Wall clock time and date at job start Sat Apr 11 2020 07:03:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31297 * 1
3 3 Si 1.86797 * 119.99954 * 2 1
4 4 H 1.48503 * 109.47200 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47194 * 300.00248 * 3 2 1
6 6 H 1.48507 * 109.47272 * 60.00337 * 3 2 1
7 7 C 1.38985 * 119.99974 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99960 * 180.02562 * 7 2 1
9 9 N 1.37329 * 119.99748 * 0.02562 * 7 2 1
10 10 C 1.36492 * 126.06516 * 180.28130 * 9 7 2
11 11 C 1.35678 * 107.50685 * 180.16325 * 10 9 7
12 12 N 1.40595 * 126.08423 * 179.84476 * 11 10 9
13 13 C 1.34770 * 119.99972 * 179.71377 * 12 11 10
14 14 O 1.21300 * 120.00578 * 359.97438 * 13 12 11
15 15 C 1.50703 * 119.99688 * 179.97438 * 13 12 11
16 16 H 1.08998 * 109.45218 * 300.02170 * 15 13 12
17 17 C 1.52897 * 109.46498 * 59.99915 * 15 13 12
18 18 C 1.50506 * 109.90252 * 71.41730 * 17 15 13
19 19 O 1.21287 * 119.61745 * 215.16923 * 18 17 15
20 20 N 1.34566 * 120.76567 * 35.19424 * 18 17 15
21 21 C 1.39821 * 120.45520 * 359.20075 * 20 18 17
22 22 C 1.38826 * 120.17081 * 161.50074 * 21 20 18
23 23 C 1.38329 * 119.87508 * 179.97438 * 22 21 20
24 24 F 1.35103 * 119.97995 * 179.97438 * 23 22 21
25 25 C 1.38531 * 120.03689 * 0.02562 * 23 22 21
26 26 C 1.38241 * 120.12243 * 359.97438 * 25 23 22
27 27 C 1.38111 * 120.05823 * 0.02562 * 26 25 23
28 28 C 1.40647 * 107.83560 * 359.57463 * 11 10 9
29 29 N 1.30907 * 108.38539 * 0.26867 * 28 11 10
30 30 H 0.97000 * 119.99708 * 359.97438 * 1 2 3
31 31 H 1.07998 * 126.24723 * 0.02562 * 10 9 7
32 32 H 0.96997 * 119.99539 * 359.71078 * 12 11 10
33 33 H 1.09005 * 109.40114 * 311.28960 * 17 15 13
34 34 H 1.09001 * 109.40264 * 191.55223 * 17 15 13
35 35 H 0.96994 * 119.76614 * 179.22692 * 20 18 17
36 36 H 1.08002 * 120.06202 * 0.02993 * 22 21 20
37 37 H 1.07993 * 119.94174 * 179.97438 * 25 23 22
38 38 H 1.07994 * 119.97146 * 180.02562 * 26 25 23
39 39 H 1.08004 * 125.80831 * 180.28243 * 28 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3130 0.0000 0.0000
3 14 2.2469 1.6177 0.0000
4 1 3.7070 1.3464 0.0006
5 1 1.8882 2.3964 -1.2124
6 1 1.8883 2.3964 1.2126
7 6 2.0079 -1.2037 0.0005
8 1 3.0879 -1.2036 0.0010
9 7 1.3212 -2.3929 0.0005
10 6 1.8749 -3.6405 0.0064
11 6 0.8578 -4.5384 0.0004
12 7 0.9890 -5.9383 0.0005
13 6 -0.1102 -6.7181 -0.0001
14 8 -1.2127 -6.2124 -0.0001
15 6 0.0305 -8.2185 -0.0007
16 1 0.5766 -8.5316 -0.8906
17 6 0.7955 -8.6590 1.2477
18 6 -0.0698 -8.4851 2.4668
19 8 0.4353 -8.1510 3.5177
20 7 -1.3973 -8.6964 2.4045
21 6 -2.0002 -9.0663 1.1984
22 6 -3.2606 -9.6483 1.1981
23 6 -3.8516 -10.0115 0.0013
24 9 -5.0778 -10.5785 -0.0014
25 6 -3.1863 -9.7950 -1.1943
26 6 -1.9312 -9.2155 -1.1949
27 6 -1.3369 -8.8512 -0.0025
28 6 -0.3513 -3.8199 0.0005
29 7 -0.0716 -2.5410 0.0005
30 1 -0.4850 0.8401 0.0004
31 1 2.9300 -3.8708 0.0123
32 1 1.8706 -6.3427 0.0008
33 1 1.6956 -8.0534 1.3534
34 1 1.0759 -9.7078 1.1494
35 1 -1.9396 -8.5910 3.2018
36 1 -3.7791 -9.8165 2.1305
37 1 -3.6489 -10.0795 -2.1278
38 1 -1.4149 -9.0475 -2.1284
39 1 -1.3420 -4.2500 0.0008
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000139527047.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:46
Heat of formation + Delta-G solvation = -0.492163 kcal
Electronic energy + Delta-G solvation = -29098.136027 eV
Core-core repulsion = 24729.171552 eV
Total energy + Delta-G solvation = -4368.964475 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.107 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-49.12975 -41.53784 -39.80713 -38.85813 -38.41482 -35.33482 -34.32316 -34.19520
-33.09429 -30.43209 -30.19994 -29.55604 -27.86428 -25.74576 -24.62780 -23.38736
-23.15199 -21.39600 -20.74350 -19.61506 -19.23774 -18.51868 -17.76930 -17.39008
-17.02077 -16.23658 -16.13931 -15.80187 -15.71261 -15.55948 -15.43238 -15.04234
-14.58016 -14.23968 -14.04070 -13.86262 -13.56432 -13.48206 -13.22010 -13.02366
-12.93729 -12.51158 -12.18870 -11.79083 -11.65226 -11.55921 -11.43737 -11.28083
-10.94394 -10.84316 -10.51448 -10.29216 -10.19828 -9.31933 -9.19083 -9.01678
-8.82008 -8.32745 -8.07377 -6.72960 -6.56653 -4.23983 0.77513 0.89467
2.28885 2.68505 2.74396 2.99314 3.04478 3.10715 3.21527 3.61440
3.65338 3.86017 3.88957 4.16346 4.20410 4.29877 4.42559 4.51199
4.67459 4.75275 4.87149 4.96101 5.01589 5.12589 5.15207 5.30260
5.46635 5.58563 5.67904 5.86286 6.02884 6.22489 6.37819 6.42409
6.55635 6.85525 6.87975 6.93502 7.07041 7.21940 7.73992 7.84637
8.11201 8.25233 8.59145 8.78627 9.36609 9.65684 10.39365
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.018540 B = 0.002596 C = 0.002450
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1509.861136 B =10784.581880 C =11426.453958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.769 5.769
2 C 0.046 3.954
3 Si 0.935 3.065
4 H -0.263 1.263
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.323 4.323
8 H 0.117 0.883
9 N -0.142 5.142
10 C -0.083 4.083
11 C -0.061 4.061
12 N -0.620 5.620
13 C 0.496 3.504
14 O -0.520 6.520
15 C -0.062 4.062
16 H 0.124 0.876
17 C -0.133 4.133
18 C 0.525 3.475
19 O -0.516 6.516
20 N -0.659 5.659
21 C 0.208 3.792
22 C -0.192 4.192
23 C 0.133 3.867
24 F -0.137 7.137
25 C -0.176 4.176
26 C -0.039 4.039
27 C -0.107 4.107
28 C -0.032 4.032
29 N -0.260 5.260
30 H 0.274 0.726
31 H 0.146 0.854
32 H 0.396 0.604
33 H 0.116 0.884
34 H 0.117 0.883
35 H 0.414 0.586
36 H 0.140 0.860
37 H 0.139 0.861
38 H 0.141 0.859
39 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.291 -20.993 -1.845 21.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.396 5.396
2 C -0.171 4.171
3 Si 0.759 3.241
4 H -0.187 1.187
5 H -0.199 1.199
6 H -0.199 1.199
7 C -0.455 4.455
8 H 0.134 0.866
9 N 0.090 4.910
10 C -0.234 4.234
11 C -0.166 4.166
12 N -0.262 5.262
13 C 0.281 3.719
14 O -0.395 6.395
15 C -0.084 4.084
16 H 0.142 0.858
17 C -0.173 4.173
18 C 0.313 3.687
19 O -0.390 6.390
20 N -0.303 5.303
21 C 0.111 3.889
22 C -0.214 4.214
23 C 0.113 3.887
24 F -0.115 7.115
25 C -0.195 4.195
26 C -0.058 4.058
27 C -0.110 4.110
28 C -0.207 4.207
29 N -0.091 5.091
30 H 0.085 0.915
31 H 0.163 0.837
32 H 0.229 0.771
33 H 0.134 0.866
34 H 0.135 0.865
35 H 0.252 0.748
36 H 0.158 0.842
37 H 0.157 0.843
38 H 0.158 0.842
39 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -1.339 -19.096 -1.350 19.191
hybrid contribution 0.672 -0.365 0.331 0.833
sum -0.667 -19.462 -1.019 19.500
Atomic orbital electron populations
1.70229 1.06133 1.27880 1.35348 1.25648 0.95711 1.00295 0.95485
0.85763 0.79631 0.80261 0.78480 1.18678 1.19905 1.19915 1.19923
0.91676 0.80523 1.53364 0.86553 1.44560 1.04039 1.03328 1.39029
1.21257 0.96837 0.85382 1.19880 1.17236 0.94314 0.81064 1.24007
1.42449 1.07982 1.04661 1.71109 1.20031 0.84933 0.87620 0.79358
1.90636 1.25614 1.74347 1.48940 1.20204 0.94346 0.93567 1.00259
0.85836 1.21781 0.98935 1.05769 0.90840 1.20591 0.82012 0.75406
0.90720 1.90812 1.72423 1.44217 1.31542 1.43554 1.08709 1.67023
1.11002 1.17173 0.91997 0.94392 0.85336 1.20559 0.96170 1.06269
0.98385 1.17309 0.80883 0.96583 0.93955 1.91514 1.40345 1.82279
1.97385 1.21032 0.96395 1.04910 0.97211 1.20652 0.93750 0.94213
0.97160 1.18924 0.96675 1.03409 0.91999 1.24080 0.97958 0.90772
1.07939 1.78258 0.90143 1.15055 1.25677 0.91514 0.83677 0.77058
0.86584 0.86534 0.74787 0.84170 0.84316 0.84171 0.80881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -21.58 11.81 55.49 0.66 -20.92 16
2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16
3 Si 0.93 18.96 29.55 -169.99 -5.02 13.94 16
4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16
5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16
6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
7 C -0.32 -8.53 10.25 -14.81 -0.15 -8.68 16
8 H 0.12 2.75 7.83 -52.48 -0.41 2.34 16
9 N -0.14 -3.89 3.74 -11.41 -0.04 -3.94 16
10 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16
11 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16
12 N -0.62 -10.30 5.27 -10.00 -0.05 -10.36 16
13 C 0.50 7.90 6.77 -10.99 -0.07 7.82 16
14 O -0.52 -10.53 13.19 5.54 0.07 -10.46 16
15 C -0.06 -0.63 2.76 -92.99 -0.26 -0.88 16
16 H 0.12 0.79 8.06 -51.93 -0.42 0.38 16
17 C -0.13 -1.22 5.49 -28.03 -0.15 -1.38 16
18 C 0.52 6.79 7.37 -11.17 -0.08 6.71 16
19 O -0.52 -8.59 17.91 5.55 0.10 -8.49 16
20 N -0.66 -7.60 5.36 -10.01 -0.05 -7.66 16
21 C 0.21 2.30 6.50 -83.76 -0.54 1.76 16
22 C -0.19 -1.92 9.90 -39.33 -0.39 -2.31 16
23 C 0.13 1.35 7.30 -39.44 -0.29 1.06 16
24 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16
25 C -0.18 -1.60 10.02 -39.47 -0.40 -2.00 16
26 C -0.04 -0.36 9.69 -39.63 -0.38 -0.74 16
27 C -0.11 -1.14 4.15 -104.45 -0.43 -1.58 16
28 C -0.03 -0.84 10.85 -17.04 -0.18 -1.02 16
29 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16
30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16
31 H 0.15 2.80 8.06 -52.49 -0.42 2.37 16
32 H 0.40 4.87 8.15 -40.82 -0.33 4.54 16
33 H 0.12 1.00 7.27 -51.93 -0.38 0.62 16
34 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.41 4.23 8.83 -40.82 -0.36 3.87 16
36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16
37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16
38 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16
39 H 0.17 4.54 5.92 -52.48 -0.31 4.23 16
LS Contribution 345.50 15.07 5.21 5.21
Total: -1.00 -36.93 345.50 -6.44 -43.37
By element:
Atomic # 1 Polarization: 15.66 SS G_CDS: -3.46 Total: 12.20 kcal
Atomic # 6 Polarization: -0.02 SS G_CDS: -4.20 Total: -4.22 kcal
Atomic # 7 Polarization: -50.97 SS G_CDS: 0.83 Total: -50.14 kcal
Atomic # 8 Polarization: -19.12 SS G_CDS: 0.17 Total: -18.94 kcal
Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal
Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -36.93 -6.44 -43.37 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000139527047.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.878 kcal
(2) G-P(sol) polarization free energy of solvation -36.930 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds