Wall clock time and date at job start Sat Apr 11 2020 07:04:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81393 * 1
3 3 O 1.42104 * 110.54595 * 2 1
4 4 O 1.42105 * 110.54538 * 223.24655 * 2 1 3
5 5 N 1.65599 * 104.44909 * 111.62276 * 2 1 3
6 6 C 1.39000 * 119.99997 * 59.47020 * 5 2 1
7 7 C 1.38925 * 120.15158 * 35.69393 * 6 5 2
8 8 C 1.37958 * 120.09498 * 179.97438 * 7 6 5
9 9 C 1.38788 * 120.39744 * 0.02562 * 8 7 6
10 10 F 1.35100 * 119.84620 * 180.02562 * 9 8 7
11 11 C 1.37936 * 120.29933 * 359.72432 * 9 8 7
12 12 C 1.39751 * 119.90076 * 0.53553 * 11 9 8
13 13 C 1.47431 * 120.19747 * 179.74451 * 12 11 9
14 14 O 1.21607 * 120.00121 * 179.72691 * 13 12 11
15 15 N 1.34780 * 119.99664 * 359.71475 * 13 12 11
16 16 C 1.46505 * 119.99716 * 180.02562 * 15 13 12
17 17 C 1.52999 * 109.46877 * 180.02562 * 16 15 13
18 18 C 1.52997 * 109.46730 * 180.02562 * 17 16 15
19 19 C 1.50701 * 109.46850 * 180.02562 * 18 17 16
20 20 H 1.08001 * 120.00393 * 0.02562 * 19 18 17
21 21 C 1.37879 * 120.00235 * 179.97438 * 19 18 17
22 22 N 1.31521 * 119.99592 * 0.02562 * 21 19 18
23 23 Si 1.86795 * 120.00346 * 179.97438 * 21 19 18
24 24 H 1.48508 * 109.47044 * 90.00506 * 23 21 19
25 25 H 1.48500 * 109.47244 * 210.00568 * 23 21 19
26 26 H 1.48502 * 109.47351 * 330.00823 * 23 21 19
27 27 H 1.09004 * 109.47040 * 308.38036 * 1 2 3
28 28 H 1.09002 * 109.46966 * 68.37672 * 1 2 3
29 29 H 1.09004 * 109.47630 * 188.37653 * 1 2 3
30 30 H 0.96998 * 120.00582 * 239.47299 * 5 2 1
31 31 H 1.08007 * 119.94913 * 359.97438 * 7 6 5
32 32 H 1.07997 * 119.80505 * 180.02562 * 8 7 6
33 33 H 1.08000 * 120.04477 * 180.29656 * 11 9 8
34 34 H 0.96990 * 120.00274 * 0.02562 * 15 13 12
35 35 H 1.08999 * 109.47120 * 300.00389 * 16 15 13
36 36 H 1.08996 * 109.46863 * 60.00423 * 16 15 13
37 37 H 1.08999 * 109.47303 * 299.99959 * 17 16 15
38 38 H 1.09006 * 109.46807 * 60.00263 * 17 16 15
39 39 H 1.09001 * 109.47697 * 299.99986 * 18 17 16
40 40 H 1.08999 * 109.47436 * 60.00209 * 18 17 16
41 41 H 0.96998 * 119.99305 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3126 -0.9693 -0.9117
5 7 2.2271 -0.5909 1.4908
6 6 1.8084 -1.8591 1.8762
7 6 1.7320 -2.8831 0.9405
8 6 1.3168 -4.1414 1.3244
9 6 0.9721 -4.3948 2.6447
10 9 0.5674 -5.6314 3.0085
11 6 1.0468 -3.3914 3.5883
12 6 1.4606 -2.1107 3.2120
13 6 1.5375 -1.0320 4.2141
14 8 1.9027 0.0799 3.8837
15 7 1.2026 -1.2782 5.4962
16 6 1.2784 -0.2061 6.4918
17 6 0.8484 -0.7467 7.8570
18 6 0.9270 0.3730 8.8966
19 6 0.5041 -0.1596 10.2414
20 1 0.2093 -1.1935 10.3445
21 6 0.4947 0.6727 11.3407
22 7 0.8542 1.9316 11.2154
23 14 -0.0302 0.0127 13.0075
24 1 1.1570 -0.5143 13.7274
25 1 -0.6454 1.1064 13.8016
26 1 -1.0193 -1.0787 12.8187
27 1 -0.3633 0.6381 0.8056
28 1 -0.3633 0.3787 -0.9554
29 1 -0.3634 -1.0167 0.1497
30 1 2.7613 -0.0522 2.0951
31 1 1.9981 -2.6937 -0.0890
32 1 1.2595 -4.9341 0.5932
33 1 0.7822 -3.5944 4.6155
34 1 0.9114 -2.1650 5.7597
35 1 2.3028 0.1611 6.5530
36 1 0.6170 0.6092 6.1988
37 1 -0.1759 -1.1142 7.7961
38 1 1.5102 -1.5620 8.1498
39 1 1.9512 0.7410 8.9577
40 1 0.2650 1.1879 8.6037
41 1 0.8472 2.5171 11.9886
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000171594567.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:21
Heat of formation + Delta-G solvation = -155.113548 kcal
Electronic energy + Delta-G solvation = -27264.012700 eV
Core-core repulsion = 22991.494539 eV
Total energy + Delta-G solvation = -4272.518162 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.104 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-49.87899 -41.61713 -39.62962 -38.28692 -37.21358 -37.11147 -36.04079 -35.12706
-33.43762 -32.18840 -30.41148 -29.90802 -28.58424 -25.77493 -24.67559 -23.54266
-22.35959 -21.70549 -20.67918 -19.29610 -18.93934 -18.84853 -18.49448 -17.70948
-17.36685 -16.87139 -16.79324 -16.62041 -16.58782 -16.52195 -16.30576 -15.45148
-15.44194 -14.78946 -14.63102 -14.45937 -14.21781 -14.15355 -14.07037 -13.81552
-13.74713 -13.47106 -13.35633 -13.19220 -13.10500 -12.75542 -12.56490 -12.40103
-12.33155 -12.24214 -11.80206 -11.67679 -11.55721 -11.23991 -10.90493 -10.55176
-10.42951 -10.11805 -9.31859 -8.19666 -6.30792 -0.94894 -0.41729 -0.00863
1.42135 1.42911 1.43596 1.53832 1.63789 2.03345 2.42279 2.47353
2.65004 3.06600 3.11272 3.14540 3.52995 3.58830 3.68588 3.95716
4.00647 4.08022 4.13766 4.20856 4.22182 4.49782 4.55959 4.81437
4.85132 4.88131 4.94065 4.94778 5.03005 5.14615 5.17808 5.34386
5.52410 5.61320 5.71462 5.84801 5.87920 6.22310 6.44208 6.87166
7.08713 7.38992 8.92348
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.014232 B = 0.002353 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1966.979199 B =11894.515849 C =13569.011374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.650 4.650
2 S 2.609 3.391
3 O -0.990 6.990
4 O -0.970 6.970
5 N -1.047 6.047
6 C 0.203 3.797
7 C -0.161 4.161
8 C -0.076 4.076
9 C 0.070 3.930
10 F -0.137 7.137
11 C -0.088 4.088
12 C -0.146 4.146
13 C 0.556 3.444
14 O -0.569 6.569
15 N -0.706 5.706
16 C 0.129 3.871
17 C -0.104 4.104
18 C 0.024 3.976
19 C -0.540 4.540
20 H 0.067 0.933
21 C -0.003 4.003
22 N -0.935 5.935
23 Si 0.965 3.035
24 H -0.274 1.274
25 H -0.286 1.286
26 H -0.260 1.260
27 H 0.140 0.860
28 H 0.161 0.839
29 H 0.152 0.848
30 H 0.435 0.565
31 H 0.183 0.817
32 H 0.178 0.822
33 H 0.161 0.839
34 H 0.414 0.586
35 H 0.054 0.946
36 H 0.057 0.943
37 H 0.069 0.931
38 H 0.068 0.932
39 H -0.008 1.008
40 H -0.007 1.007
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.920 -14.436 -25.669 29.594
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.804 4.804
2 S 2.707 3.293
3 O -0.980 6.980
4 O -0.960 6.960
5 N -0.798 5.798
6 C 0.102 3.898
7 C -0.182 4.182
8 C -0.095 4.095
9 C 0.050 3.950
10 F -0.116 7.116
11 C -0.108 4.108
12 C -0.154 4.154
13 C 0.344 3.656
14 O -0.450 6.450
15 N -0.358 5.358
16 C 0.006 3.994
17 C -0.142 4.142
18 C -0.014 4.014
19 C -0.578 4.578
20 H 0.085 0.915
21 C -0.201 4.201
22 N -0.575 5.575
23 Si 0.790 3.210
24 H -0.199 1.199
25 H -0.211 1.211
26 H -0.184 1.184
27 H 0.158 0.842
28 H 0.179 0.821
29 H 0.170 0.830
30 H 0.278 0.722
31 H 0.200 0.800
32 H 0.195 0.805
33 H 0.179 0.821
34 H 0.252 0.748
35 H 0.073 0.927
36 H 0.075 0.925
37 H 0.088 0.912
38 H 0.086 0.914
39 H 0.010 0.990
40 H 0.012 0.988
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -2.086 -13.248 -26.563 29.757
hybrid contribution -0.503 -0.037 2.083 2.143
sum -2.589 -13.285 -24.480 27.973
Atomic orbital electron populations
1.30309 1.22104 1.13976 1.14025 1.04928 0.79695 0.72712 0.71953
1.93602 1.80076 1.38913 1.85433 1.93513 1.79022 1.61024 1.62471
1.53603 1.64551 1.23054 1.38628 1.17591 0.94466 0.85153 0.92608
1.21946 1.03008 0.91022 1.02193 1.21512 0.95305 0.98015 0.94702
1.17534 1.03238 0.80411 0.93836 1.91543 1.88297 1.39414 1.92338
1.21343 0.97835 0.90427 1.01232 1.19484 1.08390 0.94144 0.93366
1.18321 0.77061 0.87600 0.82593 1.90644 1.49045 1.25076 1.80240
1.45883 1.67066 1.15141 1.07667 1.21309 1.00948 0.89673 0.87514
1.21613 1.01502 0.99111 0.91934 1.18936 0.95179 0.93898 0.93390
1.21693 1.44575 0.97109 0.94467 0.91527 1.26006 0.95408 0.95071
1.03592 1.70110 1.49399 1.06343 1.31688 0.85444 0.78714 0.78100
0.78761 1.19919 1.21136 1.18380 0.84178 0.82064 0.82968 0.72212
0.80030 0.80492 0.82119 0.74783 0.92720 0.92489 0.91211 0.91356
0.98975 0.98832 0.92846
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.65 -5.22 10.69 113.37 1.21 -4.01 16
2 S 2.61 43.75 5.86 -56.49 -0.33 43.42 16
3 O -0.99 -25.61 18.08 -127.65 -2.31 -27.91 16
4 O -0.97 -18.53 15.08 -127.65 -1.92 -20.45 16
5 N -1.05 -20.40 4.96 -50.91 -0.25 -20.66 16
6 C 0.20 3.52 6.11 38.67 0.24 3.76 16
7 C -0.16 -2.08 9.24 22.37 0.21 -1.87 16
8 C -0.08 -0.77 10.00 22.33 0.22 -0.54 16
9 C 0.07 0.91 7.28 22.33 0.16 1.07 16
10 F -0.14 -1.99 17.26 44.97 0.78 -1.21 16
11 C -0.09 -1.25 9.51 22.56 0.21 -1.03 16
12 C -0.15 -2.72 5.89 -19.99 -0.12 -2.84 16
13 C 0.56 13.99 7.76 86.66 0.67 14.67 16
14 O -0.57 -17.90 13.92 -4.05 -0.06 -17.95 16
15 N -0.71 -17.05 5.51 -466.36 -2.57 -19.62 16
16 C 0.13 4.14 5.67 86.38 0.49 4.63 16
17 C -0.10 -3.72 5.27 30.59 0.16 -3.56 16
18 C 0.02 1.19 4.97 29.85 0.15 1.33 16
19 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16
20 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16
21 C 0.00 -0.17 5.46 84.65 0.46 0.29 16
22 N -0.94 -56.35 13.29 21.45 0.28 -56.06 16
23 Si 0.97 43.08 29.54 68.60 2.03 45.10 16
24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
25 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16
26 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16
27 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16
28 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16
29 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.43 10.14 6.54 -96.74 -0.63 9.51 16
31 H 0.18 2.24 5.19 -2.91 -0.02 2.22 16
32 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16
33 H 0.16 1.69 6.40 -2.91 -0.02 1.67 16
34 H 0.41 7.35 6.50 -92.72 -0.60 6.75 16
35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
38 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16
39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16
40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16
Total: -1.00 -77.46 363.79 -0.19 -77.65
By element:
Atomic # 1 Polarization: 15.12 SS G_CDS: -0.14 Total: 14.98 kcal
Atomic # 6 Polarization: -21.59 SS G_CDS: 4.31 Total: -17.28 kcal
Atomic # 7 Polarization: -93.80 SS G_CDS: -2.54 Total: -96.34 kcal
Atomic # 8 Polarization: -62.03 SS G_CDS: -4.29 Total: -66.32 kcal
Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal
Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal
Atomic # 16 Polarization: 43.75 SS G_CDS: -0.33 Total: 43.42 kcal
Total: -77.46 -0.19 -77.65 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171594567.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.463 kcal
(2) G-P(sol) polarization free energy of solvation -77.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -155.114 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds