Wall clock time and date at job start Sat Apr 11 2020 07:02:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46502 * 120.00062 * 2 1
4 4 S 1.65606 * 120.00003 * 180.02562 * 2 1 3
5 5 O 1.42098 * 106.40010 * 203.53824 * 4 2 1
6 6 O 1.42094 * 106.39890 * 336.45188 * 4 2 1
7 7 C 1.76194 * 107.22007 * 89.99703 * 4 2 1
8 8 C 1.38460 * 119.89116 * 269.72356 * 7 4 2
9 9 C 1.38204 * 120.34204 * 179.76409 * 8 7 4
10 10 C 1.38325 * 120.11285 * 0.51647 * 9 8 7
11 11 F 1.35102 * 120.10601 * 179.72452 * 10 9 8
12 12 C 1.39821 * 119.78148 * 359.73663 * 10 9 8
13 13 C 1.47687 * 120.16848 * 180.02562 * 12 10 9
14 14 O 1.21575 * 119.99710 * 359.97438 * 13 12 10
15 15 N 1.34770 * 120.00245 * 179.97438 * 13 12 10
16 16 C 1.46504 * 120.00241 * 180.02562 * 15 13 12
17 17 C 1.53005 * 109.47367 * 179.97438 * 16 15 13
18 18 C 1.50699 * 109.47108 * 180.02562 * 17 16 15
19 19 H 1.07999 * 119.99830 * 359.97438 * 18 17 16
20 20 C 1.37877 * 119.99982 * 180.02562 * 18 17 16
21 21 N 1.31513 * 120.00088 * 179.97438 * 20 18 17
22 22 Si 1.86798 * 119.99699 * 359.97438 * 20 18 17
23 23 H 1.48504 * 109.47188 * 90.00293 * 22 20 18
24 24 H 1.48501 * 109.46923 * 209.99335 * 22 20 18
25 25 H 1.48493 * 109.47613 * 330.00051 * 22 20 18
26 26 C 1.37860 * 119.89238 * 90.00220 * 7 4 2
27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3
28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3
29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3
30 30 H 1.09001 * 109.47274 * 0.02562 * 3 2 1
31 31 H 1.09000 * 109.47166 * 120.00409 * 3 2 1
32 32 H 1.09004 * 109.47230 * 240.00361 * 3 2 1
33 33 H 1.08007 * 119.82892 * 0.02562 * 8 7 4
34 34 H 1.07998 * 119.94269 * 180.25334 * 9 8 7
35 35 H 0.97003 * 120.00026 * 0.02562 * 15 13 12
36 36 H 1.09002 * 109.47141 * 300.00484 * 16 15 13
37 37 H 1.08999 * 109.46730 * 59.99883 * 16 15 13
38 38 H 1.09000 * 109.47080 * 300.00050 * 17 16 15
39 39 H 1.08994 * 109.46550 * 60.00026 * 17 16 15
40 40 H 0.96996 * 119.99920 * 180.02562 * 21 20 18
41 41 H 1.07998 * 120.06050 * 359.95228 * 26 7 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 16 2.2930 -1.4342 -0.0006
5 8 3.5759 -1.1570 0.5439
6 8 1.4114 -2.4067 0.5435
7 6 2.5537 -1.8852 -1.6838
8 6 1.6190 -2.6668 -2.3415
9 6 1.8118 -3.0220 -3.6631
10 6 2.9474 -2.6066 -4.3348
11 9 3.1383 -2.9586 -5.6251
12 6 3.8971 -1.8215 -3.6739
13 6 5.1123 -1.3728 -4.3831
14 8 5.2892 -1.6864 -5.5443
15 7 6.0253 -0.6158 -3.7430
16 6 7.2306 -0.1702 -4.4466
17 6 8.0930 0.6679 -3.5006
18 6 9.3325 1.1267 -4.2246
19 1 9.4896 0.8481 -5.2562
20 6 10.2664 1.9013 -3.5698
21 7 11.3483 2.3013 -4.2015
22 14 9.9949 2.3826 -1.7854
23 1 10.5928 1.3525 -0.8984
24 1 10.6383 3.6951 -1.5234
25 1 8.5381 2.4827 -1.5158
26 6 3.6905 -1.4635 -2.3399
27 1 -0.3634 0.0000 -1.0277
28 1 -0.3633 0.8900 0.5139
29 1 -0.3633 -0.8900 0.5139
30 1 1.4892 2.0973 0.0005
31 1 2.8242 1.3264 0.8899
32 1 2.8241 1.3265 -0.8900
33 1 0.7327 -2.9972 -1.8202
34 1 1.0766 -3.6285 -4.1710
35 1 5.8843 -0.3659 -2.8164
36 1 7.7973 -1.0386 -4.7823
37 1 6.9458 0.4331 -5.3086
38 1 7.5260 1.5364 -3.1654
39 1 8.3776 0.0649 -2.6384
40 1 12.0055 2.8460 -3.7407
41 1 4.4197 -0.8571 -1.8234
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273110195.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:43
Heat of formation + Delta-G solvation = -120.092231 kcal
Electronic energy + Delta-G solvation = -27807.334084 eV
Core-core repulsion = 23536.334561 eV
Total energy + Delta-G solvation = -4270.999523 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.104 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-49.29430 -40.19272 -38.55081 -37.71231 -36.62947 -36.24476 -35.16936 -33.01930
-32.03525 -31.37531 -29.98403 -28.56453 -25.58347 -25.17575 -24.14305 -23.47097
-21.11507 -20.80866 -19.40590 -18.68676 -18.05031 -17.59162 -17.31283 -16.86436
-16.60250 -16.27559 -16.12181 -15.20477 -15.06784 -15.01687 -14.90221 -14.73544
-14.20208 -13.86073 -13.70793 -13.68860 -13.45308 -13.43400 -13.14035 -12.87641
-12.72481 -12.62057 -12.50850 -12.11138 -12.07899 -12.00535 -11.54703 -11.48987
-11.25747 -10.45360 -10.38582 -10.00090 -9.77411 -9.75579 -9.66242 -9.54490
-9.35974 -8.73447 -8.61572 -6.13136 -4.13904 -0.17978 0.11107 0.37076
2.24403 2.58882 3.19922 3.23794 3.25263 3.33101 3.33493 3.35868
3.61929 3.75525 4.08195 4.25148 4.28719 4.36282 4.57740 4.70092
4.88440 4.90122 4.94077 5.10483 5.13628 5.19728 5.28063 5.30954
5.39202 5.40920 5.43842 5.46887 5.96968 6.00322 6.12550 6.12906
6.48710 6.55440 7.05536 7.17299 7.61597 7.66738 8.27999 8.41846
8.90629 9.46618 10.99767
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.010490 B = 0.003438 C = 0.002725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2668.548444 B = 8141.181414 C =10273.865747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -1.005 6.005
3 C 0.085 3.915
4 S 2.698 3.302
5 O -0.944 6.944
6 O -0.951 6.951
7 C -0.703 4.703
8 C 0.028 3.972
9 C -0.183 4.183
10 C 0.213 3.787
11 F -0.102 7.102
12 C -0.184 4.184
13 C 0.548 3.452
14 O -0.526 6.526
15 N -0.717 5.717
16 C 0.129 3.871
17 C -0.023 4.023
18 C -0.524 4.524
19 H 0.076 0.924
20 C 0.070 3.930
21 N -0.898 5.898
22 Si 0.881 3.119
23 H -0.275 1.275
24 H -0.286 1.286
25 H -0.265 1.265
26 C 0.039 3.961
27 H 0.056 0.944
28 H 0.079 0.921
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.072 0.928
32 H 0.063 0.937
33 H 0.154 0.846
34 H 0.154 0.846
35 H 0.396 0.604
36 H 0.067 0.933
37 H 0.067 0.933
38 H 0.023 0.977
39 H 0.020 0.980
40 H 0.265 0.735
41 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.686 -6.045 9.769 29.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.845 5.845
3 C -0.060 4.060
4 S 2.786 3.214
5 O -0.934 6.934
6 O -0.942 6.942
7 C -0.788 4.788
8 C 0.008 3.992
9 C -0.203 4.203
10 C 0.192 3.808
11 F -0.080 7.080
12 C -0.189 4.189
13 C 0.333 3.667
14 O -0.404 6.404
15 N -0.367 5.367
16 C 0.008 3.992
17 C -0.061 4.061
18 C -0.563 4.563
19 H 0.094 0.906
20 C -0.132 4.132
21 N -0.536 5.536
22 Si 0.708 3.292
23 H -0.201 1.201
24 H -0.212 1.212
25 H -0.190 1.190
26 C 0.019 3.981
27 H 0.075 0.925
28 H 0.098 0.902
29 H 0.103 0.897
30 H 0.103 0.897
31 H 0.091 0.909
32 H 0.082 0.918
33 H 0.172 0.828
34 H 0.171 0.829
35 H 0.230 0.770
36 H 0.085 0.915
37 H 0.085 0.915
38 H 0.041 0.959
39 H 0.038 0.962
40 H 0.075 0.925
41 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -27.072 -6.585 9.591 29.466
hybrid contribution -0.037 0.485 0.239 0.542
sum -27.108 -6.100 9.830 29.474
Atomic orbital electron populations
1.21705 0.77864 1.04556 1.02333 1.57313 1.15545 1.21752 1.89855
1.21660 0.96905 0.84685 1.02738 1.01995 0.73338 0.72458 0.73566
1.93625 1.39774 1.84245 1.75787 1.93577 1.66153 1.58406 1.76016
1.31061 1.04459 1.15535 1.27788 1.20906 0.96301 0.89168 0.92820
1.21289 0.98115 1.05038 0.95842 1.17995 0.92739 0.91083 0.78958
1.91657 1.94655 1.88501 1.33142 1.20396 0.98037 1.04802 0.95654
1.17846 0.82630 0.79651 0.86549 1.90850 1.77263 1.56265 1.15986
1.46278 1.22540 1.51926 1.15987 1.21625 0.82781 0.98757 0.96045
1.19822 0.95803 0.94970 0.95524 1.20883 1.02515 1.32634 1.00221
0.90579 1.24994 0.94777 0.95273 0.98169 1.69900 1.10097 1.36395
1.37177 0.86767 0.78890 0.78186 0.85345 1.20096 1.21230 1.18992
1.21017 0.93687 0.91584 0.91771 0.92491 0.90205 0.89719 0.89743
0.90906 0.91814 0.82796 0.82860 0.76951 0.91496 0.91487 0.95855
0.96195 0.92498 0.82917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.34 10.63 59.85 0.64 0.98 16
2 N -1.00 -6.57 3.58 -129.20 -0.46 -7.03 16
3 C 0.09 0.49 10.30 59.85 0.62 1.10 16
4 S 2.70 24.57 5.70 -107.50 -0.61 23.96 16
5 O -0.94 -11.41 16.43 -57.18 -0.94 -12.35 16
6 O -0.95 -10.07 15.86 -57.18 -0.91 -10.97 16
7 C -0.70 -6.40 5.97 -39.64 -0.24 -6.64 16
8 C 0.03 0.21 9.51 -39.51 -0.38 -0.16 16
9 C -0.18 -1.55 10.01 -39.56 -0.40 -1.95 16
10 C 0.21 2.60 7.29 -38.96 -0.28 2.31 16
11 F -0.10 -1.46 15.55 2.25 0.04 -1.43 16
12 C -0.18 -2.43 5.88 -104.92 -0.62 -3.04 16
13 C 0.55 9.24 7.77 -12.40 -0.10 9.14 16
14 O -0.53 -10.80 15.34 5.30 0.08 -10.72 16
15 N -0.72 -11.81 5.51 -61.30 -0.34 -12.14 16
16 C 0.13 2.60 5.61 -4.04 -0.02 2.58 16
17 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16
18 C -0.52 -14.52 9.66 -34.44 -0.33 -14.86 16
19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16
20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16
21 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16
22 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16
23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
25 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16
26 C 0.04 0.42 9.01 -39.19 -0.35 0.07 16
27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16
28 H 0.08 0.21 7.92 -51.93 -0.41 -0.20 16
29 H 0.08 0.37 7.02 -51.93 -0.36 0.00 16
30 H 0.08 0.30 7.79 -51.93 -0.40 -0.10 16
31 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16
32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.15 0.75 7.60 -52.48 -0.40 0.35 16
34 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16
35 H 0.40 5.38 6.51 -40.82 -0.27 5.11 16
36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16
37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
38 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16
39 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16
40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
41 H 0.15 1.44 5.95 -52.49 -0.31 1.13 16
LS Contribution 363.91 15.07 5.48 5.48
Total: -1.00 -36.67 363.91 -8.27 -44.94
By element:
Atomic # 1 Polarization: 4.71 SS G_CDS: -5.04 Total: -0.33 kcal
Atomic # 6 Polarization: -7.54 SS G_CDS: -1.67 Total: -9.21 kcal
Atomic # 7 Polarization: -45.53 SS G_CDS: -0.03 Total: -45.55 kcal
Atomic # 8 Polarization: -32.28 SS G_CDS: -1.77 Total: -34.05 kcal
Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal
Atomic # 16 Polarization: 24.57 SS G_CDS: -0.61 Total: 23.96 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -36.67 -8.27 -44.94 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273110195.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.153 kcal
(2) G-P(sol) polarization free energy of solvation -36.670 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds