Wall clock time and date at job start Sat Apr 11 2020 07:02:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46500 * 109.47007 * 240.00089 * 2 1 3
5 5 C 1.34777 * 120.00075 * 84.99755 * 4 2 1
6 6 O 1.21287 * 119.99865 * 0.02562 * 5 4 2
7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2
8 8 S 1.81001 * 109.47021 * 180.02562 * 7 5 4
9 9 C 1.76199 * 99.99692 * 179.97438 * 8 7 5
10 10 H 1.07998 * 120.00491 * 0.02562 * 9 8 7
11 11 C 1.38803 * 119.99834 * 179.97438 * 9 8 7
12 12 N 1.31625 * 120.00150 * 0.02562 * 11 9 8
13 13 Si 1.86801 * 120.00062 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.46773 * 90.00216 * 13 11 9
15 15 H 1.48502 * 109.47309 * 210.00185 * 13 11 9
16 16 H 1.48500 * 109.47082 * 330.00616 * 13 11 9
17 17 C 1.53000 * 109.47060 * 120.00319 * 2 1 3
18 18 H 1.09002 * 109.46642 * 185.00070 * 17 2 1
19 19 C 1.52993 * 109.47345 * 65.00157 * 17 2 1
20 20 N 1.46504 * 109.47054 * 304.99656 * 17 2 1
21 21 C 1.34779 * 120.00082 * 205.00252 * 20 17 2
22 22 O 1.21623 * 119.99777 * 0.02562 * 21 20 17
23 23 C 1.47169 * 120.00163 * 180.02562 * 21 20 17
24 24 C 1.38239 * 128.47869 * 179.70295 * 23 21 20
25 25 N 1.31241 * 111.89113 * 179.84697 * 24 23 21
26 26 N 1.27336 * 120.03561 * 0.48935 * 25 24 23
27 27 S 1.56639 * 109.74174 * 359.71881 * 26 25 24
28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3
30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3
31 31 H 0.96997 * 120.00274 * 264.99726 * 4 2 1
32 32 H 1.08999 * 109.47169 * 300.00043 * 7 5 4
33 33 H 1.08999 * 109.47104 * 60.00393 * 7 5 4
34 34 H 0.96996 * 120.00313 * 180.02562 * 12 11 9
35 35 H 1.08993 * 109.47639 * 59.99724 * 19 17 2
36 36 H 1.09004 * 109.47135 * 179.97438 * 19 17 2
37 37 H 1.09002 * 109.47179 * 299.99584 * 19 17 2
38 38 H 0.97001 * 119.99798 * 25.00179 * 20 17 2
39 39 H 1.08002 * 124.05257 * 359.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1469 -0.0183 -2.3572
6 8 1.8589 1.1587 -2.4115
7 6 2.6498 -0.7285 -3.5875
8 16 2.7112 0.4348 -4.9729
9 6 3.3156 -0.6301 -6.2399
10 1 3.5248 -1.6666 -6.0200
11 6 3.5218 -0.1372 -7.5209
12 7 3.2664 1.1259 -7.7891
13 14 4.1633 -1.2659 -8.8640
14 1 3.0188 -1.9046 -9.5623
15 1 4.9582 -0.4750 -9.8376
16 1 5.0227 -2.3155 -8.2599
17 6 2.0400 -0.7213 1.2492
18 1 3.1263 -0.6444 1.2951
19 6 1.6353 -2.1955 1.1879
20 7 1.4558 -0.1037 2.4424
21 6 2.0913 -0.1938 3.6276
22 8 3.1498 -0.7875 3.7064
23 6 1.5042 0.4261 4.8263
24 6 1.9968 0.4369 6.1179
25 7 1.2074 1.0912 6.9372
26 7 0.1296 1.6125 6.5034
27 16 -0.0117 1.3352 4.9682
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5137 0.8900
30 1 -0.3635 0.5138 -0.8899
31 1 2.2490 -1.6317 -1.1527
32 1 3.6491 -1.1202 -3.3980
33 1 1.9776 -1.5508 -3.8326
34 1 3.4101 1.4703 -8.6844
35 1 2.0698 -2.6550 0.3002
36 1 1.9990 -2.7094 2.0777
37 1 0.5489 -2.2724 1.1420
38 1 0.6118 0.3701 2.3794
39 1 2.9214 -0.0347 6.4166
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734697281.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:37
Heat of formation + Delta-G solvation = -25.182136 kcal
Electronic energy + Delta-G solvation = -24143.888841 eV
Core-core repulsion = 20339.677761 eV
Total energy + Delta-G solvation = -3804.211080 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 344.076 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.98041 -41.30676 -40.46422 -38.07533 -35.24366 -34.56833 -33.43011 -32.39882
-30.75814 -29.75871 -28.59238 -27.64239 -25.89517 -24.28808 -22.24069 -21.74508
-20.99423 -20.39163 -19.90222 -18.83135 -17.93129 -17.31019 -17.14203 -16.95248
-16.86222 -16.45911 -16.08627 -15.93433 -15.67884 -15.47518 -15.37598 -14.74558
-14.47235 -14.16508 -13.86037 -13.70883 -13.36676 -13.21124 -13.14529 -13.02291
-12.88160 -12.81897 -12.58579 -12.11321 -11.95639 -11.71257 -11.55065 -11.26718
-11.21490 -11.12902 -10.95823 -10.93978 -10.37494 -10.25197 -10.16983 -8.64051
-8.33434 -6.10609 -1.39753 -0.27852 0.38356 0.84501 1.26209 1.43303
1.44994 1.54830 1.62273 1.72737 1.79047 2.28136 2.37651 2.92917
3.00932 3.33350 3.40919 3.54731 3.64097 3.81029 3.98036 4.08963
4.33033 4.37635 4.45352 4.54988 4.55821 4.66771 4.69845 4.92016
4.96785 5.17747 5.20055 5.42703 5.43767 5.47224 6.14318 6.21300
6.48638 6.53599 6.83684 7.08393 7.25031 8.75541
Molecular weight = 344.08amu
Principal moments of inertia in cm(-1)
A = 0.033259 B = 0.001782 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.686800 B =15705.878153 C =16059.305617
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.137 3.863
3 H 0.076 0.924
4 N -0.707 5.707
5 C 0.539 3.461
6 O -0.560 6.560
7 C -0.132 4.132
8 S -0.149 6.149
9 C -0.546 4.546
10 H 0.083 0.917
11 C 0.013 3.987
12 N -0.911 5.911
13 Si 0.997 3.003
14 H -0.268 1.268
15 H -0.279 1.279
16 H -0.258 1.258
17 C 0.146 3.854
18 H 0.087 0.913
19 C -0.167 4.167
20 N -0.702 5.702
21 C 0.610 3.390
22 O -0.545 6.545
23 C -0.303 4.303
24 C 0.078 3.922
25 N -0.278 5.278
26 N -0.288 5.288
27 S 0.505 5.495
28 H 0.084 0.916
29 H 0.089 0.911
30 H 0.045 0.955
31 H 0.416 0.584
32 H 0.109 0.891
33 H 0.112 0.888
34 H 0.271 0.729
35 H 0.081 0.919
36 H 0.061 0.939
37 H 0.082 0.918
38 H 0.412 0.588
39 H 0.230 0.770
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.875 -7.174 26.312 28.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.032 3.968
3 H 0.094 0.906
4 N -0.363 5.363
5 C 0.325 3.675
6 O -0.437 6.437
7 C -0.283 4.283
8 S 0.078 5.922
9 C -0.694 4.694
10 H 0.101 0.899
11 C -0.192 4.192
12 N -0.547 5.547
13 Si 0.819 3.181
14 H -0.193 1.193
15 H -0.205 1.205
16 H -0.182 1.182
17 C 0.041 3.959
18 H 0.105 0.895
19 C -0.225 4.225
20 N -0.356 5.356
21 C 0.394 3.606
22 O -0.423 6.423
23 C -0.445 4.445
24 C -0.090 4.090
25 N -0.140 5.140
26 N -0.270 5.270
27 S 0.640 5.360
28 H 0.103 0.897
29 H 0.107 0.893
30 H 0.064 0.936
31 H 0.255 0.745
32 H 0.127 0.873
33 H 0.130 0.870
34 H 0.080 0.920
35 H 0.100 0.900
36 H 0.080 0.920
37 H 0.101 0.899
38 H 0.251 0.749
39 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -9.156 -4.467 26.810 28.680
hybrid contribution 1.809 -2.393 -1.068 3.184
sum -7.346 -6.859 25.742 27.634
Atomic orbital electron populations
1.22286 0.93452 1.03998 1.02885 1.21059 0.95737 0.96826 0.83200
0.90613 1.45785 1.67919 1.14624 1.07957 1.19992 0.76530 0.86534
0.84490 1.90700 1.50370 1.17546 1.85088 1.23389 1.05597 1.03311
0.96012 1.85553 1.86637 1.17269 1.02777 1.23213 1.50781 0.98517
0.96852 0.89879 1.26103 0.95147 0.97146 1.00757 1.70173 1.46941
1.15420 1.22202 0.84978 0.78427 0.77800 0.76937 1.19310 1.20473
1.18231 1.21056 0.99059 0.93639 0.82163 0.89466 1.22270 1.03585
0.93392 1.03281 1.45825 1.26030 1.56720 1.07046 1.16505 0.83536
0.78971 0.81620 1.90872 1.22719 1.43465 1.85266 1.27945 1.04505
1.12475 0.99540 1.24772 1.01455 0.95959 0.86786 1.70778 0.99678
1.11125 1.32456 1.78682 1.16074 1.21861 1.10347 1.82296 1.13371
1.31768 1.08565 0.89748 0.89270 0.93596 0.74522 0.87299 0.86981
0.92048 0.90033 0.92012 0.89875 0.74893 0.75376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.24 9.00 71.98 0.65 -1.60 16
2 C 0.14 2.32 2.62 44.99 0.12 2.44 16
3 H 0.08 1.67 7.58 -2.39 -0.02 1.65 16
4 N -0.71 -14.61 4.99 -442.53 -2.21 -16.82 16
5 C 0.54 17.79 7.81 87.66 0.68 18.48 16
6 O -0.56 -23.65 15.52 -3.05 -0.05 -23.69 16
7 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16
8 S -0.15 -8.00 20.57 -56.49 -1.16 -9.17 16
9 C -0.55 -30.38 9.50 67.96 0.65 -29.73 16
10 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16
11 C 0.01 0.74 5.49 84.86 0.47 1.21 16
12 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16
13 Si 1.00 42.79 29.55 68.60 2.03 44.81 16
14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
15 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16
16 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16
17 C 0.15 1.90 2.62 44.99 0.12 2.02 16
18 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16
19 C -0.17 -1.63 9.00 71.98 0.65 -0.98 16
20 N -0.70 -7.48 4.99 -446.05 -2.22 -9.70 16
21 C 0.61 8.93 7.77 86.59 0.67 9.61 16
22 O -0.55 -11.86 16.64 -4.11 -0.07 -11.93 16
23 C -0.30 -3.60 6.81 24.62 0.17 -3.44 16
24 C 0.08 1.03 11.55 84.78 0.98 2.01 16
25 N -0.28 -4.68 11.54 -57.87 -0.67 -5.35 16
26 N -0.29 -4.51 12.51 37.02 0.46 -4.04 16
27 S 0.51 4.20 23.05 -56.49 -1.30 2.90 16
28 H 0.08 0.83 6.56 -2.39 -0.02 0.82 16
29 H 0.09 0.62 6.29 -2.39 -0.02 0.60 16
30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.42 5.96 6.58 -92.71 -0.61 5.35 16
32 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16
33 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16
34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16
35 H 0.08 0.65 6.29 -2.39 -0.02 0.63 16
36 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16
37 H 0.08 0.57 6.56 -2.39 -0.02 0.56 16
38 H 0.41 2.36 6.00 -92.71 -0.56 1.81 16
39 H 0.23 2.12 8.06 -2.91 -0.02 2.10 16
Total: -1.00 -81.39 362.42 0.65 -80.74
By element:
Atomic # 1 Polarization: 11.47 SS G_CDS: -0.04 Total: 11.43 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: 5.59 Total: -4.40 kcal
Atomic # 7 Polarization: -86.35 SS G_CDS: -4.35 Total: -90.70 kcal
Atomic # 8 Polarization: -35.51 SS G_CDS: -0.12 Total: -35.63 kcal
Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal
Atomic # 16 Polarization: -3.80 SS G_CDS: -2.46 Total: -6.27 kcal
Total: -81.39 0.65 -80.74 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734697281.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.561 kcal
(2) G-P(sol) polarization free energy of solvation -81.389 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.828 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.743 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds