Wall clock time and date at job start Sat Apr 11 2020 07:01:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.38348 * 127.15357 * 2 1
4 4 C 1.39772 * 126.56236 * 359.97438 * 3 2 1
5 5 H 1.07994 * 120.00476 * 0.02562 * 4 3 2
6 6 C 1.40084 * 120.00095 * 180.02562 * 4 3 2
7 7 N 1.30822 * 119.99533 * 0.02562 * 6 4 3
8 8 Si 1.86793 * 120.00516 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47364 * 89.99652 * 8 6 4
10 10 H 1.48503 * 109.47529 * 210.00137 * 8 6 4
11 11 H 1.48504 * 109.46784 * 330.00073 * 8 6 4
12 12 N 1.33094 * 106.86984 * 180.02562 * 3 2 1
13 13 N 1.28510 * 109.75082 * 0.02562 * 12 3 2
14 14 C 1.32394 * 110.20307 * 359.97438 * 13 12 3
15 15 S 1.76197 * 126.25806 * 179.74108 * 14 13 12
16 16 C 1.80990 * 100.00311 * 0.02562 * 15 14 13
17 17 N 1.46503 * 109.46975 * 75.00049 * 16 15 14
18 18 C 1.34525 * 124.46008 * 269.69733 * 17 16 15
19 19 O 1.21445 * 125.70963 * 0.03977 * 18 17 16
20 20 C 1.47815 * 108.58076 * 179.90550 * 18 17 16
21 21 C 1.38565 * 134.30383 * 180.12666 * 20 18 17
22 22 C 1.38607 * 119.72089 * 180.28565 * 21 20 18
23 23 C 1.38226 * 120.46484 * 359.96095 * 22 21 20
24 24 C 1.38618 * 120.45426 * 0.02562 * 23 22 21
25 25 C 1.38562 * 119.72106 * 359.97438 * 24 23 22
26 26 C 1.34525 * 124.45726 * 90.00106 * 17 16 15
27 27 O 1.21451 * 125.71381 * 359.94144 * 26 17 16
28 28 H 1.08999 * 109.47319 * 269.99882 * 1 2 3
29 29 H 1.09004 * 109.46984 * 30.00332 * 1 2 3
30 30 H 1.08997 * 109.47118 * 150.00118 * 1 2 3
31 31 H 0.97002 * 119.99448 * 179.97438 * 7 6 4
32 32 H 1.08996 * 109.47433 * 195.00167 * 16 15 14
33 33 H 1.09003 * 109.47482 * 315.00104 * 16 15 14
34 34 H 1.07996 * 120.13353 * 0.24899 * 21 20 18
35 35 H 1.08009 * 119.76972 * 179.97438 * 22 21 20
36 36 H 1.07995 * 119.77564 * 180.02562 * 23 22 21
37 37 H 1.08000 * 120.13788 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3006 1.1027 0.0000
4 6 1.9086 2.4443 -0.0005
5 1 0.8595 2.7005 -0.0005
6 6 2.8767 3.4568 -0.0010
7 7 4.1476 3.1465 -0.0014
8 14 2.3531 5.2498 -0.0009
9 1 2.2148 5.7252 1.3992
10 1 3.3779 6.0649 -0.7015
11 1 1.0501 5.3850 -0.7005
12 7 3.5490 0.6413 -0.0006
13 7 3.5370 -0.6438 -0.0015
14 6 2.2903 -1.0894 -0.0010
15 16 1.7873 -2.7780 -0.0082
16 6 3.4058 -3.5882 -0.0149
17 7 4.0047 -3.4935 1.3187
18 6 4.7998 -2.4878 1.7264
19 8 5.1290 -1.5289 1.0579
20 6 5.2028 -2.7436 3.1254
21 6 5.9923 -2.0701 4.0436
22 6 6.1779 -2.6012 5.3104
23 6 5.5805 -3.7965 5.6637
24 6 4.7879 -4.4812 4.7556
25 6 4.5934 -3.9624 3.4856
26 6 3.8369 -4.4038 2.2948
27 8 3.1742 -5.4182 2.2119
28 1 -0.3634 0.0000 1.0276
29 1 -0.3633 0.8900 -0.5139
30 1 -0.3633 -0.8900 -0.5138
31 1 4.8179 3.8477 -0.0022
32 1 3.2859 -4.6371 -0.2858
33 1 4.0547 -3.0975 -0.7404
34 1 6.4615 -1.1358 3.7731
35 1 6.7935 -2.0771 6.0267
36 1 5.7323 -4.1999 6.6539
37 1 4.3239 -5.4150 5.0369
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000794474280.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:48
Heat of formation + Delta-G solvation = 86.751421 kcal
Electronic energy + Delta-G solvation = -27267.984508 eV
Core-core repulsion = 23333.183280 eV
Total energy + Delta-G solvation = -3934.801228 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.073 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.97483 -40.45823 -38.40423 -38.14904 -35.41913 -33.68228 -33.29764 -32.16186
-31.14565 -29.29053 -27.69500 -26.44090 -25.46207 -24.83759 -23.07764 -22.02477
-20.82508 -20.48434 -19.77171 -17.64411 -17.41270 -17.07671 -16.86459 -16.30398
-15.75655 -15.39951 -15.00198 -14.71011 -14.61510 -14.44868 -14.25269 -13.96833
-13.64851 -13.56130 -13.34345 -12.83159 -12.53102 -12.36851 -12.24847 -12.20219
-11.71816 -11.45416 -11.30851 -10.96151 -10.78802 -10.40558 -10.36609 -10.13729
-9.64406 -9.49960 -9.27363 -9.17267 -9.03316 -8.66652 -8.44919 -8.21485
-6.96216 -6.63367 -4.56207 0.21754 0.94248 1.82058 2.19744 2.42069
2.68738 2.91867 3.06126 3.09496 3.34542 3.44846 3.66081 3.78787
3.87545 4.25362 4.48332 4.51344 4.61358 4.78636 4.93120 5.02903
5.19607 5.34880 5.35761 5.43841 5.55244 5.61288 5.74296 5.88750
5.95712 6.03996 6.05619 6.11768 6.53771 6.78976 6.90511 6.93796
7.25908 7.51523 7.52203 7.87214 8.18245 8.19841 8.71443 8.88226
10.28638 10.70208
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.013036 B = 0.004007 C = 0.003330
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2147.446233 B = 6986.811210 C = 8405.280903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.102 3.898
2 N -0.514 5.514
3 C 0.345 3.655
4 C -0.448 4.448
5 H 0.083 0.917
6 C 0.079 3.921
7 N -0.733 5.733
8 Si 0.919 3.081
9 H -0.269 1.269
10 H -0.275 1.275
11 H -0.263 1.263
12 N -0.323 5.323
13 N -0.236 5.236
14 C 0.012 3.988
15 S -0.043 6.043
16 C 0.138 3.862
17 N -0.566 5.566
18 C 0.523 3.477
19 O -0.349 6.349
20 C -0.117 4.117
21 C -0.053 4.053
22 C -0.096 4.096
23 C -0.109 4.109
24 C -0.049 4.049
25 C -0.144 4.144
26 C 0.578 3.422
27 O -0.480 6.480
28 H 0.054 0.946
29 H 0.077 0.923
30 H 0.064 0.936
31 H 0.279 0.721
32 H 0.131 0.869
33 H 0.128 0.872
34 H 0.142 0.858
35 H 0.138 0.862
36 H 0.137 0.863
37 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.182 -11.084 8.406 13.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.217 5.217
3 C 0.101 3.899
4 C -0.488 4.488
5 H 0.101 0.899
6 C -0.147 4.147
7 N -0.357 5.357
8 Si 0.743 3.257
9 H -0.194 1.194
10 H -0.200 1.200
11 H -0.187 1.187
12 N -0.171 5.171
13 N -0.084 5.084
14 C -0.358 4.358
15 S 0.184 5.816
16 C -0.094 4.094
17 N -0.311 5.311
18 C 0.307 3.693
19 O -0.209 6.209
20 C -0.121 4.121
21 C -0.072 4.072
22 C -0.114 4.114
23 C -0.127 4.127
24 C -0.068 4.068
25 C -0.148 4.148
26 C 0.366 3.634
27 O -0.353 6.353
28 H 0.072 0.928
29 H 0.096 0.904
30 H 0.083 0.917
31 H 0.090 0.910
32 H 0.148 0.852
33 H 0.147 0.853
34 H 0.160 0.840
35 H 0.156 0.844
36 H 0.155 0.845
37 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 1.661 -11.511 7.827 14.019
hybrid contribution -0.730 1.536 0.043 1.701
sum 0.931 -9.975 7.870 12.740
Atomic orbital electron populations
1.21470 0.78775 1.02581 1.01452 1.46011 1.05902 1.05283 1.64504
1.21693 0.84918 0.88366 0.94893 1.18096 0.94630 0.86540 1.49529
0.89935 1.25784 0.94350 1.01174 0.93373 1.70029 1.00641 1.34889
1.30148 0.86147 0.79399 0.80994 0.79154 1.19417 1.19978 1.18687
1.75534 1.14744 0.98031 1.28802 1.74880 1.13031 1.07224 1.13299
1.25392 0.92155 0.92328 1.25915 1.84767 1.09687 0.93014 1.94113
1.23415 0.96636 1.04646 0.84724 1.46983 1.46541 1.23627 1.13953
1.18498 0.81051 0.82541 0.87253 1.91215 1.46206 1.24021 1.59432
1.20820 0.99583 0.96281 0.95432 1.20852 0.95271 0.99347 0.91710
1.21421 0.98630 0.95591 0.95791 1.21354 0.96622 0.95147 0.99600
1.20725 0.96119 0.99538 0.90443 1.20625 1.01207 0.97383 0.95551
1.18313 0.79535 0.82080 0.83480 1.90752 1.38271 1.23926 1.82358
0.92784 0.90389 0.91690 0.91024 0.85152 0.85347 0.84039 0.84432
0.84520 0.84461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.92 10.88 59.85 0.65 2.58 16
2 N -0.51 -12.62 3.26 -123.18 -0.40 -13.03 16
3 C 0.35 9.71 7.53 -154.82 -1.17 8.55 16
4 C -0.45 -11.96 9.05 -38.32 -0.35 -12.30 16
5 H 0.08 2.01 7.30 -52.49 -0.38 1.62 16
6 C 0.08 2.02 5.50 -17.29 -0.10 1.93 16
7 N -0.73 -20.23 11.94 55.56 0.66 -19.57 16
8 Si 0.92 18.62 29.56 -169.99 -5.03 13.59 16
9 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16
10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16
12 N -0.32 -9.69 10.48 31.26 0.33 -9.37 16
13 N -0.24 -6.39 6.66 30.89 0.21 -6.19 16
14 C 0.01 0.28 8.03 -87.27 -0.70 -0.42 16
15 S -0.04 -0.80 22.10 -107.50 -2.38 -3.17 16
16 C 0.14 2.28 6.00 59.85 0.36 2.64 16
17 N -0.57 -9.83 2.65 -121.85 -0.32 -10.16 16
18 C 0.52 10.01 7.67 -12.46 -0.10 9.91 16
19 O -0.35 -8.15 13.30 5.41 0.07 -8.08 16
20 C -0.12 -1.84 6.41 -104.83 -0.67 -2.51 16
21 C -0.05 -0.69 10.09 -39.32 -0.40 -1.08 16
22 C -0.10 -0.91 10.03 -39.45 -0.40 -1.30 16
23 C -0.11 -0.94 10.04 -39.45 -0.40 -1.34 16
24 C -0.05 -0.53 10.09 -39.32 -0.40 -0.93 16
25 C -0.14 -2.05 6.41 -104.83 -0.67 -2.72 16
26 C 0.58 9.36 8.02 -12.45 -0.10 9.26 16
27 O -0.48 -8.26 17.68 5.41 0.10 -8.17 16
28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16
30 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16
31 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16
32 H 0.13 1.72 7.97 -51.92 -0.41 1.30 16
33 H 0.13 2.23 7.65 -51.91 -0.40 1.83 16
34 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16
35 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16
36 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16
37 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16
LS Contribution 341.63 15.07 5.15 5.15
Total: -1.00 -35.78 341.63 -9.27 -45.05
By element:
Atomic # 1 Polarization: 4.90 SS G_CDS: -3.24 Total: 1.66 kcal
Atomic # 6 Polarization: 16.70 SS G_CDS: -4.42 Total: 12.27 kcal
Atomic # 7 Polarization: -58.78 SS G_CDS: 0.47 Total: -58.31 kcal
Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.25 kcal
Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal
Atomic # 16 Polarization: -0.80 SS G_CDS: -2.38 Total: -3.17 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -35.78 -9.27 -45.05 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000794474280.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.804 kcal
(2) G-P(sol) polarization free energy of solvation -35.778 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds