Wall clock time and date at job start Sat Apr 11 2020 07:06:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45205 * 1
3 3 C 1.34788 * 116.99557 * 2 1
4 4 O 1.21546 * 120.00391 * 0.02562 * 3 2 1
5 5 C 1.47114 * 119.99448 * 180.02562 * 3 2 1
6 6 C 1.46752 * 127.01943 * 180.23215 * 5 3 2
7 7 C 1.34425 * 106.36880 * 180.13066 * 6 5 3
8 8 S 1.76204 * 125.45448 * 179.91880 * 7 6 5
9 9 O 1.42100 * 106.40543 * 156.15226 * 8 7 6
10 10 O 1.42101 * 106.40118 * 23.23087 * 8 7 6
11 11 N 1.65608 * 107.21795 * 269.69194 * 8 7 6
12 12 C 1.47585 * 134.48972 * 89.99922 * 11 8 7
13 13 C 1.53946 * 86.11303 * 155.35854 * 12 11 8
14 14 O 1.42897 * 113.74194 * 269.15036 * 13 12 11
15 15 C 1.50705 * 113.74193 * 137.95267 * 13 12 11
16 16 H 1.08000 * 119.99753 * 17.18899 * 15 13 12
17 17 C 1.37873 * 119.99893 * 197.19270 * 15 13 12
18 18 N 1.31513 * 119.99896 * 194.35422 * 17 15 13
19 19 Si 1.86797 * 120.00211 * 14.35029 * 17 15 13
20 20 H 1.48498 * 109.46923 * 180.02562 * 19 17 15
21 21 H 1.48497 * 109.47361 * 300.00177 * 19 17 15
22 22 H 1.48501 * 109.47273 * 60.00378 * 19 17 15
23 23 C 1.47807 * 134.45879 * 269.86725 * 11 8 7
24 24 N 1.36420 * 109.08968 * 359.65231 * 7 6 5
25 25 C 1.46510 * 124.81226 * 180.24624 * 24 7 6
26 26 C 1.34627 * 110.38269 * 0.22917 * 24 7 6
27 27 H 1.08999 * 109.47492 * 59.99788 * 1 2 3
28 28 H 1.09003 * 109.46535 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47036 * 299.99368 * 1 2 3
30 30 H 1.07997 * 126.80837 * 0.02562 * 6 5 3
31 31 H 1.08992 * 113.77064 * 41.05655 * 12 11 8
32 32 H 1.09002 * 113.86851 * 269.67158 * 12 11 8
33 33 H 0.96694 * 114.00247 * 174.14979 * 14 13 12
34 34 H 0.97009 * 119.99986 * 354.85954 * 18 17 15
35 35 H 1.08994 * 113.77033 * 90.37447 * 23 11 8
36 36 H 1.09004 * 113.83092 * 318.91797 * 23 11 8
37 37 H 1.09002 * 109.46497 * 89.99904 * 25 24 7
38 38 H 1.08997 * 109.47271 * 210.00183 * 25 24 7
39 39 H 1.08997 * 109.47051 * 330.00537 * 25 24 7
40 40 H 1.08005 * 125.89928 * 180.02562 * 26 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0639 1.2010 0.0000
4 8 1.4019 2.2204 0.0005
5 6 3.5330 1.2780 -0.0006
6 6 4.3541 2.4943 0.0041
7 6 5.6350 2.0867 -0.0014
8 16 7.0442 3.1445 -0.0011
9 8 8.1153 2.3861 0.5438
10 8 6.6147 4.3850 0.5431
11 7 7.4367 3.4386 -1.5829
12 6 7.0498 4.4643 -2.5710
13 6 8.3897 4.1535 -3.2624
14 8 9.4728 4.9688 -2.8109
15 6 8.2949 4.0818 -4.7648
16 1 7.4410 4.5050 -5.2728
17 6 9.2983 3.4758 -5.4907
18 7 9.3678 3.6536 -6.7919
19 14 10.5591 2.4025 -4.6259
20 1 11.5245 1.8726 -5.6221
21 1 11.2861 3.2103 -3.6139
22 1 9.8694 1.2719 -3.9543
23 6 8.3173 2.7802 -2.5706
24 7 5.6693 0.7229 -0.0012
25 6 6.8928 -0.0830 -0.0011
26 6 4.4195 0.2225 -0.0006
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3632 -1.0277 -0.0005
29 1 -0.3633 0.5137 0.8900
30 1 3.9994 3.5144 0.0090
31 1 6.9914 5.4716 -2.1588
32 1 6.1762 4.1967 -3.1654
33 1 10.3325 4.7184 -3.1760
34 1 8.6719 4.1488 -7.2516
35 1 7.8169 2.0151 -3.1641
36 1 9.2691 2.4454 -2.1580
37 1 7.1962 -0.2826 1.0266
38 1 6.7067 -1.0261 -0.5148
39 1 7.6858 0.4603 -0.5149
40 1 4.1568 -0.8251 0.0000
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001434570207.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:05
Heat of formation + Delta-G solvation = -105.538085 kcal
Electronic energy + Delta-G solvation = -28632.809927 eV
Core-core repulsion = 24350.068729 eV
Total energy + Delta-G solvation = -4282.741198 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.097 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.56286 -40.05713 -38.96908 -37.13474 -36.45348 -35.73472 -34.27929 -33.13706
-32.65801 -30.23792 -28.15335 -28.04735 -26.78553 -25.87716 -24.25212 -23.36721
-21.53103 -20.39128 -19.81779 -18.96638 -18.08663 -18.01709 -17.18683 -17.16716
-16.48380 -16.10852 -15.81946 -15.68779 -15.57689 -15.37889 -14.52626 -14.10817
-13.81981 -13.69013 -13.62113 -13.48003 -13.31358 -12.93892 -12.80527 -12.66278
-12.59678 -12.22841 -12.16344 -11.98791 -11.83736 -11.77185 -11.33260 -11.16618
-10.97895 -10.80312 -10.70687 -10.43556 -9.88408 -9.50100 -9.19361 -9.10379
-9.00052 -8.81862 -8.27616 -6.76513 -4.50303 0.41911 1.22604 1.52814
2.26770 2.71963 3.01442 3.06681 3.12715 3.13699 3.34002 3.86868
4.14456 4.20622 4.45728 4.54239 4.79966 4.83335 4.88235 4.93620
4.96093 4.98172 4.99739 5.20445 5.31802 5.39595 5.46262 5.49802
5.67448 5.91947 5.97150 6.14369 6.20401 6.23543 6.33130 6.48008
6.55702 6.66713 7.09633 7.52146 7.70166 8.04879 8.53753 8.69499
9.24666 10.59566
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.014587 B = 0.003496 C = 0.003317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.120804 B = 8007.983693 C = 8438.199531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.361 6.361
3 C 0.542 3.458
4 O -0.513 6.513
5 C -0.244 4.244
6 C -0.011 4.011
7 C -0.563 4.563
8 S 2.714 3.286
9 O -0.958 6.958
10 O -0.944 6.944
11 N -1.020 6.020
12 C 0.147 3.853
13 C 0.208 3.792
14 O -0.565 6.565
15 C -0.615 4.615
16 H 0.072 0.928
17 C 0.036 3.964
18 N -0.886 5.886
19 Si 1.036 2.964
20 H -0.278 1.278
21 H -0.277 1.277
22 H -0.273 1.273
23 C 0.080 3.920
24 N -0.385 5.385
25 C 0.050 3.950
26 C 0.117 3.883
27 H 0.063 0.937
28 H 0.100 0.900
29 H 0.062 0.938
30 H 0.167 0.833
31 H 0.081 0.919
32 H 0.092 0.908
33 H 0.368 0.632
34 H 0.274 0.726
35 H 0.092 0.908
36 H 0.071 0.929
37 H 0.093 0.907
38 H 0.096 0.904
39 H 0.101 0.899
40 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.357 -11.675 11.929 19.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.279 6.279
3 C 0.388 3.612
4 O -0.402 6.402
5 C -0.253 4.253
6 C -0.037 4.037
7 C -0.750 4.750
8 S 2.802 3.198
9 O -0.949 6.949
10 O -0.934 6.934
11 N -0.861 5.861
12 C 0.023 3.977
13 C 0.165 3.835
14 O -0.373 6.373
15 C -0.654 4.654
16 H 0.090 0.910
17 C -0.172 4.172
18 N -0.518 5.518
19 Si 0.864 3.136
20 H -0.203 1.203
21 H -0.204 1.204
22 H -0.199 1.199
23 C -0.045 4.045
24 N -0.055 5.055
25 C -0.091 4.091
26 C -0.027 4.027
27 H 0.082 0.918
28 H 0.119 0.881
29 H 0.081 0.919
30 H 0.185 0.815
31 H 0.100 0.900
32 H 0.110 0.890
33 H 0.218 0.782
34 H 0.085 0.915
35 H 0.110 0.890
36 H 0.090 0.910
37 H 0.111 0.889
38 H 0.115 0.885
39 H 0.120 0.880
40 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -7.999 -11.875 12.995 19.336
hybrid contribution -2.037 0.009 -0.303 2.059
sum -10.035 -11.866 12.692 20.065
Atomic orbital electron populations
1.23238 0.76128 1.03503 1.02661 1.86534 1.23437 1.32917 1.84964
1.20026 0.87542 0.81242 0.72379 1.90850 1.66502 1.35955 1.46855
1.19803 0.88978 0.93953 1.22537 1.21952 0.89171 0.98430 0.94133
1.33415 1.19617 0.95145 1.26862 1.01597 0.72392 0.73162 0.72625
1.93531 1.51871 1.72812 1.76654 1.93589 1.83071 1.40346 1.76394
1.60320 1.57752 1.41024 1.26989 1.22929 0.98331 0.90681 0.85799
1.20379 0.85125 0.85195 0.92835 1.86365 1.18492 1.59244 1.73200
1.22247 1.10922 1.42858 0.89394 0.91036 1.25820 0.98832 0.96370
0.96212 1.70808 1.32958 1.38769 1.09311 0.84198 0.76594 0.77234
0.75568 1.20324 1.20352 1.19919 1.24354 0.92240 1.00672 0.87245
1.43233 1.06911 1.04313 1.51092 1.22617 0.84638 0.96330 1.05474
1.22741 0.82905 0.99444 0.97651 0.91832 0.88149 0.91921 0.81526
0.90029 0.88989 0.78239 0.91493 0.89015 0.91049 0.88879 0.88549
0.88000 0.79308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.31 10.57 101.05 1.07 1.37 16
2 O -0.36 -4.01 10.42 -40.73 -0.42 -4.43 16
3 C 0.54 7.53 7.95 34.33 0.27 7.80 16
4 O -0.51 -8.47 16.77 -19.30 -0.32 -8.80 16
5 C -0.24 -3.33 6.32 -103.01 -0.65 -3.99 16
6 C -0.01 -0.16 10.66 -37.49 -0.40 -0.56 16
7 C -0.56 -8.38 6.92 -16.86 -0.12 -8.49 16
8 S 2.71 46.40 6.13 -107.50 -0.66 45.74 16
9 O -0.96 -16.95 15.56 -57.17 -0.89 -17.84 16
10 O -0.94 -18.35 17.79 -57.17 -1.02 -19.37 16
11 N -1.02 -18.55 4.12 -118.53 -0.49 -19.04 16
12 C 0.15 2.82 8.37 -2.96 -0.02 2.79 16
13 C 0.21 4.52 1.07 -90.85 -0.10 4.43 16
14 O -0.56 -12.59 13.47 -35.23 -0.47 -13.07 16
15 C -0.62 -15.24 9.04 -34.44 -0.31 -15.56 16
16 H 0.07 1.90 8.06 -52.49 -0.42 1.48 16
17 C 0.04 0.91 5.44 -17.82 -0.10 0.81 16
18 N -0.89 -24.40 13.70 55.43 0.76 -23.64 16
19 Si 1.04 21.39 24.55 -169.99 -4.17 17.22 16
20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16
21 H -0.28 -5.19 5.81 56.52 0.33 -4.86 16
22 H -0.27 -5.04 6.48 56.52 0.37 -4.68 16
23 C 0.08 1.53 5.75 -2.84 -0.02 1.51 16
24 N -0.38 -4.70 3.08 -123.26 -0.38 -5.08 16
25 C 0.05 0.47 10.04 59.85 0.60 1.07 16
26 C 0.12 1.27 11.22 -16.47 -0.18 1.08 16
27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.17 2.44 8.06 -52.49 -0.42 2.01 16
31 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16
32 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16
33 H 0.37 7.59 6.07 45.56 0.28 7.87 16
34 H 0.27 7.56 8.73 -40.82 -0.36 7.20 16
35 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16
36 H 0.07 1.29 6.87 -51.93 -0.36 0.93 16
37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
38 H 0.10 0.57 8.13 -51.93 -0.42 0.15 16
39 H 0.10 1.13 6.51 -51.93 -0.34 0.79 16
40 H 0.19 1.27 8.06 -52.48 -0.42 0.85 16
LS Contribution 355.54 15.07 5.36 5.36
Total: -1.00 -33.37 355.54 -6.99 -40.35
By element:
Atomic # 1 Polarization: 14.64 SS G_CDS: -4.32 Total: 10.33 kcal
Atomic # 6 Polarization: -7.77 SS G_CDS: 0.04 Total: -7.72 kcal
Atomic # 7 Polarization: -47.65 SS G_CDS: -0.11 Total: -47.76 kcal
Atomic # 8 Polarization: -60.38 SS G_CDS: -3.13 Total: -63.51 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -4.17 Total: 17.22 kcal
Atomic # 16 Polarization: 46.40 SS G_CDS: -0.66 Total: 45.74 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -33.37 -6.99 -40.35 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434570207.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.185 kcal
(2) G-P(sol) polarization free energy of solvation -33.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.550 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds