Wall clock time and date at job start Sat Apr 11 2020 07:02:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86796 * 120.00108 * 2 1
4 4 H 1.48502 * 109.47248 * 240.00152 * 3 2 1
5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1
6 6 H 1.48507 * 109.47231 * 120.00060 * 3 2 1
7 7 C 1.38816 * 119.99990 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99661 * 195.46772 * 7 2 1
9 9 N 1.36938 * 119.99931 * 15.46924 * 7 2 1
10 10 C 1.47512 * 118.75822 * 26.09439 * 9 7 2
11 11 C 1.53562 * 111.02569 * 138.37451 * 10 9 7
12 12 C 1.51545 * 109.58407 * 320.02236 * 11 10 9
13 13 O 1.42156 * 108.76081 * 91.39806 * 12 11 10
14 14 C 1.38012 * 119.43876 * 272.77638 * 13 12 11
15 15 H 1.08994 * 109.46968 * 303.43073 * 14 13 12
16 16 C 1.52999 * 109.46958 * 183.42856 * 14 13 12
17 17 N 1.46503 * 109.46889 * 65.00285 * 16 14 13
18 18 C 1.34770 * 120.00092 * 179.97438 * 17 16 14
19 19 O 1.21719 * 120.00220 * 0.02562 * 18 17 16
20 20 C 1.46468 * 120.00215 * 180.02562 * 18 17 16
21 21 C 1.36693 * 125.44869 * 180.02562 * 20 18 17
22 22 C 1.37403 * 113.31584 * 179.97438 * 21 20 18
23 23 C 1.34013 * 115.07069 * 0.02562 * 22 21 20
24 24 Cl 1.73600 * 124.53010 * 179.97438 * 23 22 21
25 25 S 1.70617 * 110.93900 * 359.97438 * 23 22 21
26 26 C 1.45124 * 118.75563 * 206.09794 * 9 7 2
27 27 H 0.97002 * 119.99326 * 0.02562 * 1 2 3
28 28 H 1.08997 * 109.16250 * 17.97630 * 10 9 7
29 29 H 1.08994 * 109.12233 * 258.74752 * 10 9 7
30 30 H 1.09003 * 109.45686 * 199.98519 * 11 10 9
31 31 H 1.09004 * 109.45218 * 80.05342 * 11 10 9
32 32 H 1.08995 * 109.58608 * 331.61493 * 12 11 10
33 33 H 1.09000 * 109.58789 * 211.18553 * 12 11 10
34 34 H 1.08998 * 109.47444 * 305.00393 * 16 14 13
35 35 H 1.08998 * 109.46974 * 184.99935 * 16 14 13
36 36 H 0.97002 * 119.99713 * 359.97438 * 17 16 14
37 37 H 1.07998 * 123.34110 * 359.73077 * 21 20 18
38 38 H 1.07999 * 122.46631 * 179.97438 * 22 21 20
39 39 H 1.08992 * 109.45927 * 149.26850 * 26 9 7
40 40 H 1.08997 * 109.45933 * 29.30502 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1041 1.6964 1.2125
7 6 2.0103 -1.2022 -0.0005
8 1 3.0610 -1.2192 0.2489
9 7 1.3628 -2.3665 -0.3174
10 6 0.1711 -2.3025 -1.1844
11 6 0.1767 -3.4421 -2.2137
12 6 1.5843 -3.6476 -2.7362
13 8 2.2338 -4.6213 -1.9294
14 6 2.8927 -4.2231 -0.7839
15 1 3.6427 -3.4742 -1.0380
16 6 3.5762 -5.4322 -0.1422
17 7 4.6225 -5.9334 -1.0368
18 6 5.3625 -7.0007 -0.6769
19 8 5.1612 -7.5486 0.3911
20 6 6.4090 -7.5015 -1.5710
21 6 7.2217 -8.5713 -1.3194
22 6 8.1172 -8.8238 -2.3304
23 6 8.0428 -7.9893 -3.3764
24 17 9.0548 -8.0828 -4.7838
25 16 6.8204 -6.8227 -3.1399
26 6 1.8750 -3.6166 0.2126
27 1 -0.4849 0.8401 -0.0004
28 1 0.1608 -1.3469 -1.7085
29 1 -0.7240 -2.3819 -0.5674
30 1 -0.4842 -3.1865 -3.0419
31 1 -0.1726 -4.3600 -1.7409
32 1 2.1332 -2.7073 -2.6871
33 1 1.5438 -3.9961 -3.7681
34 1 2.8395 -6.2167 0.0306
35 1 4.0214 -5.1361 0.8076
36 1 4.7827 -5.4969 -1.8882
37 1 7.1680 -9.1575 -0.4139
38 1 8.8293 -9.6345 -2.2852
39 1 1.0502 -4.3140 0.3588
40 1 2.3675 -3.4317 1.1672
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001073877219.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:24
Heat of formation + Delta-G solvation = -44.588878 kcal
Electronic energy + Delta-G solvation = -25190.778216 eV
Core-core repulsion = 21351.389139 eV
Total energy + Delta-G solvation = -3839.389077 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.075 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.08981 -40.28470 -38.86116 -37.58985 -36.99593 -36.00233 -33.71711 -33.43141
-31.19480 -29.83221 -27.42176 -27.09096 -25.87189 -24.35444 -22.46923 -22.34316
-21.34209 -20.61248 -19.78327 -18.86182 -17.71324 -17.54734 -17.24291 -16.92641
-16.64786 -16.29378 -16.25529 -15.59545 -15.51218 -14.89125 -14.85127 -14.66333
-14.36521 -14.30212 -13.77917 -13.69248 -13.62245 -13.11990 -13.01985 -12.73978
-12.58443 -12.54144 -12.44673 -12.40956 -12.09579 -11.87975 -11.75927 -11.48845
-11.33096 -11.30633 -10.53185 -10.31704 -10.27370 -9.78480 -9.74273 -8.72770
-7.89220 -5.36550 -0.77393 -0.10032 0.58669 1.04217 1.18008 1.47056
1.48219 1.54994 1.98286 2.05663 2.49843 2.74615 3.26014 3.55589
3.67812 4.03144 4.05065 4.12722 4.21964 4.27027 4.35704 4.52441
4.57474 4.66338 4.74492 4.74718 4.81560 4.90810 4.93735 5.12525
5.14208 5.18844 5.22443 5.27805 5.47409 5.61652 5.75787 6.33063
6.36229 6.73323 6.99262 7.14440 7.86655 8.27718 9.16369
Molecular weight = 344.07amu
Principal moments of inertia in cm(-1)
A = 0.016160 B = 0.002428 C = 0.002354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1732.268942 B =11530.865922 C =11893.625720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.045 4.045
3 Si 0.964 3.036
4 H -0.276 1.276
5 H -0.296 1.296
6 H -0.277 1.277
7 C -0.270 4.270
8 H 0.069 0.931
9 N -0.606 5.606
10 C 0.185 3.815
11 C -0.164 4.164
12 C 0.091 3.909
13 O -0.393 6.393
14 C 0.084 3.916
15 H 0.046 0.954
16 C 0.142 3.858
17 N -0.709 5.709
18 C 0.589 3.411
19 O -0.566 6.566
20 C -0.282 4.282
21 C -0.045 4.045
22 C -0.132 4.132
23 C -0.173 4.173
24 Cl 0.000 7.000
25 S 0.280 5.720
26 C 0.124 3.876
27 H 0.250 0.750
28 H 0.046 0.954
29 H -0.007 1.007
30 H 0.084 0.916
31 H 0.061 0.939
32 H 0.041 0.959
33 H 0.109 0.891
34 H 0.074 0.926
35 H 0.086 0.914
36 H 0.408 0.592
37 H 0.167 0.833
38 H 0.178 0.822
39 H 0.044 0.956
40 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.675 -16.529 -10.515 25.089
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.241 4.241
3 Si 0.792 3.208
4 H -0.201 1.201
5 H -0.222 1.222
6 H -0.203 1.203
7 C -0.400 4.400
8 H 0.086 0.914
9 N -0.328 5.328
10 C 0.060 3.940
11 C -0.203 4.203
12 C 0.015 3.985
13 O -0.312 6.312
14 C 0.023 3.977
15 H 0.064 0.936
16 C 0.018 3.982
17 N -0.359 5.359
18 C 0.376 3.624
19 O -0.448 6.448
20 C -0.403 4.403
21 C -0.078 4.078
22 C -0.164 4.164
23 C -0.320 4.320
24 Cl 0.029 6.971
25 S 0.547 5.453
26 C -0.004 4.004
27 H 0.059 0.941
28 H 0.065 0.935
29 H 0.011 0.989
30 H 0.103 0.897
31 H 0.079 0.921
32 H 0.059 0.941
33 H 0.127 0.873
34 H 0.092 0.908
35 H 0.104 0.896
36 H 0.244 0.756
37 H 0.184 0.816
38 H 0.196 0.804
39 H 0.063 0.937
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 14.907 -15.707 -10.809 24.203
hybrid contribution 0.621 0.498 0.733 1.082
sum 15.529 -15.209 -10.076 23.958
Atomic orbital electron populations
1.70227 1.06615 1.25881 1.55293 1.25766 0.95987 1.01403 1.00924
0.85395 0.77589 0.79388 0.78387 1.20146 1.22240 1.20297 1.19480
0.92619 0.85889 1.42055 0.91373 1.44035 1.31546 1.02136 1.55054
1.20780 0.86984 0.96099 0.90143 1.22622 0.98759 0.99214 0.99701
1.22093 0.91332 0.91594 0.93496 1.86101 1.70572 1.37990 1.36502
1.22316 0.93797 0.94284 0.87349 0.93574 1.21304 0.88939 0.95268
0.92704 1.45770 1.35927 1.31165 1.23046 1.17122 0.80437 0.79753
0.85115 1.90823 1.70178 1.59273 1.24489 1.24634 1.07048 1.06706
1.01913 1.20833 0.92059 0.94705 1.00246 1.20254 1.02258 1.02235
0.91657 1.25208 1.04109 1.05764 0.96880 1.98399 1.65375 1.97573
1.35766 1.83239 1.25294 1.26724 1.10062 1.21552 0.95756 0.87775
0.95349 0.94117 0.93529 0.98873 0.89711 0.92068 0.94072 0.87312
0.90801 0.89551 0.75625 0.81563 0.80442 0.93734 0.92888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.91 11.00 21.65 0.24 -53.67 16
2 C -0.05 -2.44 4.89 84.86 0.41 -2.02 16
3 Si 0.96 43.52 29.58 68.60 2.03 45.55 16
4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16
6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16
7 C -0.27 -14.18 9.46 84.03 0.80 -13.39 16
8 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16
9 N -0.61 -28.96 2.23 -698.17 -1.55 -30.52 16
10 C 0.18 8.64 4.70 86.37 0.41 9.05 16
11 C -0.16 -5.77 5.78 30.31 0.18 -5.59 16
12 C 0.09 2.88 6.38 71.51 0.46 3.34 16
13 O -0.39 -12.58 9.38 -117.82 -1.11 -13.68 16
14 C 0.08 2.75 2.68 31.21 0.08 2.84 16
15 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
16 C 0.14 4.05 5.34 86.38 0.46 4.51 16
17 N -0.71 -17.98 5.49 -467.28 -2.56 -20.55 16
18 C 0.59 15.78 7.78 86.39 0.67 16.45 16
19 O -0.57 -18.96 16.84 -4.41 -0.07 -19.03 16
20 C -0.28 -5.84 6.45 24.05 0.16 -5.69 16
21 C -0.04 -0.78 10.01 21.71 0.22 -0.56 16
22 C -0.13 -1.82 10.08 21.11 0.21 -1.60 16
23 C -0.17 -2.58 6.82 66.86 0.46 -2.13 16
24 Cl 0.00 0.00 29.27 -2.72 -0.08 -0.08 16
25 S 0.28 4.46 22.15 -56.49 -1.25 3.21 16
26 C 0.12 4.92 5.12 87.25 0.45 5.37 16
27 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16
28 H 0.05 2.43 6.37 -2.39 -0.02 2.41 16
29 H -0.01 -0.36 8.04 -2.39 -0.02 -0.38 16
30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
31 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16
32 H 0.04 1.50 7.40 -2.39 -0.02 1.49 16
33 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16
34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16
35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16
36 H 0.41 9.00 7.57 -92.71 -0.70 8.30 16
37 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16
38 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16
39 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16
40 H 0.05 2.12 7.98 -2.39 -0.02 2.10 16
Total: -1.00 -64.63 359.21 0.96 -63.66
By element:
Atomic # 1 Polarization: 14.16 SS G_CDS: 0.37 Total: 14.53 kcal
Atomic # 6 Polarization: 5.62 SS G_CDS: 4.95 Total: 10.57 kcal
Atomic # 7 Polarization: -100.86 SS G_CDS: -3.88 Total: -104.74 kcal
Atomic # 8 Polarization: -31.53 SS G_CDS: -1.18 Total: -32.71 kcal
Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal
Atomic # 16 Polarization: 4.46 SS G_CDS: -1.25 Total: 3.21 kcal
Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal
Total: -64.63 0.96 -63.66 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001073877219.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.074 kcal
(2) G-P(sol) polarization free energy of solvation -64.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds