Wall clock time and date at job start Sat Apr 11 2020 07:04:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81393 * 1
3 3 O 1.42104 * 110.54595 * 2 1
4 4 O 1.42105 * 110.54538 * 223.24655 * 2 1 3
5 5 N 1.65599 * 104.44909 * 111.62276 * 2 1 3
6 6 C 1.39000 * 119.99997 * 59.47020 * 5 2 1
7 7 C 1.38925 * 120.15158 * 35.69393 * 6 5 2
8 8 C 1.37958 * 120.09498 * 179.97438 * 7 6 5
9 9 C 1.38788 * 120.39744 * 0.02562 * 8 7 6
10 10 F 1.35100 * 119.84620 * 180.02562 * 9 8 7
11 11 C 1.37936 * 120.29933 * 359.72432 * 9 8 7
12 12 C 1.39751 * 119.90076 * 0.53553 * 11 9 8
13 13 C 1.47431 * 120.19747 * 179.74451 * 12 11 9
14 14 O 1.21607 * 120.00121 * 179.72691 * 13 12 11
15 15 N 1.34780 * 119.99664 * 359.71475 * 13 12 11
16 16 C 1.46505 * 119.99716 * 180.02562 * 15 13 12
17 17 C 1.52999 * 109.46877 * 180.02562 * 16 15 13
18 18 C 1.52997 * 109.46730 * 180.02562 * 17 16 15
19 19 C 1.50701 * 109.46850 * 180.02562 * 18 17 16
20 20 H 1.08001 * 120.00393 * 0.02562 * 19 18 17
21 21 C 1.37879 * 120.00235 * 179.97438 * 19 18 17
22 22 N 1.31521 * 119.99592 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 120.00346 * 179.97438 * 21 19 18
24 24 H 1.48508 * 109.47044 * 90.00506 * 23 21 19
25 25 H 1.48500 * 109.47244 * 210.00568 * 23 21 19
26 26 H 1.48502 * 109.47351 * 330.00823 * 23 21 19
27 27 H 1.09004 * 109.47040 * 308.38036 * 1 2 3
28 28 H 1.09002 * 109.46966 * 68.37672 * 1 2 3
29 29 H 1.09004 * 109.47630 * 188.37653 * 1 2 3
30 30 H 0.96998 * 120.00582 * 239.47299 * 5 2 1
31 31 H 1.08007 * 119.94913 * 359.97438 * 7 6 5
32 32 H 1.07997 * 119.80505 * 180.02562 * 8 7 6
33 33 H 1.08000 * 120.04477 * 180.29656 * 11 9 8
34 34 H 0.96990 * 120.00274 * 0.02562 * 15 13 12
35 35 H 1.08999 * 109.47120 * 300.00389 * 16 15 13
36 36 H 1.08996 * 109.46863 * 60.00423 * 16 15 13
37 37 H 1.08999 * 109.47303 * 299.99959 * 17 16 15
38 38 H 1.09006 * 109.46807 * 60.00263 * 17 16 15
39 39 H 1.09001 * 109.47697 * 299.99986 * 18 17 16
40 40 H 1.08999 * 109.47436 * 60.00209 * 18 17 16
41 41 H 0.96998 * 119.99305 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3126 -0.9693 -0.9117
5 7 2.2271 -0.5909 1.4908
6 6 1.8084 -1.8591 1.8762
7 6 1.7320 -2.8831 0.9405
8 6 1.3168 -4.1414 1.3244
9 6 0.9721 -4.3948 2.6447
10 9 0.5674 -5.6314 3.0085
11 6 1.0468 -3.3914 3.5883
12 6 1.4606 -2.1107 3.2120
13 6 1.5375 -1.0320 4.2141
14 8 1.9027 0.0799 3.8837
15 7 1.2026 -1.2782 5.4962
16 6 1.2784 -0.2061 6.4918
17 6 0.8484 -0.7467 7.8570
18 6 0.9270 0.3730 8.8966
19 6 0.5041 -0.1596 10.2414
20 1 0.2093 -1.1935 10.3445
21 6 0.4947 0.6727 11.3407
22 7 0.8542 1.9316 11.2154
23 14 -0.0302 0.0127 13.0075
24 1 1.1570 -0.5143 13.7274
25 1 -0.6454 1.1064 13.8016
26 1 -1.0193 -1.0787 12.8187
27 1 -0.3633 0.6381 0.8056
28 1 -0.3633 0.3787 -0.9554
29 1 -0.3634 -1.0167 0.1497
30 1 2.7613 -0.0522 2.0951
31 1 1.9981 -2.6937 -0.0890
32 1 1.2595 -4.9341 0.5932
33 1 0.7822 -3.5944 4.6155
34 1 0.9114 -2.1650 5.7597
35 1 2.3028 0.1611 6.5530
36 1 0.6170 0.6092 6.1988
37 1 -0.1759 -1.1142 7.7961
38 1 1.5102 -1.5620 8.1498
39 1 1.9512 0.7410 8.9577
40 1 0.2650 1.1879 8.6037
41 1 0.8472 2.5171 11.9886
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000171594567.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:22
Heat of formation + Delta-G solvation = -129.141825 kcal
Electronic energy + Delta-G solvation = -27262.886482 eV
Core-core repulsion = 22991.494539 eV
Total energy + Delta-G solvation = -4271.391943 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.104 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.24937 -40.77405 -38.74337 -37.51663 -36.44368 -35.94280 -35.06427 -33.47668
-32.20457 -30.93005 -29.93948 -29.21448 -26.93433 -24.69094 -23.48580 -22.57893
-21.07010 -20.42961 -19.98946 -18.44245 -18.22837 -18.14754 -16.98394 -16.61415
-16.49542 -16.09203 -15.98560 -15.90168 -15.48089 -15.38443 -14.71918 -14.50020
-14.20978 -14.04498 -13.83824 -13.66918 -13.65164 -13.53321 -13.07144 -12.56224
-12.47661 -12.39824 -12.33747 -11.92993 -11.85364 -11.68508 -11.58022 -11.12420
-10.95585 -10.82114 -10.65343 -10.10669 -9.96383 -9.72828 -9.49619 -9.18939
-9.03255 -8.63281 -8.42461 -6.07113 -4.10536 -0.31579 0.26406 0.62857
2.10396 2.45775 3.04798 3.22804 3.27303 3.29836 3.34070 3.36509
3.70162 3.77002 4.17098 4.20730 4.30111 4.39854 4.43972 4.54961
4.61933 4.83237 5.14240 5.23789 5.28900 5.42988 5.44044 5.57601
5.63974 5.64627 5.78368 6.03248 6.19510 6.26568 6.47858 6.63228
6.71435 6.89822 7.42590 7.56620 7.68142 7.90909 8.06287 8.31741
8.96024 9.54104 11.04130
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.014232 B = 0.002353 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1966.979199 B =11894.515849 C =13569.011374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.668 4.668
2 S 2.606 3.394
3 O -0.943 6.943
4 O -0.953 6.953
5 N -1.039 6.039
6 C 0.207 3.793
7 C -0.161 4.161
8 C -0.095 4.095
9 C 0.076 3.924
10 F -0.134 7.134
11 C -0.096 4.096
12 C -0.132 4.132
13 C 0.557 3.443
14 O -0.537 6.537
15 N -0.714 5.714
16 C 0.115 3.885
17 C -0.122 4.122
18 C 0.024 3.976
19 C -0.524 4.524
20 H 0.055 0.945
21 C 0.057 3.943
22 N -0.893 5.893
23 Si 0.893 3.107
24 H -0.280 1.280
25 H -0.286 1.286
26 H -0.274 1.274
27 H 0.136 0.864
28 H 0.134 0.866
29 H 0.130 0.870
30 H 0.442 0.558
31 H 0.177 0.823
32 H 0.148 0.852
33 H 0.147 0.853
34 H 0.399 0.601
35 H 0.069 0.931
36 H 0.069 0.931
37 H 0.055 0.945
38 H 0.055 0.945
39 H 0.019 0.981
40 H 0.019 0.981
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.420 -11.576 -24.984 27.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.819 4.819
2 S 2.699 3.301
3 O -0.933 6.933
4 O -0.943 6.943
5 N -0.793 5.793
6 C 0.106 3.894
7 C -0.183 4.183
8 C -0.115 4.115
9 C 0.055 3.945
10 F -0.113 7.113
11 C -0.116 4.116
12 C -0.140 4.140
13 C 0.343 3.657
14 O -0.417 6.417
15 N -0.364 5.364
16 C -0.008 4.008
17 C -0.160 4.160
18 C -0.013 4.013
19 C -0.562 4.562
20 H 0.074 0.926
21 C -0.144 4.144
22 N -0.532 5.532
23 Si 0.721 3.279
24 H -0.206 1.206
25 H -0.212 1.212
26 H -0.199 1.199
27 H 0.155 0.845
28 H 0.153 0.847
29 H 0.149 0.851
30 H 0.288 0.712
31 H 0.194 0.806
32 H 0.166 0.834
33 H 0.164 0.836
34 H 0.234 0.766
35 H 0.087 0.913
36 H 0.087 0.913
37 H 0.074 0.926
38 H 0.074 0.926
39 H 0.038 0.962
40 H 0.038 0.962
41 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -0.609 -10.333 -25.863 27.857
hybrid contribution -0.943 -0.893 1.949 2.343
sum -1.552 -11.225 -23.914 26.463
Atomic orbital electron populations
1.30458 1.26965 1.12213 1.12260 1.05176 0.78071 0.74099 0.72711
1.93662 1.77979 1.36749 1.84917 1.93547 1.77422 1.61148 1.62148
1.53586 1.64230 1.22662 1.38783 1.17388 0.94557 0.85026 0.92419
1.21892 1.02857 0.91149 1.02359 1.21210 0.97777 0.97881 0.94628
1.17482 1.02889 0.80661 0.93452 1.91543 1.88206 1.39295 1.92256
1.21242 0.98900 0.91194 1.00277 1.19788 1.05907 0.94354 0.93935
1.17910 0.78068 0.87271 0.82427 1.90649 1.47760 1.23515 1.79733
1.46155 1.66782 1.15290 1.08187 1.21763 1.02220 0.89095 0.87673
1.21913 1.00238 1.01204 0.92658 1.19023 0.97682 0.92602 0.92017
1.21187 1.45170 0.96556 0.93319 0.92633 1.25031 0.95331 0.94868
0.99207 1.69964 1.47939 1.04834 1.30476 0.86577 0.78797 0.78555
0.83954 1.20627 1.21180 1.19887 0.84521 0.84729 0.85111 0.71221
0.80559 0.83395 0.83576 0.76554 0.91257 0.91292 0.92621 0.92595
0.96229 0.96236 0.92869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.67 -3.46 10.69 101.05 1.08 -2.38 16
2 S 2.61 22.20 5.86 -107.50 -0.63 21.57 16
3 O -0.94 -11.71 18.08 -57.54 -1.04 -12.75 16
4 O -0.95 -9.42 15.08 -57.54 -0.87 -10.29 16
5 N -1.04 -10.10 4.96 32.56 0.16 -9.94 16
6 C 0.21 1.93 6.11 -83.58 -0.51 1.42 16
7 C -0.16 -1.23 9.24 -39.43 -0.36 -1.60 16
8 C -0.10 -0.64 10.00 -39.48 -0.39 -1.04 16
9 C 0.08 0.60 7.28 -39.49 -0.29 0.31 16
10 F -0.13 -1.17 17.26 2.25 0.04 -1.13 16
11 C -0.10 -0.79 9.51 -39.13 -0.37 -1.16 16
12 C -0.13 -1.32 5.89 -104.81 -0.62 -1.94 16
13 C 0.56 7.11 7.76 -12.51 -0.10 7.01 16
14 O -0.54 -8.24 13.92 5.27 0.07 -8.17 16
15 N -0.71 -8.93 5.51 -61.38 -0.34 -9.26 16
16 C 0.11 1.82 5.67 -4.04 -0.02 1.80 16
17 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16
18 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16
19 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16
20 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16
21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
22 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16
23 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16
24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
26 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16
27 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16
28 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16
29 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16
30 H 0.44 4.90 6.54 -34.47 -0.23 4.67 16
31 H 0.18 1.28 5.19 -52.48 -0.27 1.01 16
32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16
33 H 0.15 0.97 6.40 -52.49 -0.34 0.63 16
34 H 0.40 3.93 6.50 -40.82 -0.27 3.67 16
35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
LS Contribution 363.79 15.07 5.48 5.48
Total: -1.00 -35.04 363.79 -8.55 -43.59
By element:
Atomic # 1 Polarization: 7.80 SS G_CDS: -4.87 Total: 2.93 kcal
Atomic # 6 Polarization: -10.24 SS G_CDS: -2.28 Total: -12.52 kcal
Atomic # 7 Polarization: -45.34 SS G_CDS: 0.56 Total: -44.78 kcal
Atomic # 8 Polarization: -29.38 SS G_CDS: -1.83 Total: -31.21 kcal
Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 16 Polarization: 22.20 SS G_CDS: -0.63 Total: 21.57 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -35.04 -8.55 -43.59 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171594567.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.549 kcal
(2) G-P(sol) polarization free energy of solvation -35.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.142 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds