Wall clock time and date at job start Sat Apr 11 2020 07:04:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86792 * 119.99971 * 2 1
4 4 H 1.48499 * 109.47594 * 275.30111 * 3 2 1
5 5 H 1.48499 * 109.47373 * 35.30191 * 3 2 1
6 6 H 1.48501 * 109.47335 * 155.30158 * 3 2 1
7 7 C 1.38811 * 119.99709 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00681 * 36.97776 * 7 2 1
9 9 N 1.36939 * 119.99864 * 216.97707 * 7 2 1
10 10 C 1.46960 * 120.59655 * 206.36354 * 9 7 2
11 11 C 1.53367 * 108.63580 * 235.24870 * 10 9 7
12 12 N 1.46963 * 108.63643 * 310.57535 * 11 10 9
13 13 C 1.34781 * 120.59437 * 235.20149 * 12 11 10
14 14 O 1.21554 * 120.00158 * 5.13250 * 13 12 11
15 15 C 1.47851 * 120.00002 * 185.12592 * 13 12 11
16 16 C 1.39535 * 120.11929 * 53.42455 * 15 13 12
17 17 C 1.38456 * 119.79503 * 180.27867 * 16 15 13
18 18 O 1.35906 * 119.98280 * 179.75123 * 17 16 15
19 19 C 1.38851 * 120.03147 * 359.76616 * 17 16 15
20 20 C 1.38252 * 120.23580 * 0.02562 * 19 17 16
21 21 C 1.38001 * 120.20968 * 359.97372 * 20 19 17
22 22 C 1.50701 * 120.01862 * 180.02562 * 21 20 19
23 23 F 1.39903 * 109.46707 * 0.02562 * 22 21 20
24 24 F 1.39900 * 109.47264 * 240.00452 * 22 21 20
25 25 F 1.39901 * 109.46864 * 119.99955 * 22 21 20
26 26 C 1.46963 * 118.80915 * 55.48069 * 12 11 10
27 27 C 1.46963 * 120.59324 * 26.38787 * 9 7 2
28 28 H 0.96999 * 120.00162 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.61254 * 115.50328 * 10 9 7
30 30 H 1.08995 * 109.74956 * 355.07835 * 10 9 7
31 31 H 1.09008 * 109.61053 * 190.83152 * 11 10 9
32 32 H 1.09005 * 109.61128 * 70.32186 * 11 10 9
33 33 H 1.07998 * 120.10091 * 0.02562 * 16 15 13
34 34 H 0.96705 * 113.99454 * 270.01703 * 18 17 16
35 35 H 1.07989 * 119.88372 * 179.97438 * 19 17 16
36 36 H 1.08004 * 119.89203 * 179.97438 * 20 19 17
37 37 H 1.08996 * 109.61122 * 64.26616 * 26 12 11
38 38 H 1.09007 * 109.60260 * 184.77913 * 26 12 11
39 39 H 1.08998 * 109.61323 * 244.49985 * 27 9 7
40 40 H 1.09004 * 109.61292 * 5.00765 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3857 2.1111 -1.3940
5 1 1.5082 2.6177 0.8091
6 1 3.5993 1.4104 0.5850
7 6 2.0102 -1.2022 -0.0005
8 1 1.6332 -2.0432 -0.5635
9 7 3.1730 -1.3218 0.7127
10 6 4.1995 -2.2943 0.3123
11 6 4.5057 -3.2041 1.5084
12 7 4.7493 -2.3626 2.6884
13 6 5.8934 -2.4810 3.3910
14 8 6.7740 -3.2211 2.9983
15 6 6.0773 -1.7104 4.6394
16 6 5.1241 -1.7857 5.6556
17 6 5.3002 -1.0568 6.8195
18 8 4.3717 -1.1234 7.8097
19 6 6.4249 -0.2576 6.9754
20 6 7.3723 -0.1854 5.9711
21 6 7.2067 -0.9078 4.8070
22 6 8.2424 -0.8263 3.7154
23 9 9.2697 0.0371 4.1108
24 9 7.6492 -0.3407 2.5450
25 9 8.7700 -2.0999 3.4772
26 6 3.7203 -1.3941 3.0921
27 6 3.4166 -0.4803 1.8927
28 1 -0.4850 0.8400 -0.0004
29 1 5.1053 -1.7675 0.0121
30 1 3.8330 -2.8951 -0.5199
31 1 5.3923 -3.8017 1.2960
32 1 3.6557 -3.8602 1.6961
33 1 4.2496 -2.4075 5.5330
34 1 3.6697 -0.4625 7.7355
35 1 6.5597 0.3102 7.8840
36 1 8.2448 0.4384 6.0981
37 1 2.8157 -1.9242 3.3899
38 1 4.0882 -0.7959 3.9259
39 1 4.2666 0.1758 1.7051
40 1 2.5301 0.1173 2.1053
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000189071076.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:55
Heat of formation + Delta-G solvation = -172.318473 kcal
Electronic energy + Delta-G solvation = -31909.194825 eV
Core-core repulsion = 27082.090215 eV
Total energy + Delta-G solvation = -4827.104610 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-51.21908 -48.78147 -48.62299 -41.83236 -40.34741 -38.71820 -37.74699 -35.74690
-33.77253 -32.83796 -32.11825 -31.86405 -29.01314 -26.96977 -25.82891 -24.88154
-24.59327 -23.30128 -22.38483 -20.84155 -19.62359 -19.54496 -19.46650 -19.43817
-18.49365 -17.93160 -17.27568 -16.94639 -16.81800 -16.27639 -16.04699 -16.04006
-15.76252 -15.59066 -15.44122 -15.29335 -15.12183 -14.99444 -14.83065 -14.75803
-14.64120 -14.42304 -14.21264 -14.12509 -13.67260 -13.39332 -13.32515 -12.83398
-12.80307 -12.56275 -12.31211 -12.16387 -11.99474 -11.87637 -11.44966 -11.05887
-10.69383 -10.24705 -10.11840 -9.94959 -8.92958 -8.24606 -5.40538 -0.51865
-0.13765 1.33210 1.36382 1.46276 1.52994 1.54814 1.78111 2.20737
2.43013 2.59747 2.88506 2.92510 2.98678 3.29680 3.32263 3.33762
3.64727 3.95299 4.02611 4.07961 4.11299 4.21076 4.30982 4.36157
4.51172 4.55954 4.65654 4.69653 4.74321 4.81634 4.92171 4.95261
5.08734 5.13215 5.37640 5.41684 5.83334 6.08981 6.24224 6.74555
6.86219 6.88296 7.59828 8.02896 8.93150
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.012017 B = 0.004422 C = 0.004040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2329.471799 B = 6330.652712 C = 6928.517099
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.004 4.004
3 Si 0.890 3.110
4 H -0.306 1.306
5 H -0.289 1.289
6 H -0.243 1.243
7 C -0.264 4.264
8 H 0.055 0.945
9 N -0.610 5.610
10 C 0.132 3.868
11 C 0.105 3.895
12 N -0.589 5.589
13 C 0.541 3.459
14 O -0.556 6.556
15 C -0.073 4.073
16 C -0.121 4.121
17 C 0.152 3.848
18 O -0.497 6.497
19 C -0.116 4.116
20 C -0.051 4.051
21 C -0.172 4.172
22 C 0.499 3.501
23 F -0.171 7.171
24 F -0.189 7.189
25 F -0.171 7.171
26 C 0.095 3.905
27 C 0.128 3.872
28 H 0.264 0.736
29 H 0.023 0.977
30 H 0.079 0.921
31 H 0.091 0.909
32 H 0.079 0.921
33 H 0.152 0.848
34 H 0.423 0.577
35 H 0.181 0.819
36 H 0.172 0.828
37 H 0.084 0.916
38 H 0.105 0.895
39 H 0.028 0.972
40 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.099 1.377 18.599 22.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.202 4.202
3 Si 0.717 3.283
4 H -0.234 1.234
5 H -0.216 1.216
6 H -0.167 1.167
7 C -0.393 4.393
8 H 0.073 0.927
9 N -0.334 5.334
10 C 0.006 3.994
11 C -0.019 4.019
12 N -0.321 5.321
13 C 0.329 3.671
14 O -0.435 6.435
15 C -0.076 4.076
16 C -0.140 4.140
17 C 0.106 3.894
18 O -0.312 6.312
19 C -0.134 4.134
20 C -0.069 4.069
21 C -0.175 4.175
22 C 0.445 3.555
23 F -0.153 7.153
24 F -0.171 7.171
25 F -0.152 7.152
26 C -0.029 4.029
27 C 0.002 3.998
28 H 0.073 0.927
29 H 0.041 0.959
30 H 0.097 0.903
31 H 0.110 0.890
32 H 0.097 0.903
33 H 0.170 0.830
34 H 0.285 0.715
35 H 0.199 0.801
36 H 0.189 0.811
37 H 0.102 0.898
38 H 0.123 0.877
39 H 0.046 0.954
40 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 13.733 0.603 18.527 23.069
hybrid contribution -0.162 1.174 -1.311 1.767
sum 13.571 1.777 17.216 21.994
Atomic orbital electron populations
1.70177 1.07502 1.27545 1.51210 1.25609 0.95156 0.99846 0.99611
0.86734 0.81673 0.82586 0.77300 1.23419 1.21554 1.16661 1.18708
0.96911 0.95985 1.27687 0.92680 1.44396 1.17662 1.43217 1.28151
1.21410 0.90914 0.91433 0.95633 1.22117 1.01884 0.92992 0.84880
1.47998 1.17470 1.38324 1.28266 1.18710 0.81945 0.82371 0.84118
1.90830 1.41615 1.40695 1.70385 1.19419 0.95262 0.97757 0.95181
1.21678 0.99033 1.01240 0.92052 1.18453 0.91066 0.93683 0.86171
1.84779 1.39582 1.61183 1.45633 1.21917 0.92862 0.98316 1.00321
1.21159 1.00282 0.95775 0.89694 1.20023 0.95413 1.04982 0.97035
1.18489 0.81280 0.74043 0.81738 1.93153 1.61256 1.70384 1.90468
1.93223 1.83851 1.88183 1.51812 1.93292 1.87461 1.39574 1.94888
1.22634 0.91044 0.91256 0.97934 1.21795 0.98822 0.92649 0.86529
0.92693 0.95935 0.90288 0.89048 0.90308 0.83004 0.71517 0.80127
0.81078 0.89757 0.87704 0.95392 0.91467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.98 13.97 21.65 0.30 -53.68 16
2 C 0.00 -0.21 4.81 84.86 0.41 0.20 16
3 Si 0.89 42.37 26.46 68.60 1.81 44.18 16
4 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16
5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16
6 H -0.24 -10.87 4.96 99.48 0.49 -10.38 16
7 C -0.26 -14.09 9.85 84.03 0.83 -13.27 16
8 H 0.06 3.20 8.05 -2.91 -0.02 3.17 16
9 N -0.61 -27.37 2.71 -697.37 -1.89 -29.26 16
10 C 0.13 5.11 6.67 86.41 0.58 5.68 16
11 C 0.10 3.52 6.60 86.41 0.57 4.09 16
12 N -0.59 -19.20 2.94 -820.54 -2.41 -21.62 16
13 C 0.54 17.71 6.00 86.79 0.52 18.23 16
14 O -0.56 -21.48 13.64 -3.89 -0.05 -21.53 16
15 C -0.07 -1.88 4.64 -20.10 -0.09 -1.97 16
16 C -0.12 -2.34 7.62 22.63 0.17 -2.17 16
17 C 0.15 2.13 6.70 22.47 0.15 2.28 16
18 O -0.50 -5.25 13.50 -92.50 -1.25 -6.50 16
19 C -0.12 -1.31 9.98 22.42 0.22 -1.09 16
20 C -0.05 -0.78 9.41 22.22 0.21 -0.57 16
21 C -0.17 -4.11 5.40 -19.60 -0.11 -4.21 16
22 C 0.50 14.17 2.85 71.24 0.20 14.37 16
23 F -0.17 -4.07 15.97 44.97 0.72 -3.36 16
24 F -0.19 -6.28 16.50 44.97 0.74 -5.54 16
25 F -0.17 -5.70 14.58 44.97 0.66 -5.04 16
26 C 0.10 2.89 5.76 86.56 0.50 3.39 16
27 C 0.13 5.05 4.56 86.56 0.39 5.44 16
28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16
29 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16
30 H 0.08 2.97 7.93 -2.39 -0.02 2.95 16
31 H 0.09 3.03 6.99 -2.38 -0.02 3.02 16
32 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16
33 H 0.15 2.75 7.69 -2.91 -0.02 2.73 16
34 H 0.42 0.46 9.06 -74.05 -0.67 -0.21 16
35 H 0.18 0.79 8.06 -2.92 -0.02 0.77 16
36 H 0.17 1.78 7.15 -2.91 -0.02 1.76 16
37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
38 H 0.10 2.55 5.22 -2.38 -0.01 2.54 16
39 H 0.03 1.15 6.77 -2.39 -0.02 1.13 16
40 H 0.07 2.80 5.59 -2.38 -0.01 2.78 16
Total: -1.00 -72.60 335.53 3.42 -69.18
By element:
Atomic # 1 Polarization: 2.52 SS G_CDS: 0.24 Total: 2.76 kcal
Atomic # 6 Polarization: 25.84 SS G_CDS: 4.56 Total: 30.40 kcal
Atomic # 7 Polarization: -100.55 SS G_CDS: -4.00 Total: -104.56 kcal
Atomic # 8 Polarization: -26.73 SS G_CDS: -1.30 Total: -28.03 kcal
Atomic # 9 Polarization: -16.05 SS G_CDS: 2.12 Total: -13.94 kcal
Atomic # 14 Polarization: 42.37 SS G_CDS: 1.81 Total: 44.18 kcal
Total: -72.60 3.42 -69.18 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000189071076.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.143 kcal
(2) G-P(sol) polarization free energy of solvation -72.598 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) -172.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds