Wall clock time and date at job start Sat Apr 11 2020 07:02:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46901 * 110.99817 * 2 1
4 4 C 1.50702 * 109.47248 * 66.04493 * 3 2 1
5 5 H 1.08003 * 119.99734 * 0.02562 * 4 3 2
6 6 C 1.37875 * 119.99829 * 179.97438 * 4 3 2
7 7 N 1.31517 * 119.99747 * 180.02562 * 6 4 3
8 8 Si 1.86796 * 120.00321 * 0.02562 * 6 4 3
9 9 H 1.48505 * 109.47250 * 90.00020 * 8 6 4
10 10 H 1.48502 * 109.47307 * 209.99758 * 8 6 4
11 11 H 1.48499 * 109.47327 * 329.99958 * 8 6 4
12 12 C 1.46900 * 111.00002 * 236.04905 * 2 1 3
13 13 C 1.53000 * 109.47231 * 199.76306 * 12 2 1
14 14 H 1.09000 * 109.47242 * 302.12178 * 13 12 2
15 15 O 1.42899 * 109.46893 * 62.12051 * 13 12 2
16 16 C 1.52999 * 109.47484 * 182.12075 * 13 12 2
17 17 O 1.42893 * 109.47265 * 175.00313 * 16 13 12
18 18 C 1.35932 * 117.00079 * 180.02562 * 17 16 13
19 19 C 1.38854 * 120.05821 * 89.99703 * 18 17 16
20 20 Cl 1.73601 * 120.04072 * 359.97438 * 19 18 17
21 21 C 1.38217 * 119.92043 * 179.97438 * 19 18 17
22 22 C 1.38290 * 120.04273 * 0.02562 * 21 19 18
23 23 C 1.38237 * 120.11741 * 359.97370 * 22 21 19
24 24 C 1.38190 * 120.07836 * 359.74926 * 23 22 21
25 25 N 1.48019 * 120.02281 * 180.25308 * 24 23 22
26 26 O 1.21793 * 119.99806 * 0.27666 * 25 24 23
27 27 O 1.21802 * 119.99664 * 180.27400 * 25 24 23
28 28 H 1.09000 * 109.47343 * 54.96728 * 1 2 3
29 29 H 1.08996 * 109.46996 * 174.96230 * 1 2 3
30 30 H 1.08999 * 109.46841 * 294.96248 * 1 2 3
31 31 H 1.08996 * 109.47434 * 186.04828 * 3 2 1
32 32 H 1.09008 * 109.46898 * 306.04767 * 3 2 1
33 33 H 0.97001 * 120.00131 * 180.02562 * 7 6 4
34 34 H 1.08994 * 109.47173 * 319.76356 * 12 2 1
35 35 H 1.08997 * 109.47385 * 79.76558 * 12 2 1
36 36 H 0.96702 * 114.00263 * 60.00246 * 15 13 12
37 37 H 1.09000 * 109.46724 * 295.00161 * 16 13 12
38 38 H 1.09002 * 109.47034 * 54.99729 * 16 13 12
39 39 H 1.08003 * 119.97777 * 179.97438 * 21 19 18
40 40 H 1.07999 * 119.94092 * 179.97438 * 22 21 19
41 41 H 1.07999 * 119.95820 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6369 2.0472 1.2984
5 1 1.0746 1.5112 2.0488
6 6 2.0276 3.3492 1.5288
7 7 1.7151 3.9387 2.6622
8 14 3.0007 4.2759 0.2313
9 1 2.0641 4.9805 -0.6806
10 1 3.8879 5.2669 0.8918
11 1 3.8239 3.3171 -0.5487
12 6 1.9955 -0.7659 -1.1376
13 6 3.4456 -1.1647 -0.8566
14 1 4.0401 -0.2693 -0.6756
15 8 3.4927 -2.0088 0.2954
16 6 4.0108 -1.9167 -2.0633
17 8 5.3974 -2.1872 -1.8492
18 6 6.0554 -2.8538 -2.8343
19 6 6.6761 -2.1486 -3.8567
20 17 6.6123 -0.4139 -3.8792
21 6 7.3448 -2.8293 -4.8567
22 6 7.3952 -4.2112 -4.8392
23 6 6.7779 -4.9150 -3.8221
24 6 6.1128 -4.2392 -2.8168
25 7 5.4570 -4.9938 -1.7253
26 8 5.5077 -6.2106 -1.7103
27 8 4.8667 -4.3979 -0.8421
28 1 -0.3634 0.5899 -0.8415
29 1 -0.3633 -1.0237 -0.0902
30 1 -0.3633 0.4337 0.9317
31 1 3.0797 1.3445 -0.1083
32 1 1.5610 1.9274 -0.8310
33 1 1.9897 4.8548 2.8242
34 1 1.3933 -1.6630 -1.2815
35 1 1.9552 -0.1531 -2.0381
36 1 2.9843 -2.8265 0.2051
37 1 3.4728 -2.8561 -2.1904
38 1 3.8935 -1.3068 -2.9590
39 1 7.8275 -2.2817 -5.6526
40 1 7.9178 -4.7415 -5.6215
41 1 6.8192 -5.9942 -3.8107
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000414134941.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:05
Heat of formation + Delta-G solvation = -48.124266 kcal
Electronic energy + Delta-G solvation = -28228.233505 eV
Core-core repulsion = 23945.938251 eV
Total energy + Delta-G solvation = -4282.295254 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.102 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-42.45408 -40.53017 -38.67000 -37.40814 -37.11740 -36.57475 -35.39723 -32.43030
-32.39966 -31.36210 -30.06782 -28.03022 -26.97813 -26.33418 -23.77830 -23.33056
-22.84483 -21.76969 -20.11084 -19.74615 -18.87142 -18.27983 -17.75143 -17.07517
-16.95575 -16.50104 -16.23136 -15.73868 -15.49003 -15.04184 -14.60707 -14.43684
-13.92478 -13.75600 -13.61309 -13.21490 -13.03345 -12.72493 -12.62291 -12.30035
-12.24495 -11.76047 -11.60702 -11.58111 -11.35591 -11.32899 -11.22153 -11.11655
-10.74588 -10.65849 -10.43441 -10.14658 -10.09975 -9.83562 -9.66084 -9.50652
-9.19478 -8.53905 -7.36754 -6.01057 -3.97641 -0.64144 0.04821 0.91564
0.97753 1.49369 2.37670 2.88627 3.28763 3.36976 3.38143 3.76745
3.98148 4.13974 4.16203 4.33097 4.44526 4.60145 4.67803 4.92604
4.94784 5.03863 5.09959 5.21608 5.29109 5.30097 5.38657 5.45950
5.52752 5.83383 6.01111 6.09290 6.23643 6.29855 6.66530 6.78109
6.82830 6.97454 7.45587 7.61919 7.87825 8.02744 8.21277 8.69212
9.08881 9.60482 11.12364
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.013684 B = 0.003254 C = 0.002792
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2045.649186 B = 8601.880243 C =10025.417405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 N -0.518 5.518
3 C 0.161 3.839
4 C -0.505 4.505
5 H 0.082 0.918
6 C 0.068 3.932
7 N -0.900 5.900
8 Si 0.873 3.127
9 H -0.279 1.279
10 H -0.285 1.285
11 H -0.268 1.268
12 C 0.026 3.974
13 C 0.122 3.878
14 H 0.110 0.890
15 O -0.521 6.521
16 C 0.044 3.956
17 O -0.296 6.296
18 C 0.180 3.820
19 C -0.070 4.070
20 Cl -0.019 7.019
21 C -0.048 4.048
22 C -0.117 4.117
23 C -0.042 4.042
24 C -0.062 4.062
25 N 0.026 4.974
26 O -0.175 6.175
27 O -0.108 6.108
28 H 0.012 0.988
29 H 0.047 0.953
30 H 0.080 0.920
31 H 0.029 0.971
32 H -0.018 1.018
33 H 0.263 0.737
34 H 0.068 0.932
35 H 0.033 0.967
36 H 0.367 0.633
37 H 0.058 0.942
38 H 0.063 0.937
39 H 0.157 0.843
40 H 0.159 0.841
41 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.348 -17.923 -21.599 30.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 N -0.242 5.242
3 C 0.035 3.965
4 C -0.543 4.543
5 H 0.100 0.900
6 C -0.133 4.133
7 N -0.539 5.539
8 Si 0.700 3.300
9 H -0.204 1.204
10 H -0.211 1.211
11 H -0.193 1.193
12 C -0.103 4.103
13 C 0.062 3.938
14 H 0.128 0.872
15 O -0.324 6.324
16 C -0.030 4.030
17 O -0.212 6.212
18 C 0.132 3.868
19 C -0.098 4.098
20 Cl 0.010 6.990
21 C -0.067 4.067
22 C -0.136 4.136
23 C -0.061 4.061
24 C -0.146 4.146
25 N 0.548 4.452
26 O -0.384 6.384
27 O -0.334 6.334
28 H 0.031 0.969
29 H 0.065 0.935
30 H 0.098 0.902
31 H 0.047 0.953
32 H 0.000 1.000
33 H 0.073 0.927
34 H 0.087 0.913
35 H 0.051 0.949
36 H 0.213 0.787
37 H 0.077 0.923
38 H 0.081 0.919
39 H 0.174 0.826
40 H 0.176 0.824
41 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 12.283 -16.948 -21.207 29.796
hybrid contribution -0.238 0.559 -1.638 1.747
sum 12.044 -16.389 -22.845 30.587
Atomic orbital electron populations
1.22240 0.87801 0.99052 1.01688 1.61802 1.07169 1.16406 1.38804
1.20273 0.95298 0.83852 0.97094 1.21015 1.35362 0.97062 1.00864
0.90001 1.24888 0.95768 0.97390 0.95272 1.69891 1.46999 1.13214
1.23840 0.86902 0.80685 0.80124 0.82277 1.20449 1.21080 1.19253
1.22642 0.95210 0.98710 0.93754 1.21826 0.94995 0.93585 0.83427
0.87194 1.86737 1.74326 1.34285 1.37053 1.23795 0.77969 1.00058
1.01183 1.86228 1.23931 1.73916 1.37114 1.18204 0.93296 0.87375
0.87892 1.21328 1.03969 0.88007 0.96532 1.98456 1.97041 1.05431
1.98083 1.21514 0.94134 0.94630 0.96437 1.21191 1.00258 0.93178
0.98926 1.21155 0.92027 1.02563 0.90352 1.21572 1.07885 0.91048
0.94070 1.43307 0.99602 1.01052 1.01276 1.94534 1.65880 0.95301
1.82654 1.94687 1.39640 1.70645 1.28434 0.96934 0.93459 0.90165
0.95307 1.00040 0.92704 0.91345 0.94867 0.78691 0.92333 0.91891
0.82581 0.82360 0.82003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.76 9.31 60.07 0.56 1.32 16
2 N -0.52 -10.83 4.59 -244.37 -1.12 -11.95 16
3 C 0.16 3.94 3.62 -4.97 -0.02 3.92 16
4 C -0.50 -14.61 9.13 -34.44 -0.31 -14.92 16
5 H 0.08 2.58 7.34 -52.48 -0.39 2.20 16
6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16
7 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16
8 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16
9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16
11 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16
12 C 0.03 0.43 4.65 -3.82 -0.02 0.41 16
13 C 0.12 1.97 3.32 -26.73 -0.09 1.88 16
14 H 0.11 2.06 6.73 -51.93 -0.35 1.71 16
15 O -0.52 -9.15 12.93 -40.83 -0.53 -9.68 16
16 C 0.04 0.57 5.03 37.16 0.19 0.75 16
17 O -0.30 -4.13 7.86 -45.53 -0.36 -4.49 16
18 C 0.18 2.03 5.70 -39.20 -0.22 1.81 16
19 C -0.07 -0.63 6.33 -39.36 -0.25 -0.88 16
20 Cl -0.02 -0.20 28.51 -51.86 -1.48 -1.68 16
21 C -0.05 -0.26 9.83 -39.57 -0.39 -0.65 16
22 C -0.12 -0.48 10.04 -39.56 -0.40 -0.88 16
23 C -0.04 -0.28 9.55 -39.60 -0.38 -0.65 16
24 C -0.06 -0.65 6.86 -79.81 -0.55 -1.19 16
25 N 0.03 0.34 4.45 34.03 0.15 0.49 16
26 O -0.18 -2.27 18.45 -29.46 -0.54 -2.81 16
27 O -0.11 -1.60 15.59 -36.59 -0.57 -2.17 16
28 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16
29 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16
30 H 0.08 1.69 7.01 -51.93 -0.36 1.32 16
31 H 0.03 0.72 5.66 -51.93 -0.29 0.43 16
32 H -0.02 -0.44 7.50 -51.92 -0.39 -0.83 16
33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
34 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16
35 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16
36 H 0.37 5.20 8.83 45.56 0.40 5.60 16
37 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16
38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16
40 H 0.16 0.09 8.06 -52.49 -0.42 -0.33 16
41 H 0.16 0.78 7.61 -52.49 -0.40 0.38 16
LS Contribution 365.84 15.07 5.51 5.51
Total: -1.00 -35.01 365.84 -9.05 -44.06
By element:
Atomic # 1 Polarization: 4.26 SS G_CDS: -4.25 Total: 0.01 kcal
Atomic # 6 Polarization: -5.19 SS G_CDS: -1.98 Total: -7.17 kcal
Atomic # 7 Polarization: -38.53 SS G_CDS: -0.20 Total: -38.73 kcal
Atomic # 8 Polarization: -17.15 SS G_CDS: -2.00 Total: -19.15 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal
Atomic # 17 Polarization: -0.20 SS G_CDS: -1.48 Total: -1.68 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -35.01 -9.05 -44.06 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000414134941.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.062 kcal
(2) G-P(sol) polarization free energy of solvation -35.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds