Wall clock time and date at job start Sat Apr 11 2020 07:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.38348 * 127.15357 * 2 1
4 4 C 1.39772 * 126.56236 * 359.97438 * 3 2 1
5 5 H 1.07994 * 120.00476 * 0.02562 * 4 3 2
6 6 C 1.40084 * 120.00095 * 180.02562 * 4 3 2
7 7 N 1.30822 * 119.99533 * 0.02562 * 6 4 3
8 8 Si 1.86793 * 120.00516 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47364 * 89.99652 * 8 6 4
10 10 H 1.48503 * 109.47529 * 210.00137 * 8 6 4
11 11 H 1.48504 * 109.46784 * 330.00073 * 8 6 4
12 12 N 1.33094 * 106.86984 * 180.02562 * 3 2 1
13 13 N 1.28510 * 109.75082 * 0.02562 * 12 3 2
14 14 C 1.32394 * 110.20307 * 359.97438 * 13 12 3
15 15 S 1.76197 * 126.25806 * 179.74108 * 14 13 12
16 16 C 1.80990 * 100.00311 * 0.02562 * 15 14 13
17 17 N 1.46503 * 109.46975 * 75.00049 * 16 15 14
18 18 C 1.34525 * 124.46008 * 269.69733 * 17 16 15
19 19 O 1.21445 * 125.70963 * 0.03977 * 18 17 16
20 20 C 1.47815 * 108.58076 * 179.90550 * 18 17 16
21 21 C 1.38565 * 134.30383 * 180.12666 * 20 18 17
22 22 C 1.38607 * 119.72089 * 180.28565 * 21 20 18
23 23 C 1.38226 * 120.46484 * 359.96095 * 22 21 20
24 24 C 1.38618 * 120.45426 * 0.02562 * 23 22 21
25 25 C 1.38562 * 119.72106 * 359.97438 * 24 23 22
26 26 C 1.34525 * 124.45726 * 90.00106 * 17 16 15
27 27 O 1.21451 * 125.71381 * 359.94144 * 26 17 16
28 28 H 1.08999 * 109.47319 * 269.99882 * 1 2 3
29 29 H 1.09004 * 109.46984 * 30.00332 * 1 2 3
30 30 H 1.08997 * 109.47118 * 150.00118 * 1 2 3
31 31 H 0.97002 * 119.99448 * 179.97438 * 7 6 4
32 32 H 1.08996 * 109.47433 * 195.00167 * 16 15 14
33 33 H 1.09003 * 109.47482 * 315.00104 * 16 15 14
34 34 H 1.07996 * 120.13353 * 0.24899 * 21 20 18
35 35 H 1.08009 * 119.76972 * 179.97438 * 22 21 20
36 36 H 1.07995 * 119.77564 * 180.02562 * 23 22 21
37 37 H 1.08000 * 120.13788 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3006 1.1027 0.0000
4 6 1.9086 2.4443 -0.0005
5 1 0.8595 2.7005 -0.0005
6 6 2.8767 3.4568 -0.0010
7 7 4.1476 3.1465 -0.0014
8 14 2.3531 5.2498 -0.0009
9 1 2.2148 5.7252 1.3992
10 1 3.3779 6.0649 -0.7015
11 1 1.0501 5.3850 -0.7005
12 7 3.5490 0.6413 -0.0006
13 7 3.5370 -0.6438 -0.0015
14 6 2.2903 -1.0894 -0.0010
15 16 1.7873 -2.7780 -0.0082
16 6 3.4058 -3.5882 -0.0149
17 7 4.0047 -3.4935 1.3187
18 6 4.7998 -2.4878 1.7264
19 8 5.1290 -1.5289 1.0579
20 6 5.2028 -2.7436 3.1254
21 6 5.9923 -2.0701 4.0436
22 6 6.1779 -2.6012 5.3104
23 6 5.5805 -3.7965 5.6637
24 6 4.7879 -4.4812 4.7556
25 6 4.5934 -3.9624 3.4856
26 6 3.8369 -4.4038 2.2948
27 8 3.1742 -5.4182 2.2119
28 1 -0.3634 0.0000 1.0276
29 1 -0.3633 0.8900 -0.5139
30 1 -0.3633 -0.8900 -0.5138
31 1 4.8179 3.8477 -0.0022
32 1 3.2859 -4.6371 -0.2858
33 1 4.0547 -3.0975 -0.7404
34 1 6.4615 -1.1358 3.7731
35 1 6.7935 -2.0771 6.0267
36 1 5.7323 -4.1999 6.6539
37 1 4.3239 -5.4150 5.0369
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000794474280.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:01:47
Heat of formation + Delta-G solvation = 64.069689 kcal
Electronic energy + Delta-G solvation = -27268.968062 eV
Core-core repulsion = 23333.183280 eV
Total energy + Delta-G solvation = -3935.784782 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.073 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-43.22687 -42.39752 -39.60571 -39.36942 -36.82613 -35.61470 -35.13279 -33.26969
-32.07149 -31.25979 -28.94942 -28.16215 -27.34968 -26.05364 -24.12658 -23.15325
-22.75933 -22.34765 -20.96627 -19.28550 -18.73811 -18.57516 -18.25203 -17.50995
-17.30900 -17.05697 -16.49867 -16.24952 -16.15826 -15.64880 -15.33221 -15.30759
-15.04443 -15.00515 -14.96680 -14.07995 -13.92967 -13.83576 -13.62514 -13.21909
-13.17905 -12.96398 -12.78847 -12.70729 -12.35892 -11.99158 -11.83818 -11.59368
-11.43786 -11.03545 -10.74827 -10.49582 -10.29846 -10.24025 -10.17299 -10.02811
-8.72809 -8.53378 -6.58110 -0.88730 -0.00711 0.30014 0.87422 1.08098
1.19948 1.29324 1.39791 1.56484 1.62775 2.09658 2.17658 2.51029
2.53150 2.64058 2.70730 3.32583 3.36826 3.64882 3.69760 4.03496
4.06234 4.07411 4.20576 4.24857 4.31963 4.39669 4.51845 4.56127
4.86045 4.90123 4.96258 5.02317 5.23077 5.28299 5.33071 5.58243
5.60243 5.74056 6.04322 6.21776 6.26166 6.74420 6.77216 6.94300
8.41928 8.72478
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.013036 B = 0.004007 C = 0.003330
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2147.446233 B = 6986.811210 C = 8405.280903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.096 3.904
2 N -0.522 5.522
3 C 0.315 3.685
4 C -0.474 4.474
5 H 0.100 0.900
6 C 0.030 3.970
7 N -0.786 5.786
8 Si 1.006 2.994
9 H -0.261 1.261
10 H -0.270 1.270
11 H -0.248 1.248
12 N -0.377 5.377
13 N -0.262 5.262
14 C 0.014 3.986
15 S -0.002 6.002
16 C 0.134 3.866
17 N -0.571 5.571
18 C 0.519 3.481
19 O -0.411 6.411
20 C -0.153 4.153
21 C -0.066 4.066
22 C -0.081 4.081
23 C -0.085 4.085
24 C -0.040 4.040
25 C -0.160 4.160
26 C 0.579 3.421
27 O -0.491 6.491
28 H 0.068 0.932
29 H 0.088 0.912
30 H 0.088 0.912
31 H 0.283 0.717
32 H 0.168 0.832
33 H 0.114 0.886
34 H 0.130 0.870
35 H 0.177 0.823
36 H 0.188 0.812
37 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.034 -12.279 11.277 16.672
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.047 4.047
2 N -0.225 5.225
3 C 0.069 3.931
4 C -0.514 4.514
5 H 0.118 0.882
6 C -0.191 4.191
7 N -0.410 5.410
8 Si 0.824 3.176
9 H -0.185 1.185
10 H -0.195 1.195
11 H -0.172 1.172
12 N -0.225 5.225
13 N -0.109 5.109
14 C -0.358 4.358
15 S 0.224 5.776
16 C -0.099 4.099
17 N -0.316 5.316
18 C 0.305 3.695
19 O -0.275 6.275
20 C -0.157 4.157
21 C -0.085 4.085
22 C -0.099 4.099
23 C -0.103 4.103
24 C -0.059 4.059
25 C -0.163 4.163
26 C 0.369 3.631
27 O -0.365 6.365
28 H 0.087 0.913
29 H 0.107 0.893
30 H 0.107 0.893
31 H 0.094 0.906
32 H 0.185 0.815
33 H 0.133 0.867
34 H 0.148 0.852
35 H 0.194 0.806
36 H 0.205 0.795
37 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 0.496 -12.756 10.714 16.666
hybrid contribution -0.353 1.634 -0.716 1.819
sum 0.143 -11.121 9.998 14.955
Atomic orbital electron populations
1.21791 0.75721 1.04306 1.02917 1.46349 1.07842 1.04484 1.63787
1.22126 0.85334 0.89824 0.95806 1.18602 0.95846 0.86615 1.50312
0.88194 1.26968 0.93879 1.06366 0.91865 1.70190 1.02339 1.36859
1.31654 0.84871 0.79367 0.73792 0.79524 1.18538 1.19501 1.17170
1.75411 1.16677 0.99580 1.30806 1.74887 1.14573 1.06418 1.15007
1.26431 0.91862 0.95072 1.22407 1.84479 1.10631 0.88679 1.93794
1.23595 0.95394 1.06157 0.84768 1.47031 1.46386 1.23784 1.14362
1.19198 0.79970 0.81698 0.88612 1.91186 1.48898 1.26232 1.61211
1.20697 1.02637 0.98275 0.94118 1.21064 0.95096 0.99206 0.93099
1.21884 0.97889 0.95796 0.94340 1.21948 0.93708 0.93715 1.00892
1.21209 0.95491 1.00304 0.88849 1.20598 1.02054 0.97211 0.96464
1.18619 0.79212 0.81445 0.83809 1.90734 1.38929 1.24182 1.82691
0.91333 0.89313 0.89337 0.90645 0.81454 0.86749 0.85213 0.80582
0.79508 0.81761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.54 10.88 127.77 1.39 4.93 16
2 N -0.52 -26.32 3.26 -543.63 -1.77 -28.10 16
3 C 0.32 18.57 7.53 133.23 1.00 19.57 16
4 C -0.47 -26.08 9.05 23.09 0.21 -25.87 16
5 H 0.10 4.90 7.30 -2.91 -0.02 4.88 16
6 C 0.03 1.58 5.50 85.29 0.47 2.05 16
7 N -0.79 -45.68 11.94 21.86 0.26 -45.42 16
8 Si 1.01 38.63 29.56 68.60 2.03 40.66 16
9 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16
10 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16
11 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16
12 N -0.38 -24.19 10.48 -55.03 -0.58 -24.76 16
13 N -0.26 -15.17 6.66 -56.17 -0.37 -15.54 16
14 C 0.01 0.69 8.03 179.18 1.44 2.13 16
15 S 0.00 -0.07 22.10 -56.49 -1.25 -1.32 16
16 C 0.13 4.51 6.00 127.77 0.77 5.27 16
17 N -0.57 -20.52 2.65 -776.33 -2.06 -22.58 16
18 C 0.52 21.25 7.67 86.82 0.67 21.91 16
19 O -0.41 -21.06 13.30 -3.54 -0.05 -21.11 16
20 C -0.15 -4.95 6.41 -20.00 -0.13 -5.08 16
21 C -0.07 -1.70 10.09 22.44 0.23 -1.47 16
22 C -0.08 -1.24 10.03 22.36 0.22 -1.02 16
23 C -0.09 -1.02 10.04 22.36 0.22 -0.79 16
24 C -0.04 -0.71 10.09 22.44 0.23 -0.48 16
25 C -0.16 -4.38 6.41 -20.00 -0.13 -4.51 16
26 C 0.58 18.61 8.02 86.82 0.70 19.31 16
27 O -0.49 -16.32 17.68 -3.56 -0.06 -16.38 16
28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
29 H 0.09 3.07 7.53 -2.38 -0.02 3.05 16
30 H 0.09 2.82 7.84 -2.39 -0.02 2.80 16
31 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16
32 H 0.17 4.29 7.97 -2.40 -0.02 4.28 16
33 H 0.11 4.24 7.65 -2.39 -0.02 4.22 16
34 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16
35 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16
36 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16
37 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16
Total: -1.00 -86.53 341.63 4.58 -81.95
By element:
Atomic # 1 Polarization: 15.49 SS G_CDS: 1.14 Total: 16.63 kcal
Atomic # 6 Polarization: 28.68 SS G_CDS: 7.28 Total: 35.96 kcal
Atomic # 7 Polarization: -131.88 SS G_CDS: -4.52 Total: -136.40 kcal
Atomic # 8 Polarization: -37.38 SS G_CDS: -0.11 Total: -37.49 kcal
Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal
Atomic # 16 Polarization: -0.07 SS G_CDS: -1.25 Total: -1.32 kcal
Total: -86.53 4.58 -81.95 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000794474280.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.024 kcal
(2) G-P(sol) polarization free energy of solvation -86.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.954 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds