Wall clock time and date at job start Sat Apr 11 2020 07:04:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86792 * 119.99971 * 2 1
4 4 H 1.48499 * 109.47594 * 275.30111 * 3 2 1
5 5 H 1.48499 * 109.47373 * 35.30191 * 3 2 1
6 6 H 1.48501 * 109.47335 * 155.30158 * 3 2 1
7 7 C 1.38811 * 119.99709 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00681 * 36.97776 * 7 2 1
9 9 N 1.36939 * 119.99864 * 216.97707 * 7 2 1
10 10 C 1.46960 * 120.59655 * 206.36354 * 9 7 2
11 11 C 1.53367 * 108.63580 * 235.24870 * 10 9 7
12 12 N 1.46963 * 108.63643 * 310.57535 * 11 10 9
13 13 C 1.34781 * 120.59437 * 235.20149 * 12 11 10
14 14 O 1.21554 * 120.00158 * 5.13250 * 13 12 11
15 15 C 1.47851 * 120.00002 * 185.12592 * 13 12 11
16 16 C 1.39535 * 120.11929 * 53.42455 * 15 13 12
17 17 C 1.38456 * 119.79503 * 180.27867 * 16 15 13
18 18 O 1.35906 * 119.98280 * 179.75123 * 17 16 15
19 19 C 1.38851 * 120.03147 * 359.76616 * 17 16 15
20 20 C 1.38252 * 120.23580 * 0.02562 * 19 17 16
21 21 C 1.38001 * 120.20968 * 359.97372 * 20 19 17
22 22 C 1.50701 * 120.01862 * 180.02562 * 21 20 19
23 23 F 1.39903 * 109.46707 * 0.02562 * 22 21 20
24 24 F 1.39900 * 109.47264 * 240.00452 * 22 21 20
25 25 F 1.39901 * 109.46864 * 119.99955 * 22 21 20
26 26 C 1.46963 * 118.80915 * 55.48069 * 12 11 10
27 27 C 1.46963 * 120.59324 * 26.38787 * 9 7 2
28 28 H 0.96999 * 120.00162 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.61254 * 115.50328 * 10 9 7
30 30 H 1.08995 * 109.74956 * 355.07835 * 10 9 7
31 31 H 1.09008 * 109.61053 * 190.83152 * 11 10 9
32 32 H 1.09005 * 109.61128 * 70.32186 * 11 10 9
33 33 H 1.07998 * 120.10091 * 0.02562 * 16 15 13
34 34 H 0.96705 * 113.99454 * 270.01703 * 18 17 16
35 35 H 1.07989 * 119.88372 * 179.97438 * 19 17 16
36 36 H 1.08004 * 119.89203 * 179.97438 * 20 19 17
37 37 H 1.08996 * 109.61122 * 64.26616 * 26 12 11
38 38 H 1.09007 * 109.60260 * 184.77913 * 26 12 11
39 39 H 1.08998 * 109.61323 * 244.49985 * 27 9 7
40 40 H 1.09004 * 109.61292 * 5.00765 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3857 2.1111 -1.3940
5 1 1.5082 2.6177 0.8091
6 1 3.5993 1.4104 0.5850
7 6 2.0102 -1.2022 -0.0005
8 1 1.6332 -2.0432 -0.5635
9 7 3.1730 -1.3218 0.7127
10 6 4.1995 -2.2943 0.3123
11 6 4.5057 -3.2041 1.5084
12 7 4.7493 -2.3626 2.6884
13 6 5.8934 -2.4810 3.3910
14 8 6.7740 -3.2211 2.9983
15 6 6.0773 -1.7104 4.6394
16 6 5.1241 -1.7857 5.6556
17 6 5.3002 -1.0568 6.8195
18 8 4.3717 -1.1234 7.8097
19 6 6.4249 -0.2576 6.9754
20 6 7.3723 -0.1854 5.9711
21 6 7.2067 -0.9078 4.8070
22 6 8.2424 -0.8263 3.7154
23 9 9.2697 0.0371 4.1108
24 9 7.6492 -0.3407 2.5450
25 9 8.7700 -2.0999 3.4772
26 6 3.7203 -1.3941 3.0921
27 6 3.4166 -0.4803 1.8927
28 1 -0.4850 0.8400 -0.0004
29 1 5.1053 -1.7675 0.0121
30 1 3.8330 -2.8951 -0.5199
31 1 5.3923 -3.8017 1.2960
32 1 3.6557 -3.8602 1.6961
33 1 4.2496 -2.4075 5.5330
34 1 3.6697 -0.4625 7.7355
35 1 6.5597 0.3102 7.8840
36 1 8.2448 0.4384 6.0981
37 1 2.8157 -1.9242 3.3899
38 1 4.0882 -0.7959 3.9259
39 1 4.2666 0.1758 1.7051
40 1 2.5301 0.1173 2.1053
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000189071076.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:55
Heat of formation + Delta-G solvation = -149.348186 kcal
Electronic energy + Delta-G solvation = -31908.198759 eV
Core-core repulsion = 27082.090215 eV
Total energy + Delta-G solvation = -4826.108543 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-50.09667 -47.67863 -47.43640 -40.79835 -39.33598 -37.39063 -36.82909 -34.11858
-32.27451 -31.37106 -31.29094 -30.53858 -27.42962 -25.92035 -24.55359 -23.44856
-23.19169 -22.33533 -21.05021 -19.60392 -18.56166 -18.50769 -18.37216 -18.23238
-17.21281 -16.42035 -16.17967 -15.89996 -15.49554 -15.14927 -14.83699 -14.60739
-14.45206 -14.33263 -14.31283 -13.98312 -13.85419 -13.74477 -13.64012 -13.57166
-13.47446 -13.06314 -12.80592 -12.73914 -12.40949 -12.22127 -11.95265 -11.83927
-11.24470 -11.13745 -10.87276 -10.52990 -10.45711 -10.25134 -9.84912 -9.55524
-9.39265 -9.33445 -8.82685 -8.32651 -7.09577 -6.15963 -3.35160 0.31713
0.62770 2.49661 2.58482 2.88238 3.16807 3.30919 3.43876 3.50460
3.57837 3.73828 3.92528 4.27820 4.42432 4.43860 4.46271 4.65512
4.77445 4.90181 5.01186 5.15900 5.32415 5.44461 5.48225 5.52495
5.64661 5.73243 5.79107 5.80616 5.96091 6.01179 6.07368 6.14583
6.42618 6.52926 6.69374 6.77648 7.14918 7.52407 7.80755 8.14834
8.18307 8.81435 9.60183 9.99869 10.98229
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.012017 B = 0.004422 C = 0.004040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2329.471799 B = 6330.652712 C = 6928.517099
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.878 5.878
2 C 0.041 3.959
3 Si 0.831 3.169
4 H -0.291 1.291
5 H -0.294 1.294
6 H -0.257 1.257
7 C -0.275 4.275
8 H 0.084 0.916
9 N -0.598 5.598
10 C 0.132 3.868
11 C 0.096 3.904
12 N -0.584 5.584
13 C 0.540 3.460
14 O -0.524 6.524
15 C -0.048 4.048
16 C -0.117 4.117
17 C 0.138 3.862
18 O -0.493 6.493
19 C -0.134 4.134
20 C -0.059 4.059
21 C -0.156 4.156
22 C 0.504 3.496
23 F -0.182 7.182
24 F -0.171 7.171
25 F -0.154 7.154
26 C 0.081 3.919
27 C 0.133 3.867
28 H 0.263 0.737
29 H 0.028 0.972
30 H 0.077 0.923
31 H 0.088 0.912
32 H 0.072 0.928
33 H 0.148 0.852
34 H 0.400 0.600
35 H 0.145 0.855
36 H 0.149 0.851
37 H 0.077 0.923
38 H 0.073 0.927
39 H 0.035 0.965
40 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.066 0.185 15.386 19.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.517 5.517
2 C -0.161 4.161
3 Si 0.658 3.342
4 H -0.219 1.219
5 H -0.220 1.220
6 H -0.181 1.181
7 C -0.402 4.402
8 H 0.101 0.899
9 N -0.322 5.322
10 C 0.005 3.995
11 C -0.027 4.027
12 N -0.315 5.315
13 C 0.326 3.674
14 O -0.401 6.401
15 C -0.051 4.051
16 C -0.136 4.136
17 C 0.093 3.907
18 O -0.305 6.305
19 C -0.152 4.152
20 C -0.077 4.077
21 C -0.158 4.158
22 C 0.450 3.550
23 F -0.163 7.163
24 F -0.153 7.153
25 F -0.135 7.135
26 C -0.044 4.044
27 C 0.006 3.994
28 H 0.073 0.927
29 H 0.046 0.954
30 H 0.095 0.905
31 H 0.106 0.894
32 H 0.090 0.910
33 H 0.166 0.834
34 H 0.258 0.742
35 H 0.163 0.837
36 H 0.166 0.834
37 H 0.095 0.905
38 H 0.092 0.908
39 H 0.053 0.947
40 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 12.679 -0.606 15.282 19.866
hybrid contribution 0.127 1.593 -0.380 1.643
sum 12.806 0.987 14.901 19.673
Atomic orbital electron populations
1.70114 1.06187 1.26970 1.48449 1.25196 0.94777 0.97381 0.98730
0.87660 0.82183 0.86091 0.78250 1.21870 1.22027 1.18144 1.18775
0.96106 0.96932 1.28414 0.89857 1.44287 1.17975 1.42456 1.27451
1.21344 0.92086 0.91737 0.94296 1.22310 1.01521 0.93434 0.85456
1.47944 1.17028 1.38257 1.28305 1.18227 0.82922 0.82826 0.83411
1.90858 1.40778 1.39292 1.69205 1.19639 0.93515 0.96224 0.95771
1.21609 0.99468 1.00722 0.91772 1.18441 0.90501 0.94816 0.86936
1.84816 1.39038 1.59982 1.46641 1.21539 0.94389 0.99467 0.99845
1.20858 0.99329 0.96664 0.90898 1.20023 0.96003 1.03368 0.96385
1.18167 0.80556 0.74640 0.81630 1.93145 1.61601 1.70873 1.90703
1.93267 1.83513 1.88025 1.50463 1.93333 1.87127 1.38301 1.94712
1.22794 0.90662 0.91760 0.99138 1.21780 0.99699 0.92156 0.85787
0.92682 0.95365 0.90486 0.89372 0.90987 0.83393 0.74190 0.83746
0.83376 0.90469 0.90833 0.94749 0.90348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.24 13.97 55.49 0.78 -24.46 16
2 C 0.04 1.11 4.81 -17.43 -0.08 1.02 16
3 Si 0.83 20.28 26.46 -169.99 -4.50 15.78 16
4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
6 H -0.26 -6.01 4.96 56.52 0.28 -5.73 16
7 C -0.28 -7.22 9.85 -15.06 -0.15 -7.37 16
8 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16
9 N -0.60 -13.43 2.71 -171.77 -0.47 -13.90 16
10 C 0.13 2.54 6.67 -3.60 -0.02 2.52 16
11 C 0.10 1.63 6.60 -3.60 -0.02 1.60 16
12 N -0.58 -9.78 2.94 -173.32 -0.51 -10.29 16
13 C 0.54 9.05 6.00 -12.32 -0.07 8.97 16
14 O -0.52 -10.08 13.64 5.32 0.07 -10.01 16
15 C -0.05 -0.66 4.64 -104.99 -0.49 -1.15 16
16 C -0.12 -1.30 7.62 -39.02 -0.30 -1.60 16
17 C 0.14 1.27 6.70 -39.27 -0.26 1.01 16
18 O -0.49 -3.78 13.50 -19.45 -0.26 -4.04 16
19 C -0.13 -1.10 9.98 -39.35 -0.39 -1.49 16
20 C -0.06 -0.57 9.41 -39.66 -0.37 -0.94 16
21 C -0.16 -2.02 5.40 -104.21 -0.56 -2.58 16
22 C 0.50 7.38 2.85 36.01 0.10 7.48 16
23 F -0.18 -2.30 15.97 2.25 0.04 -2.27 16
24 F -0.17 -2.86 16.50 2.25 0.04 -2.82 16
25 F -0.15 -2.55 14.58 2.25 0.03 -2.52 16
26 C 0.08 1.30 5.76 -3.37 -0.02 1.28 16
27 C 0.13 2.68 4.56 -3.37 -0.02 2.67 16
28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16
31 H 0.09 1.46 6.99 -51.92 -0.36 1.10 16
32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16
33 H 0.15 1.54 7.69 -52.49 -0.40 1.14 16
34 H 0.40 1.21 9.06 45.56 0.41 1.62 16
35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16
36 H 0.15 1.09 7.15 -52.48 -0.38 0.72 16
37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16
38 H 0.07 0.99 5.22 -51.93 -0.27 0.72 16
39 H 0.03 0.73 6.77 -51.93 -0.35 0.38 16
40 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16
LS Contribution 335.53 15.07 5.06 5.06
Total: -1.00 -32.81 335.53 -5.81 -38.62
By element:
Atomic # 1 Polarization: 2.85 SS G_CDS: -3.42 Total: -0.57 kcal
Atomic # 6 Polarization: 14.08 SS G_CDS: -2.66 Total: 11.42 kcal
Atomic # 7 Polarization: -48.45 SS G_CDS: -0.20 Total: -48.65 kcal
Atomic # 8 Polarization: -13.86 SS G_CDS: -0.19 Total: -14.05 kcal
Atomic # 9 Polarization: -7.71 SS G_CDS: 0.11 Total: -7.61 kcal
Atomic # 14 Polarization: 20.28 SS G_CDS: -4.50 Total: 15.78 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -32.81 -5.81 -38.62 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000189071076.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.724 kcal
(2) G-P(sol) polarization free energy of solvation -32.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.538 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.348 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds