Wall clock time and date at job start Sat Apr 11 2020 07:04:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38188 * 119.61005 * 2 1
4 4 C 1.38675 * 119.18757 * 180.02562 * 3 2 1
5 5 C 1.38597 * 118.44085 * 0.02562 * 4 3 2
6 6 S 1.76204 * 120.42614 * 180.02562 * 5 4 3
7 7 O 1.42096 * 106.39906 * 1.45576 * 6 5 4
8 8 O 1.42098 * 106.39888 * 228.53875 * 6 5 4
9 9 N 1.65595 * 107.21758 * 115.00041 * 6 5 4
10 10 C 1.36942 * 119.99612 * 269.99694 * 9 6 5
11 11 H 1.08004 * 119.99737 * 131.33950 * 10 9 6
12 12 C 1.38807 * 120.00185 * 311.33243 * 10 9 6
13 13 N 1.31619 * 120.00153 * 334.89609 * 12 10 9
14 14 Si 1.86804 * 119.99952 * 154.89044 * 12 10 9
15 15 H 1.48501 * 109.46893 * 0.02562 * 14 12 10
16 16 H 1.48505 * 109.47126 * 120.00169 * 14 12 10
17 17 H 1.48501 * 109.47298 * 240.00397 * 14 12 10
18 18 C 1.46499 * 120.00661 * 90.00298 * 9 6 5
19 19 C 1.55230 * 110.58240 * 236.10075 * 18 9 6
20 20 C 1.54885 * 102.59059 * 203.33206 * 19 18 9
21 21 C 1.54273 * 104.31043 * 37.93126 * 20 19 18
22 22 C 1.53871 * 106.59840 * 336.32308 * 21 20 19
23 23 C 1.38353 * 119.15107 * 0.27378 * 5 4 3
24 24 Cl 1.73605 * 119.63432 * 179.72639 * 23 5 4
25 25 N 1.31883 * 119.60730 * 180.02562 * 2 1 3
26 26 H 1.08994 * 109.47548 * 89.99710 * 1 2 3
27 27 H 1.08999 * 109.47334 * 210.00071 * 1 2 3
28 28 H 1.09003 * 109.46710 * 329.99428 * 1 2 3
29 29 H 1.07996 * 120.40970 * 0.02562 * 3 2 1
30 30 H 1.08002 * 120.77310 * 179.97438 * 4 3 2
31 31 H 0.97003 * 120.00150 * 179.97438 * 13 12 10
32 32 H 1.09005 * 110.42897 * 358.67984 * 18 9 6
33 33 H 1.09000 * 110.89815 * 85.04224 * 19 18 9
34 34 H 1.08996 * 110.76817 * 321.56336 * 19 18 9
35 35 H 1.09003 * 110.48694 * 279.18790 * 20 19 18
36 36 H 1.08994 * 110.49062 * 156.67508 * 20 19 18
37 37 H 1.08997 * 110.03077 * 95.60993 * 21 20 19
38 38 H 1.09004 * 110.02957 * 216.99339 * 21 20 19
39 39 H 1.09004 * 110.03337 * 119.28207 * 22 21 20
40 40 H 1.09003 * 110.03514 * 240.67044 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1898 1.2014 0.0000
4 6 3.5765 1.1912 -0.0005
5 6 4.2275 -0.0323 -0.0016
6 16 5.9880 -0.1064 -0.0017
7 8 6.4461 1.2383 0.0342
8 8 6.3509 -1.0241 -1.0240
9 7 6.4497 -0.7961 1.4313
10 6 6.6857 -0.0078 2.5259
11 1 6.2423 -0.2591 3.4781
12 6 7.4950 1.1142 2.4116
13 7 8.4079 1.1736 1.4654
14 14 7.2883 2.5399 3.6008
15 1 6.2020 2.2275 4.5639
16 1 8.5579 2.7557 4.3404
17 1 6.9411 3.7695 2.8440
18 6 6.6057 -2.2495 1.5281
19 6 5.7174 -2.8191 2.6666
20 6 6.4302 -4.1486 3.0179
21 6 7.9325 -3.8186 2.8996
22 6 8.0441 -2.6112 1.9522
23 6 3.4775 -1.1949 -0.0079
24 17 4.2800 -2.7343 -0.0165
25 7 2.1586 -1.1466 -0.0005
26 1 -0.3634 0.0001 -1.0276
27 1 -0.3634 -0.8900 0.5138
28 1 -0.3633 0.8900 0.5139
29 1 1.6501 2.1369 0.0004
30 1 4.1359 2.1150 -0.0010
31 1 8.9732 1.9578 1.3853
32 1 6.3576 -2.7229 0.5780
33 1 4.7037 -3.0063 2.3122
34 1 5.7099 -2.1465 3.5242
35 1 6.1538 -4.9287 2.3085
36 1 6.1859 -4.4552 4.0349
37 1 8.3370 -3.5634 3.8790
38 1 8.4704 -4.6709 2.4842
39 1 8.5027 -1.7700 2.4720
40 1 8.6366 -2.8769 1.0768
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000190424222.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:03
Heat of formation + Delta-G solvation = -54.730056 kcal
Electronic energy + Delta-G solvation = -27606.348269 eV
Core-core repulsion = 23766.519437 eV
Total energy + Delta-G solvation = -3839.828831 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.075 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.31617 -39.39355 -38.02799 -37.48458 -36.14061 -35.77283 -34.17520 -33.32405
-33.23746 -29.39834 -28.81373 -28.44271 -26.08524 -24.80950 -23.61265 -21.53237
-20.94808 -20.61566 -19.36594 -18.40443 -17.82076 -17.75310 -17.25202 -16.87651
-16.28708 -15.97616 -15.94968 -15.38934 -15.27903 -14.64101 -14.45540 -14.21933
-13.93941 -13.77957 -13.74201 -13.54991 -13.20646 -13.13670 -12.88590 -12.69673
-12.52521 -12.39784 -12.26616 -12.16318 -11.98431 -11.92618 -11.85025 -11.79714
-11.60322 -11.22343 -11.08044 -10.94517 -10.74337 -10.56394 -10.06782 -9.46842
-8.45405 -6.07660 -0.50965 -0.06143 0.08222 0.55203 1.49818 1.54855
1.64585 2.27154 2.36748 2.79994 3.00705 3.28899 3.47157 3.52311
3.67356 3.94126 3.98130 4.07917 4.17725 4.19013 4.37084 4.59060
4.63021 4.73499 4.77210 4.79855 4.82453 4.87378 4.88886 4.98924
5.06250 5.15660 5.22526 5.24951 5.39195 5.45568 5.47713 5.58064
5.65355 5.95380 6.31076 6.48007 7.00445 7.45367 8.60131
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.010426 B = 0.007106 C = 0.005209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2684.848568 B = 3939.553593 C = 5374.163438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.162 3.838
3 C -0.180 4.180
4 C 0.005 3.995
5 C -0.726 4.726
6 S 2.533 3.467
7 O -0.979 6.979
8 O -1.030 7.030
9 N -0.804 5.804
10 C -0.265 4.265
11 H 0.098 0.902
12 C 0.021 3.979
13 N -0.804 5.804
14 Si 0.967 3.033
15 H -0.245 1.245
16 H -0.268 1.268
17 H -0.285 1.285
18 C 0.141 3.859
19 C -0.137 4.137
20 C -0.114 4.114
21 C -0.111 4.111
22 C -0.124 4.124
23 C 0.237 3.763
24 Cl -0.013 7.013
25 N -0.509 5.509
26 H 0.101 0.899
27 H 0.082 0.918
28 H 0.112 0.888
29 H 0.190 0.810
30 H 0.154 0.846
31 H 0.279 0.721
32 H 0.075 0.925
33 H 0.061 0.939
34 H 0.075 0.925
35 H 0.067 0.933
36 H 0.084 0.916
37 H 0.071 0.929
38 H 0.072 0.928
39 H 0.067 0.933
40 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.395 -2.806 3.849 12.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.025 3.975
3 C -0.199 4.199
4 C -0.021 4.021
5 C -0.807 4.807
6 S 2.634 3.366
7 O -0.967 6.967
8 O -1.020 7.020
9 N -0.627 5.627
10 C -0.415 4.415
11 H 0.116 0.884
12 C -0.195 4.195
13 N -0.441 5.441
14 Si 0.790 3.210
15 H -0.167 1.167
16 H -0.193 1.193
17 H -0.211 1.211
18 C 0.034 3.966
19 C -0.176 4.176
20 C -0.152 4.152
21 C -0.149 4.149
22 C -0.164 4.164
23 C 0.072 3.928
24 Cl 0.016 6.984
25 N -0.223 5.223
26 H 0.119 0.881
27 H 0.101 0.899
28 H 0.131 0.869
29 H 0.208 0.792
30 H 0.171 0.829
31 H 0.089 0.911
32 H 0.093 0.907
33 H 0.080 0.920
34 H 0.093 0.907
35 H 0.086 0.914
36 H 0.103 0.897
37 H 0.090 0.910
38 H 0.091 0.909
39 H 0.086 0.914
40 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -11.338 -3.399 2.770 12.157
hybrid contribution 0.390 1.362 -0.078 1.419
sum -10.948 -2.037 2.692 11.457
Atomic orbital electron populations
1.20968 0.84143 1.05559 1.05018 1.22287 0.99233 0.86774 0.89253
1.22574 0.93784 1.01317 1.02262 1.21605 0.95947 0.96262 0.88333
1.33005 1.34354 0.98112 1.15190 1.11965 0.74246 0.73689 0.76669
1.93343 1.78341 1.38328 1.86673 1.93283 1.83305 1.64998 1.60378
1.52806 1.69954 1.11427 1.28524 1.19391 1.24502 1.07528 0.90085
0.88434 1.26551 0.92300 1.02217 0.98424 1.69975 1.13745 1.29102
1.31289 0.85278 0.79575 0.77946 0.78222 1.16739 1.19346 1.21131
1.22101 0.96053 0.79966 0.98517 1.23026 0.98209 0.97513 0.98823
1.22270 0.94647 0.96101 1.02210 1.22042 0.96929 0.96625 0.99296
1.22362 0.96045 0.99054 0.98940 1.21168 0.90119 0.86900 0.94567
1.98409 1.75114 1.29217 1.95638 1.66992 1.07438 1.31806 1.16062
0.88093 0.89944 0.86946 0.79241 0.82878 0.91118 0.90701 0.92031
0.90678 0.91448 0.89713 0.91034 0.90905 0.91438 0.93988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 25.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.65 10.17 71.24 0.72 -0.92 16
2 C 0.16 4.59 6.78 42.54 0.29 4.88 16
3 C -0.18 -4.99 9.74 22.36 0.22 -4.77 16
4 C 0.00 0.18 9.66 22.46 0.22 0.40 16
5 C -0.73 -32.17 5.93 22.38 0.13 -32.04 16
6 S 2.53 131.44 4.94 -56.49 -0.28 131.16 16
7 O -0.98 -55.30 13.08 -128.00 -1.67 -56.97 16
8 O -1.03 -57.66 15.26 -128.00 -1.95 -59.61 16
9 N -0.80 -38.84 2.74 -317.29 -0.87 -39.71 16
10 C -0.27 -12.75 7.58 84.03 0.64 -12.11 16
11 H 0.10 4.33 6.72 -2.91 -0.02 4.32 16
12 C 0.02 1.03 4.00 84.86 0.34 1.37 16
13 N -0.80 -43.82 11.56 21.65 0.25 -43.57 16
14 Si 0.97 38.99 29.62 68.60 2.03 41.03 16
15 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16
16 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16
17 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16
18 C 0.14 5.97 2.10 46.19 0.10 6.07 16
19 C -0.14 -4.78 6.09 32.00 0.19 -4.58 16
20 C -0.11 -3.19 6.82 31.67 0.22 -2.97 16
21 C -0.11 -3.29 6.80 31.32 0.21 -3.08 16
22 C -0.12 -4.96 6.42 31.32 0.20 -4.76 16
23 C 0.24 9.89 7.26 84.70 0.61 10.50 16
24 Cl -0.01 -0.51 20.58 -2.72 -0.06 -0.56 16
25 N -0.51 -18.42 10.25 -174.84 -1.79 -20.22 16
26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
28 H 0.11 1.15 8.08 -2.39 -0.02 1.13 16
29 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16
30 H 0.15 5.61 7.44 -2.91 -0.02 5.59 16
31 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16
32 H 0.08 3.33 4.45 -2.38 -0.01 3.32 16
33 H 0.06 2.12 6.09 -2.39 -0.01 2.11 16
34 H 0.07 2.68 6.50 -2.39 -0.02 2.67 16
35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
39 H 0.07 3.01 7.08 -2.38 -0.02 2.99 16
40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
Total: -1.00 -69.51 338.42 0.82 -68.69
By element:
Atomic # 1 Polarization: 20.69 SS G_CDS: 1.07 Total: 21.77 kcal
Atomic # 6 Polarization: -46.10 SS G_CDS: 4.09 Total: -42.01 kcal
Atomic # 7 Polarization: -101.08 SS G_CDS: -2.41 Total: -103.49 kcal
Atomic # 8 Polarization: -112.95 SS G_CDS: -3.63 Total: -116.58 kcal
Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.03 kcal
Atomic # 16 Polarization: 131.44 SS G_CDS: -0.28 Total: 131.16 kcal
Atomic # 17 Polarization: -0.51 SS G_CDS: -0.06 Total: -0.56 kcal
Total: -69.51 0.82 -68.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000190424222.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.958 kcal
(2) G-P(sol) polarization free energy of solvation -69.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds