Wall clock time and date at job start Sat Apr 11 2020 07:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46901 * 110.99817 * 2 1
4 4 C 1.50702 * 109.47248 * 66.04493 * 3 2 1
5 5 H 1.08003 * 119.99734 * 0.02562 * 4 3 2
6 6 C 1.37875 * 119.99829 * 179.97438 * 4 3 2
7 7 N 1.31517 * 119.99747 * 180.02562 * 6 4 3
8 8 Si 1.86796 * 120.00321 * 0.02562 * 6 4 3
9 9 H 1.48505 * 109.47250 * 90.00020 * 8 6 4
10 10 H 1.48502 * 109.47307 * 209.99758 * 8 6 4
11 11 H 1.48499 * 109.47327 * 329.99958 * 8 6 4
12 12 C 1.46900 * 111.00002 * 236.04905 * 2 1 3
13 13 C 1.53000 * 109.47231 * 199.76306 * 12 2 1
14 14 H 1.09000 * 109.47242 * 302.12178 * 13 12 2
15 15 O 1.42899 * 109.46893 * 62.12051 * 13 12 2
16 16 C 1.52999 * 109.47484 * 182.12075 * 13 12 2
17 17 O 1.42893 * 109.47265 * 175.00313 * 16 13 12
18 18 C 1.35932 * 117.00079 * 180.02562 * 17 16 13
19 19 C 1.38854 * 120.05821 * 89.99703 * 18 17 16
20 20 Cl 1.73601 * 120.04072 * 359.97438 * 19 18 17
21 21 C 1.38217 * 119.92043 * 179.97438 * 19 18 17
22 22 C 1.38290 * 120.04273 * 0.02562 * 21 19 18
23 23 C 1.38237 * 120.11741 * 359.97370 * 22 21 19
24 24 C 1.38190 * 120.07836 * 359.74926 * 23 22 21
25 25 N 1.48019 * 120.02281 * 180.25308 * 24 23 22
26 26 O 1.21793 * 119.99806 * 0.27666 * 25 24 23
27 27 O 1.21802 * 119.99664 * 180.27400 * 25 24 23
28 28 H 1.09000 * 109.47343 * 54.96728 * 1 2 3
29 29 H 1.08996 * 109.46996 * 174.96230 * 1 2 3
30 30 H 1.08999 * 109.46841 * 294.96248 * 1 2 3
31 31 H 1.08996 * 109.47434 * 186.04828 * 3 2 1
32 32 H 1.09008 * 109.46898 * 306.04767 * 3 2 1
33 33 H 0.97001 * 120.00131 * 180.02562 * 7 6 4
34 34 H 1.08994 * 109.47173 * 319.76356 * 12 2 1
35 35 H 1.08997 * 109.47385 * 79.76558 * 12 2 1
36 36 H 0.96702 * 114.00263 * 60.00246 * 15 13 12
37 37 H 1.09000 * 109.46724 * 295.00161 * 16 13 12
38 38 H 1.09002 * 109.47034 * 54.99729 * 16 13 12
39 39 H 1.08003 * 119.97777 * 179.97438 * 21 19 18
40 40 H 1.07999 * 119.94092 * 179.97438 * 22 21 19
41 41 H 1.07999 * 119.95820 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6369 2.0472 1.2984
5 1 1.0746 1.5112 2.0488
6 6 2.0276 3.3492 1.5288
7 7 1.7151 3.9387 2.6622
8 14 3.0007 4.2759 0.2313
9 1 2.0641 4.9805 -0.6806
10 1 3.8879 5.2669 0.8918
11 1 3.8239 3.3171 -0.5487
12 6 1.9955 -0.7659 -1.1376
13 6 3.4456 -1.1647 -0.8566
14 1 4.0401 -0.2693 -0.6756
15 8 3.4927 -2.0088 0.2954
16 6 4.0108 -1.9167 -2.0633
17 8 5.3974 -2.1872 -1.8492
18 6 6.0554 -2.8538 -2.8343
19 6 6.6761 -2.1486 -3.8567
20 17 6.6123 -0.4139 -3.8792
21 6 7.3448 -2.8293 -4.8567
22 6 7.3952 -4.2112 -4.8392
23 6 6.7779 -4.9150 -3.8221
24 6 6.1128 -4.2392 -2.8168
25 7 5.4570 -4.9938 -1.7253
26 8 5.5077 -6.2106 -1.7103
27 8 4.8667 -4.3979 -0.8421
28 1 -0.3634 0.5899 -0.8415
29 1 -0.3633 -1.0237 -0.0902
30 1 -0.3633 0.4337 0.9317
31 1 3.0797 1.3445 -0.1083
32 1 1.5610 1.9274 -0.8310
33 1 1.9897 4.8548 2.8242
34 1 1.3933 -1.6630 -1.2815
35 1 1.9552 -0.1531 -2.0381
36 1 2.9843 -2.8265 0.2051
37 1 3.4728 -2.8561 -2.1904
38 1 3.8935 -1.3068 -2.9590
39 1 7.8275 -2.2817 -5.6526
40 1 7.9178 -4.7415 -5.6215
41 1 6.8192 -5.9942 -3.8107
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000414134941.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:04
Heat of formation + Delta-G solvation = -73.847147 kcal
Electronic energy + Delta-G solvation = -28229.348933 eV
Core-core repulsion = 23945.938251 eV
Total energy + Delta-G solvation = -4283.410682 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.102 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-43.31482 -41.28391 -39.68771 -38.59375 -37.79138 -37.52443 -36.87396 -34.60240
-33.05190 -32.25186 -31.12211 -29.97857 -27.93947 -27.42588 -25.35816 -24.09536
-23.65220 -23.12583 -21.72138 -20.57558 -19.76303 -19.19028 -18.88505 -18.64487
-17.86594 -17.72586 -17.00664 -16.76510 -16.45232 -16.23788 -16.07699 -15.82659
-15.33636 -14.99282 -14.55139 -14.47133 -14.29564 -14.06274 -13.65949 -13.31141
-13.23366 -13.07747 -12.94542 -12.70801 -12.65536 -12.55226 -12.38751 -12.26300
-12.23010 -12.13238 -11.84330 -11.72014 -11.46047 -11.32253 -10.87243 -10.79402
-10.69668 -10.13238 -8.99079 -8.28883 -6.31566 -1.38826 -0.51446 0.12049
0.23292 0.82927 1.29597 1.33549 1.43504 1.78047 2.15823 2.32530
3.02257 3.07347 3.28112 3.40476 3.56756 3.64518 3.74557 3.81139
3.86274 3.94021 4.12537 4.22124 4.25553 4.46190 4.49700 4.58673
4.67077 4.68571 4.77754 4.87197 4.95745 5.04158 5.06036 5.20149
5.24806 5.54649 5.91866 5.98894 6.35674 6.47009 6.63576 6.74681
7.04342 7.31329 8.88270
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.013684 B = 0.003254 C = 0.002792
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2045.649186 B = 8601.880243 C =10025.417405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.044 3.956
2 N -0.542 5.542
3 C 0.173 3.827
4 C -0.514 4.514
5 H 0.037 0.963
6 C 0.006 3.994
7 N -0.949 5.949
8 Si 0.944 3.056
9 H -0.262 1.262
10 H -0.281 1.281
11 H -0.252 1.252
12 C 0.030 3.970
13 C 0.124 3.876
14 H 0.076 0.924
15 O -0.547 6.547
16 C 0.058 3.942
17 O -0.323 6.323
18 C 0.150 3.850
19 C -0.080 4.080
20 Cl -0.038 7.038
21 C -0.031 4.031
22 C -0.089 4.089
23 C -0.035 4.035
24 C -0.081 4.081
25 N 0.028 4.972
26 O -0.167 6.167
27 O -0.167 6.167
28 H 0.021 0.979
29 H 0.084 0.916
30 H 0.045 0.955
31 H 0.024 0.976
32 H -0.011 1.011
33 H 0.267 0.733
34 H 0.101 0.899
35 H 0.049 0.951
36 H 0.379 0.621
37 H 0.069 0.931
38 H 0.077 0.923
39 H 0.192 0.808
40 H 0.210 0.790
41 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.360 -19.533 -26.399 35.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 N -0.266 5.266
3 C 0.046 3.954
4 C -0.552 4.552
5 H 0.055 0.945
6 C -0.191 4.191
7 N -0.590 5.590
8 Si 0.767 3.233
9 H -0.187 1.187
10 H -0.206 1.206
11 H -0.176 1.176
12 C -0.099 4.099
13 C 0.064 3.936
14 H 0.094 0.906
15 O -0.352 6.352
16 C -0.016 4.016
17 O -0.239 6.239
18 C 0.103 3.897
19 C -0.108 4.108
20 Cl -0.009 7.009
21 C -0.049 4.049
22 C -0.107 4.107
23 C -0.054 4.054
24 C -0.165 4.165
25 N 0.544 4.456
26 O -0.382 6.382
27 O -0.380 6.380
28 H 0.040 0.960
29 H 0.102 0.898
30 H 0.064 0.936
31 H 0.042 0.958
32 H 0.007 0.993
33 H 0.075 0.925
34 H 0.119 0.881
35 H 0.067 0.933
36 H 0.227 0.773
37 H 0.087 0.913
38 H 0.095 0.905
39 H 0.209 0.791
40 H 0.227 0.773
41 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 14.244 -18.527 -25.967 34.934
hybrid contribution -0.781 0.857 -0.223 1.180
sum 13.463 -17.670 -26.190 34.342
Atomic orbital electron populations
1.22198 0.86777 1.01222 1.00195 1.61631 1.08334 1.14631 1.41985
1.19978 0.95035 0.85813 0.94583 1.21276 1.34648 0.97394 1.01930
0.94514 1.25852 0.96977 0.98489 0.97749 1.70055 1.48730 1.13872
1.26334 0.85759 0.79355 0.78745 0.79395 1.18713 1.20643 1.17599
1.22706 0.95469 0.99356 0.92353 1.21683 0.94763 0.92757 0.84401
0.90584 1.86682 1.74974 1.35183 1.38384 1.23492 0.78378 1.00203
0.99550 1.86164 1.24126 1.74608 1.39029 1.18453 0.94704 0.87828
0.88709 1.21493 1.05003 0.87157 0.97195 1.98448 1.97197 1.07064
1.98151 1.22030 0.91981 0.95371 0.95508 1.21789 0.97993 0.92527
0.98389 1.21624 0.90682 1.03748 0.89374 1.21778 1.09612 0.90817
0.94338 1.43690 0.99196 1.01042 1.01662 1.94483 1.65143 0.95986
1.82588 1.94692 1.42216 1.70684 1.30409 0.96050 0.89781 0.93634
0.95800 0.99342 0.92453 0.88120 0.93333 0.77285 0.91290 0.90483
0.79111 0.77344 0.79966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.66 9.31 127.69 1.19 2.85 16
2 N -0.54 -22.80 4.59 -927.05 -4.25 -27.06 16
3 C 0.17 8.58 3.62 85.56 0.31 8.89 16
4 C -0.51 -31.03 9.13 25.60 0.23 -30.80 16
5 H 0.04 2.48 7.34 -2.91 -0.02 2.46 16
6 C 0.01 0.38 5.47 84.65 0.46 0.84 16
7 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16
8 Si 0.94 45.46 27.47 68.60 1.88 47.34 16
9 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16
10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16
11 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16
12 C 0.03 0.93 4.65 86.30 0.40 1.33 16
13 C 0.12 4.06 3.32 30.59 0.10 4.16 16
14 H 0.08 2.98 6.73 -2.39 -0.02 2.96 16
15 O -0.55 -20.00 12.93 -143.63 -1.86 -21.86 16
16 C 0.06 1.47 5.03 71.98 0.36 1.83 16
17 O -0.32 -9.15 7.86 -67.92 -0.53 -9.68 16
18 C 0.15 3.23 5.70 22.52 0.13 3.36 16
19 C -0.08 -1.25 6.33 22.41 0.14 -1.11 16
20 Cl -0.04 -0.71 28.51 -2.72 -0.08 -0.79 16
21 C -0.03 -0.18 9.83 22.28 0.22 0.04 16
22 C -0.09 -0.21 10.04 22.28 0.22 0.01 16
23 C -0.04 -0.33 9.55 22.26 0.21 -0.11 16
24 C -0.08 -1.57 6.86 36.47 0.25 -1.32 16
25 N 0.03 0.73 4.45 -46.25 -0.21 0.53 16
26 O -0.17 -4.21 18.45 18.89 0.35 -3.86 16
27 O -0.17 -5.14 15.59 25.70 0.40 -4.74 16
28 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16
29 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16
30 H 0.04 2.00 7.01 -2.39 -0.02 1.98 16
31 H 0.02 1.21 5.66 -2.39 -0.01 1.20 16
32 H -0.01 -0.52 7.50 -2.38 -0.02 -0.54 16
33 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16
34 H 0.10 2.49 7.75 -2.39 -0.02 2.48 16
35 H 0.05 1.40 8.00 -2.39 -0.02 1.38 16
36 H 0.38 11.20 8.83 -74.06 -0.65 10.54 16
37 H 0.07 1.57 7.50 -2.39 -0.02 1.55 16
38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
39 H 0.19 -0.17 8.06 -2.91 -0.02 -0.19 16
40 H 0.21 -1.46 8.06 -2.91 -0.02 -1.48 16
41 H 0.18 0.94 7.61 -2.91 -0.02 0.92 16
Total: -1.00 -82.95 365.84 0.61 -82.34
By element:
Atomic # 1 Polarization: 8.50 SS G_CDS: 0.37 Total: 8.87 kcal
Atomic # 6 Polarization: -14.26 SS G_CDS: 4.24 Total: -10.02 kcal
Atomic # 7 Polarization: -83.44 SS G_CDS: -4.16 Total: -87.60 kcal
Atomic # 8 Polarization: -38.50 SS G_CDS: -1.64 Total: -40.14 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal
Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal
Total: -82.95 0.61 -82.34 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000414134941.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.491 kcal
(2) G-P(sol) polarization free energy of solvation -82.953 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.338 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.847 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds