Wall clock time and date at job start Sat Apr 11 2020 07:02:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86796 * 119.99983 * 2 1
4 4 H 1.48498 * 109.47437 * 269.99916 * 3 2 1
5 5 H 1.48503 * 109.47294 * 30.00143 * 3 2 1
6 6 H 1.48496 * 109.47456 * 149.99751 * 3 2 1
7 7 C 1.37882 * 120.00029 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99556 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99957 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.46649 * 179.97438 * 9 7 2
11 11 N 1.46506 * 109.46902 * 180.02562 * 10 9 7
12 12 C 1.34775 * 120.00318 * 180.02562 * 11 10 9
13 13 O 1.21355 * 119.99658 * 0.02562 * 12 11 10
14 14 C 1.49349 * 120.00056 * 180.02562 * 12 11 10
15 15 O 1.21375 * 120.00298 * 0.02562 * 14 12 11
16 16 N 1.34777 * 119.99809 * 180.27983 * 14 12 11
17 17 C 1.39724 * 120.00010 * 175.22549 * 16 14 12
18 18 C 1.38950 * 120.07851 * 34.71840 * 17 16 14
19 19 C 1.38066 * 119.92574 * 179.97438 * 18 17 16
20 20 C 1.38313 * 120.07567 * 0.02563 * 19 18 17
21 21 C 1.38270 * 120.15388 * 359.97438 * 20 19 18
22 22 C 1.38115 * 120.07350 * 359.74381 * 21 20 19
23 23 C 1.50701 * 120.03872 * 180.27459 * 22 21 20
24 24 C 1.53001 * 109.47081 * 265.25867 * 23 22 21
25 25 F 1.39897 * 109.47592 * 59.99857 * 24 23 22
26 26 F 1.39906 * 109.46813 * 180.02562 * 24 23 22
27 27 F 1.39904 * 109.47023 * 299.99625 * 24 23 22
28 28 H 0.96993 * 120.00225 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.46723 * 60.00509 * 9 7 2
30 30 H 1.08992 * 109.47412 * 300.00068 * 9 7 2
31 31 H 1.09004 * 109.46953 * 60.00881 * 10 9 7
32 32 H 1.08992 * 109.47458 * 300.00271 * 10 9 7
33 33 H 0.97002 * 119.99370 * 0.02562 * 11 10 9
34 34 H 0.96998 * 119.99903 * 355.21452 * 16 14 12
35 35 H 1.08007 * 120.03501 * 359.95942 * 18 17 16
36 36 H 1.08001 * 119.96299 * 179.97438 * 19 18 17
37 37 H 1.08009 * 119.92342 * 179.97438 * 20 19 18
38 38 H 1.08002 * 119.96052 * 180.02562 * 21 20 19
39 39 H 1.09005 * 109.47156 * 25.25492 * 23 22 21
40 40 H 1.09007 * 109.47123 * 145.25627 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0018
11 7 1.5129 -4.9308 -0.0024
12 6 2.1868 -6.0980 -0.0031
13 8 3.4004 -6.0980 -0.0027
14 6 1.4401 -7.3914 -0.0043
15 8 0.2263 -7.3915 -0.0052
16 7 2.1140 -8.5586 0.0008
17 6 1.4186 -9.7664 0.1004
18 6 0.1711 -9.9030 -0.4962
19 6 -0.5131 -11.0980 -0.3963
20 6 0.0417 -12.1584 0.2972
21 6 1.2828 -12.0260 0.8921
22 6 1.9753 -10.8353 0.7911
23 6 3.3307 -10.6939 1.4346
24 6 3.1737 -10.0691 2.8223
25 9 2.3647 -10.8904 3.6148
26 9 4.4321 -9.9373 3.4194
27 9 2.5810 -8.8076 2.7014
28 1 -0.4850 0.8400 -0.0004
29 1 0.6242 -2.5567 -0.8904
30 1 0.6248 -2.5572 0.8896
31 1 2.8727 -3.6047 0.8878
32 1 2.8714 -3.6039 -0.8922
33 1 0.5429 -4.9308 -0.0024
34 1 3.0817 -8.5601 -0.0649
35 1 -0.2629 -9.0751 -1.0373
36 1 -1.4829 -11.2047 -0.8594
37 1 -0.4959 -13.0921 0.3742
38 1 1.7132 -12.8562 1.4325
39 1 3.7925 -11.6768 1.5288
40 1 3.9610 -10.0539 0.8171
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273130177.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:46
Heat of formation + Delta-G solvation = -202.695333 kcal
Electronic energy + Delta-G solvation = -29810.629809 eV
Core-core repulsion = 24982.207960 eV
Total energy + Delta-G solvation = -4828.421849 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-50.30401 -47.82702 -47.75464 -41.22588 -39.61000 -38.22332 -35.66640 -34.83860
-33.79379 -32.88636 -30.39306 -29.83195 -28.91325 -25.91923 -24.31935 -24.20658
-22.69540 -21.58085 -21.05665 -20.29554 -19.02671 -18.70747 -18.50077 -17.86427
-17.51711 -16.74218 -16.27806 -16.08377 -15.91564 -15.34666 -14.89242 -14.74116
-14.59961 -14.55685 -14.38116 -14.26083 -14.19263 -13.92779 -13.91575 -13.66315
-13.54555 -13.29402 -13.11501 -12.94612 -12.34897 -12.32685 -12.06400 -11.70454
-11.43134 -11.26289 -11.08626 -10.71717 -10.67924 -10.43987 -9.85312 -9.52661
-9.29645 -9.21167 -8.78150 -8.52754 -8.44556 -6.12397 -4.16245 0.68059
0.95849 1.54379 2.29245 2.52744 3.19778 3.27693 3.34091 3.37582
3.38747 3.57263 3.62902 3.70361 3.72993 4.32898 4.37258 4.39032
4.56626 4.64500 4.77071 4.86108 5.01505 5.16588 5.24623 5.25163
5.59166 5.84396 5.94268 6.06078 6.11958 6.18901 6.19022 6.50241
6.60559 6.63282 6.80289 7.37103 7.51610 7.54202 7.75091 7.84395
8.12531 8.26141 8.89289 9.48865 10.99108
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.017111 B = 0.002392 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1636.012128 B =11701.073395 C =12754.911848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.060 3.940
3 Si 0.898 3.102
4 H -0.279 1.279
5 H -0.286 1.286
6 H -0.272 1.272
7 C -0.524 4.524
8 H 0.060 0.940
9 C 0.011 3.989
10 C 0.118 3.882
11 N -0.682 5.682
12 C 0.501 3.499
13 O -0.528 6.528
14 C 0.513 3.487
15 O -0.495 6.495
16 N -0.650 5.650
17 C 0.169 3.831
18 C -0.121 4.121
19 C -0.088 4.088
20 C -0.136 4.136
21 C -0.079 4.079
22 C -0.134 4.134
23 C -0.121 4.121
24 C 0.453 3.547
25 F -0.181 7.181
26 F -0.183 7.183
27 F -0.176 7.176
28 H 0.263 0.737
29 H 0.025 0.975
30 H 0.026 0.974
31 H 0.065 0.935
32 H 0.065 0.935
33 H 0.411 0.589
34 H 0.420 0.580
35 H 0.146 0.854
36 H 0.130 0.870
37 H 0.128 0.872
38 H 0.130 0.870
39 H 0.123 0.877
40 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.215 -28.567 0.974 28.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.143 4.143
3 Si 0.726 3.274
4 H -0.205 1.205
5 H -0.211 1.211
6 H -0.197 1.197
7 C -0.563 4.563
8 H 0.079 0.921
9 C -0.026 4.026
10 C -0.003 4.003
11 N -0.333 5.333
12 C 0.279 3.721
13 O -0.406 6.406
14 C 0.296 3.704
15 O -0.368 6.368
16 N -0.297 5.297
17 C 0.074 3.926
18 C -0.141 4.141
19 C -0.107 4.107
20 C -0.154 4.154
21 C -0.097 4.097
22 C -0.137 4.137
23 C -0.160 4.160
24 C 0.399 3.601
25 F -0.163 7.163
26 F -0.165 7.165
27 F -0.157 7.157
28 H 0.073 0.927
29 H 0.044 0.956
30 H 0.044 0.956
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.247 0.753
34 H 0.258 0.742
35 H 0.164 0.836
36 H 0.148 0.852
37 H 0.145 0.855
38 H 0.148 0.852
39 H 0.141 0.859
40 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 3.073 -28.285 1.024 28.470
hybrid contribution 0.399 1.048 0.260 1.151
sum 3.471 -27.237 1.284 27.488
Atomic orbital electron populations
1.69954 1.06107 1.27008 1.49986 1.25003 0.94901 0.99464 0.94889
0.86491 0.79808 0.82922 0.78208 1.20530 1.21135 1.19714 1.21003
0.93226 0.90201 1.51835 0.92141 1.19360 0.94172 0.90827 0.98284
1.21985 0.96320 0.80508 1.01491 1.46236 1.11849 1.05699 1.69495
1.19680 0.87668 0.84891 0.79819 1.90747 1.12991 1.87324 1.49565
1.20649 0.87830 0.85403 0.76504 1.90758 1.13327 1.87283 1.45454
1.43186 1.11682 1.03607 1.71236 1.17564 0.93688 0.84738 0.96594
1.21377 0.94168 0.98856 0.99720 1.21181 0.99643 0.92243 0.97590
1.21153 0.95723 0.99359 0.99185 1.20851 0.94645 0.96022 0.98186
1.19091 0.96500 0.95444 1.02656 1.21706 0.97708 1.05256 0.91290
1.20485 0.73784 0.77115 0.88727 1.93188 1.73867 1.72280 1.76918
1.93207 1.41349 1.95939 1.85967 1.93253 1.84135 1.42228 1.96106
0.92736 0.95638 0.95616 0.91693 0.91690 0.75301 0.74151 0.83647
0.85193 0.85452 0.85177 0.85864 0.86802
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16
4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16
8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16
9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16
10 C 0.12 2.42 5.61 -4.04 -0.02 2.40 16
11 N -0.68 -12.06 5.55 -60.76 -0.34 -12.40 16
12 C 0.50 8.33 7.89 -11.63 -0.09 8.24 16
13 O -0.53 -9.59 16.48 5.49 0.09 -9.50 16
14 C 0.51 7.43 7.73 -11.63 -0.09 7.34 16
15 O -0.50 -7.83 13.89 5.47 0.08 -7.76 16
16 N -0.65 -7.50 3.90 -10.30 -0.04 -7.54 16
17 C 0.17 1.80 5.95 -83.75 -0.50 1.30 16
18 C -0.12 -1.30 8.70 -39.38 -0.34 -1.65 16
19 C -0.09 -0.74 10.04 -39.62 -0.40 -1.14 16
20 C -0.14 -0.97 10.04 -39.54 -0.40 -1.37 16
21 C -0.08 -0.56 9.62 -39.61 -0.38 -0.95 16
22 C -0.13 -1.14 4.77 -104.42 -0.50 -1.64 16
23 C -0.12 -0.82 5.11 -27.88 -0.14 -0.96 16
24 C 0.45 4.46 3.15 37.16 0.12 4.58 16
25 F -0.18 -1.88 16.97 2.25 0.04 -1.84 16
26 F -0.18 -1.88 17.32 2.25 0.04 -1.84 16
27 F -0.18 -2.26 15.61 2.25 0.04 -2.23 16
28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16
31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16
32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
33 H 0.41 6.89 7.94 -40.82 -0.32 6.56 16
34 H 0.42 4.16 6.77 -40.82 -0.28 3.88 16
35 H 0.15 1.74 6.20 -52.48 -0.33 1.42 16
36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16
37 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16
38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16
39 H 0.12 0.47 8.05 -51.93 -0.42 0.05 16
40 H 0.11 0.63 6.71 -51.92 -0.35 0.28 16
LS Contribution 360.58 15.07 5.43 5.43
Total: -1.00 -31.93 360.58 -6.44 -38.37
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: -4.19 Total: 5.12 kcal
Atomic # 6 Polarization: 6.56 SS G_CDS: -3.30 Total: 3.26 kcal
Atomic # 7 Polarization: -45.51 SS G_CDS: 0.36 Total: -45.15 kcal
Atomic # 8 Polarization: -17.43 SS G_CDS: 0.17 Total: -17.26 kcal
Atomic # 9 Polarization: -6.02 SS G_CDS: 0.11 Total: -5.91 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -31.93 -6.44 -38.37 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273130177.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -164.327 kcal
(2) G-P(sol) polarization free energy of solvation -31.930 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal
(6) G-S(sol) free energy of system = (1) + (5) -202.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds