.0311 0.3088 -1.7689
28 1 4.5647 0.3951 -0.8669
29 1 3.8240 -1.6440 -3.0158
30 1 5.0320 -0.3435 -3.1557
31 1 6.3327 -1.3726 -1.3012
32 1 5.9205 -3.4950 -3.3075
33 1 9.1722 -0.1050 -2.0487
34 1 10.7910 -0.2427 -0.1991
35 1 11.4446 -2.4377 0.7053
36 1 10.4784 -4.4959 -0.2392
37 1 5.6957 -3.6449 -0.5109
38 1 4.2059 -3.5550 -1.4818
39 1 4.9923 -1.7132 0.8235
40 1 3.6847 -2.9227 0.8283
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000110824319.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:17
Heat of formation + Delta-G solvation = -50.116674 kcal
Electronic energy + Delta-G solvation = -26516.935880 eV
Core-core repulsion = 22677.307099 eV
Total energy + Delta-G solvation = -3839.628780 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.075 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.31835 -39.77177 -38.42067 -37.64927 -37.03033 -36.34719 -33.91759 -32.48429
-31.92084 -31.86809 -31.26404 -26.60173 -24.51237 -24.35205 -23.93173 -23.46307
-21.36524 -20.60398 -19.30413 -18.97160 -18.37302 -17.67704 -17.35064 -17.07668
-16.41361 -15.91608 -15.84530 -15.63878 -15.27276 -15.07921 -14.98624 -14.81525
-14.61871 -14.35332 -14.07297 -13.53732 -13.49218 -13.27097 -13.22556 -13.02168
-12.75883 -12.72241 -12.63427 -12.50169 -12.45518 -12.21953 -11.98941 -11.94959
-11.67825 -11.50547 -11.30564 -10.75868 -10.57461 -10.39664 -9.95460 -8.87525
-8.14528 -5.49849 -0.77901 -0.40732 0.04952 0.80714 1.34051 1.42720
1.51927 1.83156 2.31546 2.44247 2.61738 3.09204 3.22994 3.37393
3.67309 3.72058 3.89600 3.95182 4.10738 4.17351 4.18983 4.29664
4.34312 4.38031 4.51586 4.67169 4.70347 4.81380 4.82983 5.01432
5.02510 5.06626 5.12956 5.20212 5.22445 5.26039 5.49985 5.63838
5.91576 6.02211 6.16683 6.95277 7.64456 8.05976 9.05445
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.016356 B = 0.003723 C = 0.003665
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1711.501822 B = 7519.236654 C = 7637.940530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.959 5.959
2 C -0.032 4.032
3 Si 0.942 3.058
4 H -0.278 1.278
5 H -0.312 1.312
6 H -0.254 1.254
7 C -0.246 4.246
8 H 0.053 0.947
9 N -0.619 5.619
10 C 0.121 3.879
11 C -0.146 4.146
12 C 0.169 3.831
13 N -1.099 6.099
14 S 2.697 3.303
15 O -0.973 6.973
16 O -0.979 6.979
17 C -0.686 4.686
18 C -0.028 4.028
19 C -0.133 4.133
20 C -0.043 4.043
21 C -0.132 4.132
22 C 0.039 3.961
23 Cl -0.052 7.052
24 C -0.126 4.126
25 C 0.143 3.857
26 H 0.261 0.739
27 H 0.049 0.951
28 H 0.038 0.962
29 H 0.065 0.935
30 H 0.075 0.925
31 H 0.089 0.911
32 H 0.426 0.574
33 H 0.153 0.847
34 H 0.170 0.830
35 H 0.179 0.821
36 H 0.165 0.835
37 H 0.094 0.906
38 H 0.066 0.934
39 H 0.041 0.959
40 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.822 -7.054 -0.587 27.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.606 5.606
2 C -0.227 4.227
3 Si 0.771 3.229
4 H -0.205 1.205
5 H -0.241 1.241
6 H -0.179 1.179
7 C -0.376 4.376
8 H 0.071 0.929
9 N -0.344 5.344
10 C -0.005 4.005
11 C -0.187 4.187
12 C 0.062 3.938
13 N -0.859 5.859
14 S 2.788 3.212
15 O -0.963 6.963
16 O -0.969 6.969
17 C -0.774 4.774
18 C -0.047 4.047
19 C -0.151 4.151
20 C -0.061 4.061
21 C -0.151 4.151
22 C 0.010 3.990
23 Cl -0.022 7.022
24 C -0.167 4.167
25 C 0.018 3.982
26 H 0.070 0.930
27 H 0.068 0.932
28 H 0.056 0.944
29 H 0.083 0.917
30 H 0.094 0.906
31 H 0.107 0.893
32 H 0.263 0.737
33 H 0.171 0.829
34 H 0.187 0.813
35 H 0.196 0.804
36 H 0.182 0.818
37 H 0.112 0.888
38 H 0.084 0.916
39 H 0.059 0.941
40 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 26.891 -6.665 -1.416 27.741
hybrid contribution -0.553 0.282 0.260 0.673
sum 26.338 -6.382 -1.156 27.125
Atomic orbital electron populations
1.69948 1.07474 1.27154 1.55978 1.25963 0.95771 1.00966 0.99993
0.85968 0.79014 0.80332 0.77601 1.20476 1.24056 1.17853 1.18851
0.85689 0.93127 1.39925 0.92932 1.44487 1.06239 1.37774 1.45864
1.21382 0.96574 0.92374 0.90171 1.22466 0.98473 0.99343 0.98377
1.20622 0.93765 0.92699 0.86702 1.55385 1.37324 1.41063 1.52161
1.01583 0.72999 0.73071 0.73589 1.93594 1.81471 1.63950 1.57272
1.93563 1.85662 1.34164 1.83556 1.30609 1.23139 0.98822 1.24876
1.21291 0.92980 0.96598 0.93836 1.21842 0.97119 1.00300 0.95861
1.21977 0.95876 0.90853 0.97388 1.21589 0.96256 1.01998 0.95305
1.20680 0.96420 0.86139 0.95725 1.98444 1.83162 1.36048 1.84577
1.22205 0.99959 0.97541 0.96978 1.21128 0.92020 0.91067 0.94012
0.93031 0.93238 0.94436 0.91669 0.90639 0.89253 0.73727 0.82937
0.81300 0.80354 0.81761 0.88756 0.91551 0.94104 0.91835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -60.21 13.97 21.65 0.30 -59.90 16
2 C -0.03 -1.86 5.25 84.86 0.45 -1.42 16
3 Si 0.94 46.19 24.34 68.60 1.67 47.86 16
4 H -0.28 -13.12 6.65 99.48 0.66 -12.45 16
5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16
6 H -0.25 -11.68 6.61 99.48 0.66 -11.02 16
7 C -0.25 -13.66 10.02 84.03 0.84 -12.81 16
8 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16
9 N -0.62 -27.82 2.73 -699.09 -1.91 -29.73 16
10 C 0.12 5.02 4.19 86.36 0.36 5.38 16
11 C -0.15 -4.95 5.70 30.68 0.17 -4.78 16
12 C 0.17 4.61 2.62 45.03 0.12 4.73 16
13 N -1.10 -26.21 5.24 -169.23 -0.89 -27.10 16
14 S 2.70 69.86 4.96 -56.49 -0.28 69.58 16
15 O -0.97 -28.86 16.50 -128.00 -2.11 -30.98 16
16 O -0.98 -30.13 16.42 -128.00 -2.10 -32.23 16
17 C -0.69 -14.63 5.72 22.29 0.13 -14.51 16
18 C -0.03 -0.49 9.55 22.26 0.21 -0.28 16
19 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16
20 C -0.04 -0.39 10.05 22.26 0.22 -0.17 16
21 C -0.13 -1.71 9.83 22.29 0.22 -1.49 16
22 C 0.04 0.73 6.30 22.33 0.14 0.88 16
23 Cl -0.05 -1.04 26.48 -2.72 -0.07 -1.11 16
24 C -0.13 -3.42 5.62 30.67 0.17 -3.25 16
25 C 0.14 4.97 6.52 86.36 0.56 5.54 16
26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16
27 H 0.05 2.31 4.75 -2.39 -0.01 2.30 16
28 H 0.04 1.49 6.98 -2.38 -0.02 1.47 16
29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
30 H 0.08 2.47 7.82 -2.39 -0.02 2.46 16
31 H 0.09 2.25 7.82 -2.39 -0.02 2.23 16
32 H 0.43 8.79 8.86 -96.75 -0.86 7.94 16
33 H 0.15 2.62 7.33 -2.91 -0.02 2.60 16
34 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16
35 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16
36 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16
37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16
39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
40 H 0.06 2.25 7.93 -2.38 -0.02 2.23 16
Total: -1.00 -74.94 347.02 -1.44 -76.39
By element:
Atomic # 1 Polarization: 10.58 SS G_CDS: 0.12 Total: 10.70 kcal
Atomic # 6 Polarization: -27.31 SS G_CDS: 3.83 Total: -23.48 kcal
Atomic # 7 Polarization: -114.24 SS G_CDS: -2.49 Total: -116.73 kcal
Atomic # 8 Polarization: -58.99 SS G_CDS: -4.21 Total: -63.20 kcal
Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal
Atomic # 16 Polarization: 69.86 SS G_CDS: -0.28 Total: 69.58 kcal
Atomic # 17 Polarization: -1.04 SS G_CDS: -0.07 Total: -1.11 kcal
Total: -74.94 -1.44 -76.39 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000110824319.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.270 kcal
(2) G-P(sol) polarization free energy of solvation -74.943 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.386 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds