Wall clock time and date at job start Sat Apr 11 2020 07:02:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86796 * 119.99983 * 2 1
4 4 H 1.48498 * 109.47437 * 269.99916 * 3 2 1
5 5 H 1.48503 * 109.47294 * 30.00143 * 3 2 1
6 6 H 1.48496 * 109.47456 * 149.99751 * 3 2 1
7 7 C 1.37882 * 120.00029 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99556 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99957 * 359.97438 * 7 2 1
10 10 C 1.53001 * 109.46649 * 179.97438 * 9 7 2
11 11 N 1.46506 * 109.46902 * 180.02562 * 10 9 7
12 12 C 1.34775 * 120.00318 * 180.02562 * 11 10 9
13 13 O 1.21355 * 119.99658 * 0.02562 * 12 11 10
14 14 C 1.49349 * 120.00056 * 180.02562 * 12 11 10
15 15 O 1.21375 * 120.00298 * 0.02562 * 14 12 11
16 16 N 1.34777 * 119.99809 * 180.27983 * 14 12 11
17 17 C 1.39724 * 120.00010 * 175.22549 * 16 14 12
18 18 C 1.38950 * 120.07851 * 34.71840 * 17 16 14
19 19 C 1.38066 * 119.92574 * 179.97438 * 18 17 16
20 20 C 1.38313 * 120.07567 * 0.02563 * 19 18 17
21 21 C 1.38270 * 120.15388 * 359.97438 * 20 19 18
22 22 C 1.38115 * 120.07350 * 359.74381 * 21 20 19
23 23 C 1.50701 * 120.03872 * 180.27459 * 22 21 20
24 24 C 1.53001 * 109.47081 * 265.25867 * 23 22 21
25 25 F 1.39897 * 109.47592 * 59.99857 * 24 23 22
26 26 F 1.39906 * 109.46813 * 180.02562 * 24 23 22
27 27 F 1.39904 * 109.47023 * 299.99625 * 24 23 22
28 28 H 0.96993 * 120.00225 * 0.02562 * 1 2 3
29 29 H 1.09004 * 109.46723 * 60.00509 * 9 7 2
30 30 H 1.08992 * 109.47412 * 300.00068 * 9 7 2
31 31 H 1.09004 * 109.46953 * 60.00881 * 10 9 7
32 32 H 1.08992 * 109.47458 * 300.00271 * 10 9 7
33 33 H 0.97002 * 119.99370 * 0.02562 * 11 10 9
34 34 H 0.96998 * 119.99903 * 355.21452 * 16 14 12
35 35 H 1.08007 * 120.03501 * 359.95942 * 18 17 16
36 36 H 1.08001 * 119.96299 * 179.97438 * 19 18 17
37 37 H 1.08009 * 119.92342 * 179.97438 * 20 19 18
38 38 H 1.08002 * 119.96052 * 180.02562 * 21 20 19
39 39 H 1.09005 * 109.47156 * 25.25492 * 23 22 21
40 40 H 1.09007 * 109.47123 * 145.25627 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0018
11 7 1.5129 -4.9308 -0.0024
12 6 2.1868 -6.0980 -0.0031
13 8 3.4004 -6.0980 -0.0027
14 6 1.4401 -7.3914 -0.0043
15 8 0.2263 -7.3915 -0.0052
16 7 2.1140 -8.5586 0.0008
17 6 1.4186 -9.7664 0.1004
18 6 0.1711 -9.9030 -0.4962
19 6 -0.5131 -11.0980 -0.3963
20 6 0.0417 -12.1584 0.2972
21 6 1.2828 -12.0260 0.8921
22 6 1.9753 -10.8353 0.7911
23 6 3.3307 -10.6939 1.4346
24 6 3.1737 -10.0691 2.8223
25 9 2.3647 -10.8904 3.6148
26 9 4.4321 -9.9373 3.4194
27 9 2.5810 -8.8076 2.7014
28 1 -0.4850 0.8400 -0.0004
29 1 0.6242 -2.5567 -0.8904
30 1 0.6248 -2.5572 0.8896
31 1 2.8727 -3.6047 0.8878
32 1 2.8714 -3.6039 -0.8922
33 1 0.5429 -4.9308 -0.0024
34 1 3.0817 -8.5601 -0.0649
35 1 -0.2629 -9.0751 -1.0373
36 1 -1.4829 -11.2047 -0.8594
37 1 -0.4959 -13.0921 0.3742
38 1 1.7132 -12.8562 1.4325
39 1 3.7925 -11.6768 1.5288
40 1 3.9610 -10.0539 0.8171
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273130177.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:45
Heat of formation + Delta-G solvation = -222.883165 kcal
Electronic energy + Delta-G solvation = -29811.505219 eV
Core-core repulsion = 24982.207960 eV
Total energy + Delta-G solvation = -4829.297259 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-51.10024 -48.62028 -48.58927 -42.26941 -40.65487 -39.35000 -37.01464 -36.05253
-34.86397 -34.42751 -31.76419 -31.04591 -29.61355 -27.50929 -25.72736 -24.94558
-23.72485 -22.80974 -22.26192 -21.46829 -20.06342 -19.50543 -19.40870 -18.71259
-18.58954 -18.33005 -17.62421 -17.26777 -16.66054 -16.59614 -16.45668 -16.12727
-15.62969 -15.50265 -15.36070 -15.21833 -15.01654 -14.88781 -14.76479 -14.75540
-14.62959 -14.32204 -14.21762 -13.94438 -13.61886 -13.28438 -13.07869 -12.96259
-12.95373 -12.55083 -12.38088 -12.30725 -12.29924 -11.70833 -11.54736 -11.43549
-10.76782 -10.63006 -10.26609 -9.88929 -9.28976 -8.24699 -6.35953 -0.16576
0.25012 0.51731 1.15358 1.42725 1.43136 1.54613 1.83536 1.98775
2.36806 2.51898 2.66136 2.91059 3.03492 3.05026 3.10454 3.26506
3.67146 3.78243 4.05831 4.22024 4.31923 4.35114 4.41490 4.42817
4.55317 4.58938 4.78811 4.97200 5.00751 5.13107 5.22999 5.39524
5.41773 5.52939 5.54720 5.72814 5.81115 5.95212 6.10913 6.22533
6.55643 6.75643 6.81451 7.33739 8.87428
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.017111 B = 0.002392 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1636.012128 B =11701.073395 C =12754.911848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.005 3.995
3 Si 0.968 3.032
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.264 1.264
7 C -0.545 4.545
8 H 0.065 0.935
9 C 0.019 3.981
10 C 0.138 3.862
11 N -0.685 5.685
12 C 0.504 3.496
13 O -0.542 6.542
14 C 0.518 3.482
15 O -0.514 6.514
16 N -0.633 5.633
17 C 0.140 3.860
18 C -0.143 4.143
19 C -0.094 4.094
20 C -0.128 4.128
21 C -0.077 4.077
22 C -0.132 4.132
23 C -0.116 4.116
24 C 0.446 3.554
25 F -0.185 7.185
26 F -0.187 7.187
27 F -0.199 7.199
28 H 0.266 0.734
29 H 0.009 0.991
30 H 0.007 0.993
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.415 0.585
34 H 0.427 0.573
35 H 0.124 0.876
36 H 0.146 0.854
37 H 0.158 0.842
38 H 0.162 0.838
39 H 0.161 0.839
40 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.342 -30.780 1.153 31.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.194 4.194
3 Si 0.792 3.208
4 H -0.197 1.197
5 H -0.208 1.208
6 H -0.188 1.188
7 C -0.583 4.583
8 H 0.084 0.916
9 C -0.019 4.019
10 C 0.015 3.985
11 N -0.336 5.336
12 C 0.284 3.716
13 O -0.421 6.421
14 C 0.300 3.700
15 O -0.389 6.389
16 N -0.281 5.281
17 C 0.047 3.953
18 C -0.163 4.163
19 C -0.113 4.113
20 C -0.147 4.147
21 C -0.095 4.095
22 C -0.135 4.135
23 C -0.154 4.154
24 C 0.392 3.608
25 F -0.167 7.167
26 F -0.169 7.169
27 F -0.180 7.180
28 H 0.074 0.926
29 H 0.027 0.973
30 H 0.025 0.975
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.251 0.749
34 H 0.267 0.733
35 H 0.142 0.858
36 H 0.164 0.836
37 H 0.175 0.825
38 H 0.180 0.820
39 H 0.179 0.821
40 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 4.221 -30.551 1.201 30.865
hybrid contribution 0.018 1.578 0.235 1.595
sum 4.239 -28.974 1.436 29.317
Atomic orbital electron populations
1.70074 1.07714 1.28060 1.50961 1.25920 0.95768 1.03298 0.94403
0.85404 0.78618 0.78240 0.78542 1.19687 1.20794 1.18781 1.21450
0.93780 0.91519 1.51568 0.91647 1.19175 0.94337 0.91895 0.96473
1.21519 0.95111 0.80511 1.01330 1.46055 1.11970 1.05382 1.70238
1.20020 0.87539 0.85364 0.78712 1.90729 1.13661 1.87711 1.49957
1.20106 0.87388 0.85342 0.77151 1.90760 1.13818 1.87395 1.46940
1.43013 1.11957 1.03206 1.69883 1.17783 0.94178 0.84775 0.98582
1.21367 0.94815 0.99443 1.00693 1.21429 1.00251 0.91785 0.97796
1.21558 0.95711 0.99876 0.97505 1.21295 0.94438 0.96243 0.97498
1.19285 0.97218 0.95082 1.01895 1.21844 0.97210 1.07260 0.89063
1.20999 0.73313 0.76373 0.90091 1.93175 1.74031 1.72151 1.77311
1.93196 1.41484 1.95930 1.86240 1.93210 1.84582 1.44004 1.96254
0.92552 0.97282 0.97511 0.92014 0.91626 0.74852 0.73336 0.85780
0.83623 0.82459 0.82028 0.82148 0.85692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.94 13.29 21.45 0.28 -54.66 16
2 C 0.00 0.27 5.46 84.66 0.46 0.73 16
3 Si 0.97 43.39 29.54 68.60 2.03 45.41 16
4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16
7 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16
8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16
9 C 0.02 0.94 5.09 29.85 0.15 1.09 16
10 C 0.14 5.75 5.61 86.38 0.48 6.23 16
11 N -0.69 -24.90 5.55 -464.51 -2.58 -27.48 16
12 C 0.50 17.03 7.89 87.24 0.69 17.72 16
13 O -0.54 -19.71 16.48 -3.26 -0.05 -19.76 16
14 C 0.52 15.31 7.73 87.24 0.67 15.99 16
15 O -0.51 -16.85 13.89 -3.33 -0.05 -16.90 16
16 N -0.63 -14.52 3.90 -304.84 -1.19 -15.71 16
17 C 0.14 2.89 5.95 38.21 0.23 3.12 16
18 C -0.14 -3.07 8.70 22.40 0.19 -2.87 16
19 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16
20 C -0.13 -1.42 10.04 22.30 0.22 -1.19 16
21 C -0.08 -0.83 9.62 22.25 0.21 -0.61 16
22 C -0.13 -1.94 4.77 -19.73 -0.09 -2.03 16
23 C -0.12 -1.25 5.11 29.85 0.15 -1.10 16
24 C 0.45 8.08 3.15 71.98 0.23 8.31 16
25 F -0.19 -3.51 16.97 44.97 0.76 -2.74 16
26 F -0.19 -3.56 17.32 44.97 0.78 -2.79 16
27 F -0.20 -5.05 15.61 44.97 0.70 -4.34 16
28 H 0.27 14.79 8.31 -92.71 -0.77 14.01 16
29 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16
30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
31 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16
32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16
33 H 0.42 14.51 7.94 -92.71 -0.74 13.77 16
34 H 0.43 8.22 6.77 -92.71 -0.63 7.59 16
35 H 0.12 3.14 6.20 -2.91 -0.02 3.12 16
36 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16
37 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16
38 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16
39 H 0.16 0.53 8.05 -2.38 -0.02 0.51 16
40 H 0.12 1.08 6.71 -2.38 -0.02 1.07 16
Total: -1.00 -69.85 360.58 4.51 -65.34
By element:
Atomic # 1 Polarization: 19.51 SS G_CDS: -0.24 Total: 19.27 kcal
Atomic # 6 Polarization: 10.29 SS G_CDS: 4.06 Total: 14.35 kcal
Atomic # 7 Polarization: -94.36 SS G_CDS: -3.48 Total: -97.85 kcal
Atomic # 8 Polarization: -36.56 SS G_CDS: -0.10 Total: -36.66 kcal
Atomic # 9 Polarization: -12.12 SS G_CDS: 2.24 Total: -9.87 kcal
Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal
Total: -69.85 4.51 -65.34 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273130177.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -157.547 kcal
(2) G-P(sol) polarization free energy of solvation -69.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal
(6) G-S(sol) free energy of system = (1) + (5) -222.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds