Wall clock time and date at job start Sat Apr 11 2020 07:03:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31297 * 1
3 3 Si 1.86797 * 119.99954 * 2 1
4 4 H 1.48503 * 109.47200 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47194 * 300.00248 * 3 2 1
6 6 H 1.48507 * 109.47272 * 60.00337 * 3 2 1
7 7 C 1.38985 * 119.99974 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99960 * 180.02562 * 7 2 1
9 9 N 1.37329 * 119.99748 * 0.02562 * 7 2 1
10 10 C 1.36492 * 126.06516 * 180.28130 * 9 7 2
11 11 C 1.35678 * 107.50685 * 180.16325 * 10 9 7
12 12 N 1.40595 * 126.08423 * 179.84476 * 11 10 9
13 13 C 1.34770 * 119.99972 * 179.71377 * 12 11 10
14 14 O 1.21300 * 120.00578 * 359.97438 * 13 12 11
15 15 C 1.50703 * 119.99688 * 179.97438 * 13 12 11
16 16 H 1.08998 * 109.45218 * 300.02170 * 15 13 12
17 17 C 1.52897 * 109.46498 * 59.99915 * 15 13 12
18 18 C 1.50506 * 109.90252 * 71.41730 * 17 15 13
19 19 O 1.21287 * 119.61745 * 215.16923 * 18 17 15
20 20 N 1.34566 * 120.76567 * 35.19424 * 18 17 15
21 21 C 1.39821 * 120.45520 * 359.20075 * 20 18 17
22 22 C 1.38826 * 120.17081 * 161.50074 * 21 20 18
23 23 C 1.38329 * 119.87508 * 179.97438 * 22 21 20
24 24 F 1.35103 * 119.97995 * 179.97438 * 23 22 21
25 25 C 1.38531 * 120.03689 * 0.02562 * 23 22 21
26 26 C 1.38241 * 120.12243 * 359.97438 * 25 23 22
27 27 C 1.38111 * 120.05823 * 0.02562 * 26 25 23
28 28 C 1.40647 * 107.83560 * 359.57463 * 11 10 9
29 29 N 1.30907 * 108.38539 * 0.26867 * 28 11 10
30 30 H 0.97000 * 119.99708 * 359.97438 * 1 2 3
31 31 H 1.07998 * 126.24723 * 0.02562 * 10 9 7
32 32 H 0.96997 * 119.99539 * 359.71078 * 12 11 10
33 33 H 1.09005 * 109.40114 * 311.28960 * 17 15 13
34 34 H 1.09001 * 109.40264 * 191.55223 * 17 15 13
35 35 H 0.96994 * 119.76614 * 179.22692 * 20 18 17
36 36 H 1.08002 * 120.06202 * 0.02993 * 22 21 20
37 37 H 1.07993 * 119.94174 * 179.97438 * 25 23 22
38 38 H 1.07994 * 119.97146 * 180.02562 * 26 25 23
39 39 H 1.08004 * 125.80831 * 180.28243 * 28 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3130 0.0000 0.0000
3 14 2.2469 1.6177 0.0000
4 1 3.7070 1.3464 0.0006
5 1 1.8882 2.3964 -1.2124
6 1 1.8883 2.3964 1.2126
7 6 2.0079 -1.2037 0.0005
8 1 3.0879 -1.2036 0.0010
9 7 1.3212 -2.3929 0.0005
10 6 1.8749 -3.6405 0.0064
11 6 0.8578 -4.5384 0.0004
12 7 0.9890 -5.9383 0.0005
13 6 -0.1102 -6.7181 -0.0001
14 8 -1.2127 -6.2124 -0.0001
15 6 0.0305 -8.2185 -0.0007
16 1 0.5766 -8.5316 -0.8906
17 6 0.7955 -8.6590 1.2477
18 6 -0.0698 -8.4851 2.4668
19 8 0.4353 -8.1510 3.5177
20 7 -1.3973 -8.6964 2.4045
21 6 -2.0002 -9.0663 1.1984
22 6 -3.2606 -9.6483 1.1981
23 6 -3.8516 -10.0115 0.0013
24 9 -5.0778 -10.5785 -0.0014
25 6 -3.1863 -9.7950 -1.1943
26 6 -1.9312 -9.2155 -1.1949
27 6 -1.3369 -8.8512 -0.0025
28 6 -0.3513 -3.8199 0.0005
29 7 -0.0716 -2.5410 0.0005
30 1 -0.4850 0.8401 0.0004
31 1 2.9300 -3.8708 0.0123
32 1 1.8706 -6.3427 0.0008
33 1 1.6956 -8.0534 1.3534
34 1 1.0759 -9.7078 1.1494
35 1 -1.9396 -8.5910 3.2018
36 1 -3.7791 -9.8165 2.1305
37 1 -3.6489 -10.0795 -2.1278
38 1 -1.4149 -9.0475 -2.1284
39 1 -1.3420 -4.2500 0.0008
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000139527047.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:44
Heat of formation + Delta-G solvation = -27.598983 kcal
Electronic energy + Delta-G solvation = -29099.311467 eV
Core-core repulsion = 24729.171552 eV
Total energy + Delta-G solvation = -4370.139915 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.107 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-49.93306 -42.48887 -41.52928 -40.07000 -39.55559 -36.24042 -35.91921 -35.30201
-34.70623 -32.21935 -31.16998 -30.37828 -29.59088 -27.15508 -26.09295 -24.21688
-23.96729 -22.93519 -22.33585 -21.26865 -20.35806 -19.43646 -19.16647 -18.56699
-18.12958 -17.42867 -17.24969 -17.04942 -16.74679 -16.61045 -16.48432 -16.39361
-15.83877 -15.68506 -15.20237 -15.02186 -14.83327 -14.71543 -14.51643 -14.30664
-13.80088 -13.50076 -13.46612 -13.29135 -13.09641 -12.92107 -12.82029 -12.51178
-12.28394 -12.03110 -11.82851 -11.70339 -11.27696 -11.01383 -10.81856 -10.63257
-10.09377 -9.82345 -9.16185 -8.50899 -8.46639 -6.23527 -0.03652 0.13721
1.21532 1.38521 1.39854 1.51255 1.58716 1.86031 1.89024 2.04128
2.24730 2.52907 2.65013 2.95754 3.08808 3.09698 3.37584 3.42696
3.57836 3.74928 3.94410 4.05896 4.16006 4.38327 4.41473 4.45065
4.61748 4.63732 4.77287 4.83595 4.93807 5.01260 5.10763 5.15015
5.27964 5.30930 5.48544 5.55873 5.76376 5.97070 6.02160 6.32993
6.75082 6.76908 6.81562 7.40974 7.48677 7.70090 8.52966
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.018540 B = 0.002596 C = 0.002450
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1509.861136 B =10784.581880 C =11426.453958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.826 5.826
2 C -0.008 4.008
3 Si 1.019 2.981
4 H -0.240 1.240
5 H -0.272 1.272
6 H -0.275 1.275
7 C -0.353 4.353
8 H 0.141 0.859
9 N -0.170 5.170
10 C -0.080 4.080
11 C -0.041 4.041
12 N -0.613 5.613
13 C 0.493 3.507
14 O -0.566 6.566
15 C -0.045 4.045
16 H 0.177 0.823
17 C -0.128 4.128
18 C 0.513 3.487
19 O -0.566 6.566
20 N -0.660 5.660
21 C 0.190 3.810
22 C -0.197 4.197
23 C 0.119 3.881
24 F -0.142 7.142
25 C -0.173 4.173
26 C -0.037 4.037
27 C -0.120 4.120
28 C -0.060 4.060
29 N -0.312 5.312
30 H 0.275 0.725
31 H 0.189 0.811
32 H 0.421 0.579
33 H 0.126 0.874
34 H 0.163 0.837
35 H 0.414 0.586
36 H 0.151 0.849
37 H 0.161 0.839
38 H 0.170 0.830
39 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.231 -22.837 -3.311 23.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.454 5.454
2 C -0.219 4.219
3 Si 0.838 3.162
4 H -0.162 1.162
5 H -0.197 1.197
6 H -0.200 1.200
7 C -0.484 4.484
8 H 0.159 0.841
9 N 0.061 4.939
10 C -0.231 4.231
11 C -0.147 4.147
12 N -0.259 5.259
13 C 0.281 3.719
14 O -0.444 6.444
15 C -0.066 4.066
16 H 0.194 0.806
17 C -0.168 4.168
18 C 0.303 3.697
19 O -0.444 6.444
20 N -0.303 5.303
21 C 0.094 3.906
22 C -0.218 4.218
23 C 0.099 3.901
24 F -0.121 7.121
25 C -0.192 4.192
26 C -0.055 4.055
27 C -0.123 4.123
28 C -0.236 4.236
29 N -0.144 5.144
30 H 0.085 0.915
31 H 0.206 0.794
32 H 0.259 0.741
33 H 0.144 0.856
34 H 0.180 0.820
35 H 0.252 0.748
36 H 0.168 0.832
37 H 0.178 0.822
38 H 0.187 0.813
39 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges 1.200 -21.021 -2.843 21.246
hybrid contribution -0.244 -0.010 0.776 0.813
sum 0.956 -21.031 -2.067 21.154
Atomic orbital electron populations
1.70412 1.08441 1.28915 1.37669 1.26878 0.96467 1.04364 0.94217
0.84543 0.79117 0.74458 0.78122 1.16225 1.19712 1.20024 1.20644
0.92934 0.80895 1.53918 0.84140 1.44841 1.03581 1.04886 1.40610
1.22041 0.98923 0.84199 1.17897 1.17302 0.92527 0.83978 1.20924
1.42436 1.09942 1.02154 1.71366 1.21206 0.83748 0.90092 0.76902
1.90629 1.27529 1.75877 1.50344 1.20253 0.95067 0.88282 1.02987
0.80560 1.21930 0.97980 1.08796 0.88059 1.21411 0.82497 0.74356
0.91438 1.90787 1.73278 1.46793 1.33568 1.43615 1.08733 1.66460
1.11462 1.17361 0.92538 0.95340 0.85358 1.20718 0.96041 1.05938
0.99093 1.17532 0.80928 0.97095 0.94573 1.91500 1.40710 1.82434
1.97433 1.21355 0.96368 1.03884 0.97623 1.21013 0.93646 0.93134
0.97737 1.19150 0.97159 1.03735 0.92272 1.24123 0.99007 0.90975
1.09471 1.78142 0.92142 1.16726 1.27431 0.91526 0.79407 0.74148
0.85565 0.81991 0.74825 0.83173 0.82177 0.81281 0.81878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -48.26 11.81 21.66 0.26 -48.01 16
2 C -0.01 -0.42 5.50 84.95 0.47 0.05 16
3 Si 1.02 38.92 29.55 68.60 2.03 40.95 16
4 H -0.24 -8.14 7.11 99.48 0.71 -7.43 16
5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16
6 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16
7 C -0.35 -18.73 10.25 84.01 0.86 -17.87 16
8 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16
9 N -0.17 -9.44 3.74 -190.01 -0.71 -10.15 16
10 C -0.08 -3.65 11.49 83.37 0.96 -2.69 16
11 C -0.04 -1.83 6.90 37.73 0.26 -1.57 16
12 N -0.61 -18.92 5.27 -303.93 -1.60 -20.52 16
13 C 0.49 14.67 6.77 87.66 0.59 15.27 16
14 O -0.57 -22.83 13.19 -3.09 -0.04 -22.87 16
15 C -0.04 -0.73 2.76 -12.33 -0.03 -0.77 16
16 H 0.18 1.11 8.06 -2.39 -0.02 1.09 16
17 C -0.13 -1.88 5.49 29.75 0.16 -1.72 16
18 C 0.51 12.72 7.37 87.63 0.65 13.37 16
19 O -0.57 -18.92 17.91 -3.05 -0.05 -18.97 16
20 N -0.66 -14.98 5.36 -304.08 -1.63 -16.61 16
21 C 0.19 3.97 6.50 38.16 0.25 4.22 16
22 C -0.20 -3.79 9.90 22.43 0.22 -3.56 16
23 C 0.12 2.26 7.30 22.36 0.16 2.42 16
24 F -0.14 -2.90 17.27 44.97 0.78 -2.12 16
25 C -0.17 -2.71 10.02 22.34 0.22 -2.49 16
26 C -0.04 -0.55 9.69 22.24 0.22 -0.34 16
27 C -0.12 -2.23 4.15 -19.75 -0.08 -2.31 16
28 C -0.06 -3.29 10.85 85.42 0.93 -2.36 16
29 N -0.31 -18.97 10.40 -56.47 -0.59 -19.56 16
30 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16
31 H 0.19 6.62 8.06 -2.91 -0.02 6.60 16
32 H 0.42 8.68 8.15 -92.71 -0.76 7.92 16
33 H 0.13 1.65 7.27 -2.38 -0.02 1.64 16
34 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16
35 H 0.41 8.79 8.83 -92.71 -0.82 7.97 16
36 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16
37 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16
38 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16
39 H 0.16 9.03 5.92 -2.91 -0.02 9.01 16
Total: -1.00 -87.47 345.50 3.85 -83.62
By element:
Atomic # 1 Polarization: 35.00 SS G_CDS: -0.41 Total: 34.59 kcal
Atomic # 6 Polarization: -6.17 SS G_CDS: 5.83 Total: -0.34 kcal
Atomic # 7 Polarization: -110.58 SS G_CDS: -4.27 Total: -114.85 kcal
Atomic # 8 Polarization: -41.75 SS G_CDS: -0.10 Total: -41.84 kcal
Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal
Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal
Total: -87.47 3.85 -83.62 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000139527047.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.020 kcal
(2) G-P(sol) polarization free energy of solvation -87.473 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.619 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.599 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds