Wall clock time and date at job start Sat Apr 11 2020 07:02:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46500 * 109.47007 * 240.00089 * 2 1 3
5 5 C 1.34777 * 120.00075 * 84.99755 * 4 2 1
6 6 O 1.21287 * 119.99865 * 0.02562 * 5 4 2
7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2
8 8 S 1.81001 * 109.47021 * 180.02562 * 7 5 4
9 9 C 1.76199 * 99.99692 * 179.97438 * 8 7 5
10 10 H 1.07998 * 120.00491 * 0.02562 * 9 8 7
11 11 C 1.38803 * 119.99834 * 179.97438 * 9 8 7
12 12 N 1.31625 * 120.00150 * 0.02562 * 11 9 8
13 13 Si 1.86801 * 120.00062 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.46773 * 90.00216 * 13 11 9
15 15 H 1.48502 * 109.47309 * 210.00185 * 13 11 9
16 16 H 1.48500 * 109.47082 * 330.00616 * 13 11 9
17 17 C 1.53000 * 109.47060 * 120.00319 * 2 1 3
18 18 H 1.09002 * 109.46642 * 185.00070 * 17 2 1
19 19 C 1.52993 * 109.47345 * 65.00157 * 17 2 1
20 20 N 1.46504 * 109.47054 * 304.99656 * 17 2 1
21 21 C 1.34779 * 120.00082 * 205.00252 * 20 17 2
22 22 O 1.21623 * 119.99777 * 0.02562 * 21 20 17
23 23 C 1.47169 * 120.00163 * 180.02562 * 21 20 17
24 24 C 1.38239 * 128.47869 * 179.70295 * 23 21 20
25 25 N 1.31241 * 111.89113 * 179.84697 * 24 23 21
26 26 N 1.27336 * 120.03561 * 0.48935 * 25 24 23
27 27 S 1.56639 * 109.74174 * 359.71881 * 26 25 24
28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3
30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3
31 31 H 0.96997 * 120.00274 * 264.99726 * 4 2 1
32 32 H 1.08999 * 109.47169 * 300.00043 * 7 5 4
33 33 H 1.08999 * 109.47104 * 60.00393 * 7 5 4
34 34 H 0.96996 * 120.00313 * 180.02562 * 12 11 9
35 35 H 1.08993 * 109.47639 * 59.99724 * 19 17 2
36 36 H 1.09004 * 109.47135 * 179.97438 * 19 17 2
37 37 H 1.09002 * 109.47179 * 299.99584 * 19 17 2
38 38 H 0.97001 * 119.99798 * 25.00179 * 20 17 2
39 39 H 1.08002 * 124.05257 * 359.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1469 -0.0183 -2.3572
6 8 1.8589 1.1587 -2.4115
7 6 2.6498 -0.7285 -3.5875
8 16 2.7112 0.4348 -4.9729
9 6 3.3156 -0.6301 -6.2399
10 1 3.5248 -1.6666 -6.0200
11 6 3.5218 -0.1372 -7.5209
12 7 3.2664 1.1259 -7.7891
13 14 4.1633 -1.2659 -8.8640
14 1 3.0188 -1.9046 -9.5623
15 1 4.9582 -0.4750 -9.8376
16 1 5.0227 -2.3155 -8.2599
17 6 2.0400 -0.7213 1.2492
18 1 3.1263 -0.6444 1.2951
19 6 1.6353 -2.1955 1.1879
20 7 1.4558 -0.1037 2.4424
21 6 2.0913 -0.1938 3.6276
22 8 3.1498 -0.7875 3.7064
23 6 1.5042 0.4261 4.8263
24 6 1.9968 0.4369 6.1179
25 7 1.2074 1.0912 6.9372
26 7 0.1296 1.6125 6.5034
27 16 -0.0117 1.3352 4.9682
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5137 0.8900
30 1 -0.3635 0.5138 -0.8899
31 1 2.2490 -1.6317 -1.1527
32 1 3.6491 -1.1202 -3.3980
33 1 1.9776 -1.5508 -3.8326
34 1 3.4101 1.4703 -8.6844
35 1 2.0698 -2.6550 0.3002
36 1 1.9990 -2.7094 2.0777
37 1 0.5489 -2.2724 1.1420
38 1 0.6118 0.3701 2.3794
39 1 2.9214 -0.0347 6.4166
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734697281.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:37
Heat of formation + Delta-G solvation = 2.895425 kcal
Electronic energy + Delta-G solvation = -24142.671307 eV
Core-core repulsion = 20339.677761 eV
Total energy + Delta-G solvation = -3802.993546 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.076 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.41196 -40.52281 -39.38303 -37.15387 -34.31770 -32.79027 -32.46368 -31.44314
-29.97167 -28.59845 -28.01350 -25.54875 -25.22511 -23.60747 -21.41827 -20.89326
-20.08717 -19.86791 -18.38209 -17.77740 -16.77077 -16.52135 -16.42271 -16.06723
-15.47095 -15.20711 -15.07293 -14.83451 -14.74344 -14.67927 -14.02857 -13.48427
-13.28674 -13.27832 -13.00251 -12.62998 -12.58515 -12.53223 -12.17723 -12.01188
-11.38913 -11.23322 -11.09298 -11.05757 -10.92360 -10.79576 -10.68654 -10.67143
-10.43615 -9.86287 -9.75503 -9.50991 -9.12698 -9.06757 -8.28755 -6.54391
-6.25242 -3.96160 -0.85764 0.21103 0.89333 1.40697 2.23759 2.39834
2.97311 3.00009 3.19980 3.25587 3.29313 3.44547 3.63965 4.01888
4.11236 4.16934 4.24247 4.49116 4.74121 4.98210 5.01349 5.04241
5.07042 5.10230 5.26192 5.34433 5.47881 5.56420 5.66750 5.77608
5.82371 5.84707 6.05775 6.08390 6.47689 6.70573 7.06219 7.42871
7.55137 7.57027 8.31686 8.49133 9.20307 10.82140
Molecular weight = 344.08amu
Principal moments of inertia in cm(-1)
A = 0.033259 B = 0.001782 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.686800 B =15705.878153 C =16059.305617
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.137 3.863
3 H 0.096 0.904
4 N -0.732 5.732
5 C 0.535 3.465
6 O -0.514 6.514
7 C -0.154 4.154
8 S -0.059 6.059
9 C -0.536 4.536
10 H 0.073 0.927
11 C 0.074 3.926
12 N -0.867 5.867
13 Si 0.919 3.081
14 H -0.277 1.277
15 H -0.282 1.282
16 H -0.272 1.272
17 C 0.136 3.864
18 H 0.102 0.898
19 C -0.169 4.169
20 N -0.713 5.713
21 C 0.605 3.395
22 O -0.510 6.510
23 C -0.289 4.289
24 C 0.078 3.922
25 N -0.251 5.251
26 N -0.252 5.252
27 S 0.425 5.575
28 H 0.065 0.935
29 H 0.058 0.942
30 H 0.074 0.926
31 H 0.399 0.601
32 H 0.091 0.909
33 H 0.090 0.910
34 H 0.269 0.731
35 H 0.072 0.928
36 H 0.067 0.933
37 H 0.067 0.933
38 H 0.401 0.599
39 H 0.217 0.783
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.243 -5.029 25.686 27.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.031 3.969
3 H 0.114 0.886
4 N -0.389 5.389
5 C 0.321 3.679
6 O -0.388 6.388
7 C -0.305 4.305
8 S 0.167 5.833
9 C -0.684 4.684
10 H 0.091 0.909
11 C -0.136 4.136
12 N -0.503 5.503
13 Si 0.745 3.255
14 H -0.203 1.203
15 H -0.207 1.207
16 H -0.197 1.197
17 C 0.032 3.968
18 H 0.120 0.880
19 C -0.228 4.228
20 N -0.367 5.367
21 C 0.388 3.612
22 O -0.386 6.386
23 C -0.431 4.431
24 C -0.089 4.089
25 N -0.115 5.115
26 N -0.233 5.233
27 S 0.559 5.441
28 H 0.084 0.916
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.235 0.765
32 H 0.109 0.891
33 H 0.109 0.891
34 H 0.078 0.922
35 H 0.091 0.909
36 H 0.086 0.914
37 H 0.085 0.915
38 H 0.238 0.762
39 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges -8.492 -2.291 26.131 27.571
hybrid contribution 1.688 -3.064 -0.967 3.630
sum -6.804 -5.355 25.163 26.611
Atomic orbital electron populations
1.22297 0.95123 1.02722 1.02729 1.20963 0.94520 0.97866 0.83588
0.88556 1.46069 1.69726 1.14048 1.09021 1.20345 0.76643 0.87209
0.83657 1.90708 1.48041 1.15680 1.84331 1.23538 1.03762 1.04939
0.98243 1.85395 1.86290 1.12820 0.98757 1.22863 1.51052 0.98167
0.96361 0.90892 1.24993 0.95070 0.95538 0.97974 1.70009 1.45523
1.13198 1.21522 0.86166 0.78844 0.79952 0.80529 1.20270 1.20740
1.19681 1.21242 0.99890 0.92847 0.82846 0.87976 1.22268 1.02506
0.94898 1.03095 1.45952 1.25853 1.57059 1.07787 1.16433 0.84065
0.79543 0.81181 1.90885 1.21160 1.41806 1.84713 1.28042 1.03244
1.11665 1.00100 1.24520 1.01207 0.96438 0.86757 1.70725 0.99181
1.10103 1.31468 1.78924 1.15601 1.20757 1.08042 1.82664 1.15769
1.34457 1.11168 0.91626 0.92366 0.90695 0.76483 0.89098 0.89121
0.92155 0.90933 0.91442 0.91450 0.76242 0.76620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.35 9.00 37.16 0.33 -1.01 16
2 C 0.14 1.27 2.62 -67.93 -0.18 1.10 16
3 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16
4 N -0.73 -8.25 4.99 -53.81 -0.27 -8.52 16
5 C 0.54 9.01 7.81 -10.99 -0.09 8.93 16
6 O -0.51 -10.66 15.52 5.55 0.09 -10.58 16
7 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16
8 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16
9 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16
10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16
11 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16
12 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16
13 Si 0.92 21.02 29.55 -169.99 -5.02 15.99 16
14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
17 C 0.14 1.03 2.62 -67.93 -0.18 0.85 16
18 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16
19 C -0.17 -1.08 9.00 37.15 0.33 -0.74 16
20 N -0.71 -4.59 4.99 -54.96 -0.27 -4.87 16
21 C 0.60 4.90 7.77 -12.63 -0.10 4.80 16
22 O -0.51 -5.77 16.64 5.26 0.09 -5.68 16
23 C -0.29 -1.94 6.81 -35.96 -0.25 -2.19 16
24 C 0.08 0.54 11.55 -17.80 -0.21 0.34 16
25 N -0.25 -2.20 11.54 30.36 0.35 -1.85 16
26 N -0.25 -2.11 12.51 60.35 0.75 -1.36 16
27 S 0.42 2.22 23.05 -107.50 -2.48 -0.25 16
28 H 0.06 0.45 6.56 -51.93 -0.34 0.10 16
29 H 0.06 0.30 6.29 -51.93 -0.33 -0.03 16
30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
31 H 0.40 3.45 6.58 -40.82 -0.27 3.18 16
32 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16
33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16
34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
35 H 0.07 0.41 6.29 -51.93 -0.33 0.08 16
36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
37 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16
38 H 0.40 1.75 6.00 -40.82 -0.25 1.51 16
39 H 0.22 1.06 8.06 -52.49 -0.42 0.64 16
LS Contribution 362.42 15.07 5.46 5.46
Total: -1.00 -35.98 362.42 -6.98 -42.96
By element:
Atomic # 1 Polarization: 4.95 SS G_CDS: -4.29 Total: 0.66 kcal
Atomic # 6 Polarization: -3.35 SS G_CDS: 0.10 Total: -3.25 kcal
Atomic # 7 Polarization: -42.84 SS G_CDS: 1.30 Total: -41.55 kcal
Atomic # 8 Polarization: -16.44 SS G_CDS: 0.17 Total: -16.26 kcal
Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal
Atomic # 16 Polarization: 0.67 SS G_CDS: -4.69 Total: -4.02 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -35.98 -6.98 -42.96 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734697281.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.856 kcal
(2) G-P(sol) polarization free energy of solvation -35.985 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.872 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds