Wall clock time and date at job start Sat Apr 11 2020 07:02:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86796 * 120.00108 * 2 1
4 4 H 1.48502 * 109.47248 * 240.00152 * 3 2 1
5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1
6 6 H 1.48507 * 109.47231 * 120.00060 * 3 2 1
7 7 C 1.38816 * 119.99990 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99661 * 195.46772 * 7 2 1
9 9 N 1.36938 * 119.99931 * 15.46924 * 7 2 1
10 10 C 1.47512 * 118.75822 * 26.09439 * 9 7 2
11 11 C 1.53562 * 111.02569 * 138.37451 * 10 9 7
12 12 C 1.51545 * 109.58407 * 320.02236 * 11 10 9
13 13 O 1.42156 * 108.76081 * 91.39806 * 12 11 10
14 14 C 1.38012 * 119.43876 * 272.77638 * 13 12 11
15 15 H 1.08994 * 109.46968 * 303.43073 * 14 13 12
16 16 C 1.52999 * 109.46958 * 183.42856 * 14 13 12
17 17 N 1.46503 * 109.46889 * 65.00285 * 16 14 13
18 18 C 1.34770 * 120.00092 * 179.97438 * 17 16 14
19 19 O 1.21719 * 120.00220 * 0.02562 * 18 17 16
20 20 C 1.46468 * 120.00215 * 180.02562 * 18 17 16
21 21 C 1.36693 * 125.44869 * 180.02562 * 20 18 17
22 22 C 1.37403 * 113.31584 * 179.97438 * 21 20 18
23 23 C 1.34013 * 115.07069 * 0.02562 * 22 21 20
24 24 Cl 1.73600 * 124.53010 * 179.97438 * 23 22 21
25 25 S 1.70617 * 110.93900 * 359.97438 * 23 22 21
26 26 C 1.45124 * 118.75563 * 206.09794 * 9 7 2
27 27 H 0.97002 * 119.99326 * 0.02562 * 1 2 3
28 28 H 1.08997 * 109.16250 * 17.97630 * 10 9 7
29 29 H 1.08994 * 109.12233 * 258.74752 * 10 9 7
30 30 H 1.09003 * 109.45686 * 199.98519 * 11 10 9
31 31 H 1.09004 * 109.45218 * 80.05342 * 11 10 9
32 32 H 1.08995 * 109.58608 * 331.61493 * 12 11 10
33 33 H 1.09000 * 109.58789 * 211.18553 * 12 11 10
34 34 H 1.08998 * 109.47444 * 305.00393 * 16 14 13
35 35 H 1.08998 * 109.46974 * 184.99935 * 16 14 13
36 36 H 0.97002 * 119.99713 * 359.97438 * 17 16 14
37 37 H 1.07998 * 123.34110 * 359.73077 * 21 20 18
38 38 H 1.07999 * 122.46631 * 179.97438 * 22 21 20
39 39 H 1.08992 * 109.45927 * 149.26850 * 26 9 7
40 40 H 1.08997 * 109.45933 * 29.30502 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1041 1.6964 1.2125
7 6 2.0103 -1.2022 -0.0005
8 1 3.0610 -1.2192 0.2489
9 7 1.3628 -2.3665 -0.3174
10 6 0.1711 -2.3025 -1.1844
11 6 0.1767 -3.4421 -2.2137
12 6 1.5843 -3.6476 -2.7362
13 8 2.2338 -4.6213 -1.9294
14 6 2.8927 -4.2231 -0.7839
15 1 3.6427 -3.4742 -1.0380
16 6 3.5762 -5.4322 -0.1422
17 7 4.6225 -5.9334 -1.0368
18 6 5.3625 -7.0007 -0.6769
19 8 5.1612 -7.5486 0.3911
20 6 6.4090 -7.5015 -1.5710
21 6 7.2217 -8.5713 -1.3194
22 6 8.1172 -8.8238 -2.3304
23 6 8.0428 -7.9893 -3.3764
24 17 9.0548 -8.0828 -4.7838
25 16 6.8204 -6.8227 -3.1399
26 6 1.8750 -3.6166 0.2126
27 1 -0.4849 0.8401 -0.0004
28 1 0.1608 -1.3469 -1.7085
29 1 -0.7240 -2.3819 -0.5674
30 1 -0.4842 -3.1865 -3.0419
31 1 -0.1726 -4.3600 -1.7409
32 1 2.1332 -2.7073 -2.6871
33 1 1.5438 -3.9961 -3.7681
34 1 2.8395 -6.2167 0.0306
35 1 4.0214 -5.1361 0.8076
36 1 4.7827 -5.4969 -1.8882
37 1 7.1680 -9.1575 -0.4139
38 1 8.8293 -9.6345 -2.2852
39 1 1.0502 -4.3140 0.3588
40 1 2.3675 -3.4317 1.1672
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001073877219.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:24
Heat of formation + Delta-G solvation = -26.897245 kcal
Electronic energy + Delta-G solvation = -25190.011049 eV
Core-core repulsion = 21351.389139 eV
Total energy + Delta-G solvation = -3838.621910 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.075 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-39.94779 -38.92935 -38.08206 -36.89462 -35.31657 -34.70911 -32.27562 -31.54171
-30.19552 -28.46946 -25.98290 -25.47410 -24.75585 -22.91202 -21.44988 -20.92008
-19.80375 -19.61881 -18.84739 -17.05956 -16.64838 -16.26947 -16.12125 -15.68126
-15.27460 -15.07317 -14.79132 -14.27742 -14.08532 -13.78123 -13.72847 -13.53407
-13.05305 -12.97067 -12.78840 -12.35682 -12.13217 -11.85608 -11.74739 -11.44692
-11.24013 -11.22186 -11.01374 -10.90102 -10.70061 -10.31070 -10.18217 -9.90384
-9.80266 -9.74823 -9.24174 -9.06389 -8.96147 -8.86952 -8.47105 -6.80267
-5.87910 -3.33043 -0.00411 0.61172 1.30683 1.72464 1.92870 3.02500
3.05496 3.31897 3.38282 3.38653 4.09921 4.40748 4.62242 4.73139
4.93157 5.12583 5.30955 5.40365 5.46996 5.54540 5.63441 5.66091
5.79878 5.82468 5.92258 5.96518 6.11795 6.19545 6.30442 6.39921
6.50804 6.66778 6.70537 6.77776 7.31347 7.37889 7.59421 7.72563
8.04011 8.15617 8.35136 9.12954 9.77575 10.23566 11.19587
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.016160 B = 0.002428 C = 0.002354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1732.268942 B =11530.865922 C =11893.625720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.008 3.992
3 Si 0.903 3.097
4 H -0.283 1.283
5 H -0.290 1.290
6 H -0.282 1.282
7 C -0.268 4.268
8 H 0.066 0.934
9 N -0.591 5.591
10 C 0.177 3.823
11 C -0.176 4.176
12 C 0.088 3.912
13 O -0.396 6.396
14 C 0.065 3.935
15 H 0.053 0.947
16 C 0.132 3.868
17 N -0.713 5.713
18 C 0.587 3.413
19 O -0.529 6.529
20 C -0.252 4.252
21 C -0.053 4.053
22 C -0.134 4.134
23 C -0.172 4.172
24 Cl -0.009 7.009
25 S 0.258 5.742
26 C 0.129 3.871
27 H 0.255 0.745
28 H 0.075 0.925
29 H 0.028 0.972
30 H 0.061 0.939
31 H 0.058 0.942
32 H 0.062 0.938
33 H 0.070 0.930
34 H 0.077 0.923
35 H 0.085 0.915
36 H 0.400 0.600
37 H 0.163 0.837
38 H 0.154 0.846
39 H 0.044 0.956
40 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.710 -15.311 -8.894 22.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.191 4.191
3 Si 0.732 3.268
4 H -0.210 1.210
5 H -0.216 1.216
6 H -0.208 1.208
7 C -0.397 4.397
8 H 0.084 0.916
9 N -0.312 5.312
10 C 0.052 3.948
11 C -0.216 4.216
12 C 0.012 3.988
13 O -0.316 6.316
14 C 0.003 3.997
15 H 0.070 0.930
16 C 0.009 3.991
17 N -0.363 5.363
18 C 0.372 3.628
19 O -0.407 6.407
20 C -0.373 4.373
21 C -0.086 4.086
22 C -0.167 4.167
23 C -0.318 4.318
24 Cl 0.019 6.981
25 S 0.524 5.476
26 C -0.001 4.001
27 H 0.065 0.935
28 H 0.094 0.906
29 H 0.046 0.954
30 H 0.079 0.921
31 H 0.076 0.924
32 H 0.080 0.920
33 H 0.088 0.912
34 H 0.095 0.905
35 H 0.103 0.897
36 H 0.234 0.766
37 H 0.180 0.820
38 H 0.172 0.828
39 H 0.063 0.937
40 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 12.914 -14.471 -9.158 21.448
hybrid contribution 1.192 0.190 0.250 1.233
sum 14.106 -14.281 -8.907 21.960
Atomic orbital electron populations
1.70063 1.05259 1.25735 1.53501 1.25048 0.95291 0.98440 1.00361
0.86375 0.78933 0.83288 0.78188 1.20984 1.21572 1.20780 1.19173
0.92376 0.84871 1.43301 0.91611 1.43831 1.31487 1.01521 1.54388
1.21002 0.88443 0.95465 0.89912 1.22770 0.97040 1.01333 1.00420
1.22028 0.92818 0.92190 0.91796 1.86070 1.70709 1.38036 1.36756
1.22654 0.95003 0.93737 0.88308 0.92956 1.21529 0.88634 0.96333
0.92599 1.45898 1.36369 1.31094 1.22965 1.16836 0.80363 0.80353
0.85294 1.90849 1.68935 1.58177 1.22780 1.24864 1.06543 1.05197
1.00740 1.20638 0.92627 0.95494 0.99856 1.20075 1.02325 1.01797
0.92485 1.25034 1.04301 1.05971 0.96493 1.98389 1.65745 1.97640
1.36308 1.83358 1.25456 1.27087 1.11717 1.21396 0.95094 0.89018
0.94583 0.93468 0.90617 0.95425 0.92077 0.92355 0.91996 0.91173
0.90471 0.89731 0.76573 0.82001 0.82802 0.93720 0.92532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 39.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.23 11.00 55.49 0.61 -24.62 16
2 C 0.01 0.21 4.89 -17.43 -0.09 0.12 16
3 Si 0.90 20.94 29.58 -169.99 -5.03 15.91 16
4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
7 C -0.27 -6.94 9.46 -15.06 -0.14 -7.09 16
8 H 0.07 1.67 7.88 -52.49 -0.41 1.26 16
9 N -0.59 -13.93 2.23 -172.03 -0.38 -14.31 16
10 C 0.18 4.04 4.70 -3.20 -0.02 4.02 16
11 C -0.18 -3.21 5.78 -27.18 -0.16 -3.36 16
12 C 0.09 1.49 6.38 36.42 0.23 1.72 16
13 O -0.40 -6.73 9.38 -26.52 -0.25 -6.98 16
14 C 0.07 1.09 2.68 -25.78 -0.07 1.02 16
15 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
16 C 0.13 1.95 5.34 -4.04 -0.02 1.93 16
17 N -0.71 -9.48 5.49 -61.68 -0.34 -9.81 16
18 C 0.59 8.12 7.78 -12.95 -0.10 8.02 16
19 O -0.53 -8.93 16.84 5.17 0.09 -8.84 16
20 C -0.25 -2.80 6.45 -36.83 -0.24 -3.03 16
21 C -0.05 -0.51 10.01 -40.44 -0.40 -0.92 16
22 C -0.13 -1.10 10.08 -41.37 -0.42 -1.51 16
23 C -0.17 -1.50 6.82 29.25 0.20 -1.30 16
24 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16
25 S 0.26 2.32 22.15 -107.50 -2.38 -0.06 16
26 C 0.13 2.55 5.12 -3.83 -0.02 2.53 16
27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
28 H 0.08 1.91 6.37 -51.93 -0.33 1.58 16
29 H 0.03 0.69 8.04 -51.93 -0.42 0.28 16
30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
31 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16
32 H 0.06 1.17 7.40 -51.93 -0.38 0.79 16
33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16
35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
36 H 0.40 4.75 7.57 -40.82 -0.31 4.44 16
37 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16
38 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16
39 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16
40 H 0.06 1.12 7.98 -51.93 -0.41 0.71 16
LS Contribution 359.21 15.07 5.41 5.41
Total: -1.00 -29.64 359.21 -10.23 -39.86
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -5.20 Total: 2.90 kcal
Atomic # 6 Polarization: 3.38 SS G_CDS: -1.24 Total: 2.14 kcal
Atomic # 7 Polarization: -48.64 SS G_CDS: -0.11 Total: -48.75 kcal
Atomic # 8 Polarization: -15.66 SS G_CDS: -0.16 Total: -15.82 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal
Atomic # 16 Polarization: 2.32 SS G_CDS: -2.38 Total: -0.06 kcal
Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -29.64 -10.23 -39.86 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001073877219.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.964 kcal
(2) G-P(sol) polarization free energy of solvation -29.636 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds