Wall clock time and date at job start Sat Apr 11 2020 07:03:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99655 * 2 1
4 4 H 1.48503 * 109.46955 * 240.00384 * 3 2 1
5 5 H 1.48491 * 109.47229 * 0.02562 * 3 2 1
6 6 H 1.48505 * 109.46819 * 120.00623 * 3 2 1
7 7 C 1.37872 * 120.00118 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99977 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00104 * 359.97438 * 7 2 1
10 10 N 1.46499 * 109.47202 * 180.02562 * 9 7 2
11 11 C 1.34775 * 119.99854 * 180.02562 * 10 9 7
12 12 O 1.21363 * 120.00209 * 359.97438 * 11 10 9
13 13 C 1.49354 * 119.99977 * 180.02562 * 11 10 9
14 14 O 1.21373 * 119.99823 * 359.97438 * 13 11 10
15 15 N 1.34775 * 119.99977 * 179.97438 * 13 11 10
16 16 C 1.39726 * 119.99883 * 185.27057 * 15 13 11
17 17 C 1.38954 * 120.07590 * 33.33822 * 16 15 13
18 18 C 1.38077 * 119.92410 * 179.97438 * 17 16 15
19 19 C 1.38310 * 120.07681 * 0.25580 * 18 17 16
20 20 C 1.38278 * 120.15081 * 359.48342 * 19 18 17
21 21 C 1.50699 * 119.96104 * 180.25944 * 20 19 18
22 22 C 1.53005 * 109.47046 * 270.26038 * 21 20 19
23 23 C 1.52999 * 109.47307 * 180.02562 * 22 21 20
24 24 F 1.39903 * 109.46977 * 59.99295 * 23 22 21
25 25 F 1.39891 * 109.47528 * 179.97438 * 23 22 21
26 26 F 1.39904 * 109.46932 * 300.00013 * 23 22 21
27 27 C 1.38111 * 120.07366 * 0.51666 * 20 19 18
28 28 H 0.97003 * 120.00080 * 359.97438 * 1 2 3
29 29 H 1.09004 * 109.46696 * 60.00585 * 9 7 2
30 30 H 1.08998 * 109.47363 * 300.00628 * 9 7 2
31 31 H 0.96998 * 119.99927 * 0.02562 * 10 9 7
32 32 H 0.97000 * 120.00335 * 5.27613 * 15 13 11
33 33 H 1.08003 * 120.03857 * 359.97438 * 17 16 15
34 34 H 1.08001 * 119.96156 * 179.97438 * 18 17 16
35 35 H 1.07998 * 119.92206 * 179.72530 * 19 18 17
36 36 H 1.08999 * 109.47187 * 30.25079 * 21 20 19
37 37 H 1.08997 * 109.47354 * 150.25575 * 21 20 19
38 38 H 1.09001 * 109.47044 * 299.99807 * 22 21 20
39 39 H 1.08997 * 109.47423 * 59.99579 * 22 21 20
40 40 H 1.08006 * 120.03571 * 179.76463 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2126
5 1 1.2841 2.7464 0.0006
6 1 3.1030 1.6964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 7 2.2031 -3.6126 -0.0005
11 6 1.7539 -4.8833 -0.0011
12 8 0.5607 -5.1051 -0.0011
13 6 2.7244 -6.0185 -0.0005
14 8 3.9177 -5.7966 0.0000
15 7 2.2752 -7.2891 -0.0005
16 6 3.1783 -8.3494 0.1112
17 6 4.3324 -8.2040 0.8713
18 6 5.2225 -9.2540 0.9799
19 6 4.9690 -10.4477 0.3290
20 6 3.8189 -10.5977 -0.4238
21 6 3.5441 -11.9023 -1.1264
22 6 4.1572 -11.8657 -2.5278
23 6 3.8777 -13.1899 -3.2415
24 9 2.4957 -13.3829 -3.3418
25 9 4.4377 -13.1563 -4.5230
26 9 4.4435 -14.2412 -2.5121
27 6 2.9243 -9.5516 -0.5367
28 1 -0.4850 0.8401 0.0004
29 1 0.6242 -2.5566 -0.8904
30 1 0.6247 -2.5571 0.8896
31 1 3.1568 -3.4353 -0.0002
32 1 1.3249 -7.4676 -0.0781
33 1 4.5331 -7.2707 1.3765
34 1 6.1199 -9.1415 1.5702
35 1 5.6691 -11.2659 0.4121
36 1 3.9854 -12.7210 -0.5582
37 1 2.4674 -12.0531 -1.2046
38 1 3.7159 -11.0470 -3.0962
39 1 5.2338 -11.7149 -2.4496
40 1 2.0280 -9.6681 -1.1280
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000427862155.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:56
Heat of formation + Delta-G solvation = -212.528339 kcal
Electronic energy + Delta-G solvation = -28233.635429 eV
Core-core repulsion = 23404.787189 eV
Total energy + Delta-G solvation = -4828.848240 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-50.49891 -47.99696 -47.97572 -40.93962 -39.42573 -38.03054 -35.78132 -34.68401
-34.09329 -32.42295 -30.91518 -29.98564 -27.78721 -26.41137 -24.99139 -23.25554
-22.82509 -22.29845 -21.06791 -19.85226 -18.96815 -18.83264 -18.71076 -17.82253
-17.17486 -16.68285 -16.38344 -15.99398 -15.60555 -15.44716 -15.09893 -14.90417
-14.82422 -14.41950 -14.39030 -14.18665 -14.16700 -14.10079 -14.00019 -13.74852
-13.60992 -13.43747 -13.18015 -12.58702 -12.28735 -12.09429 -12.04280 -11.95994
-11.78143 -11.41082 -11.25743 -11.05807 -10.93531 -10.53819 -10.36473 -9.54380
-9.24659 -9.05610 -8.87216 -8.36251 -8.16600 -6.25630 -4.33435 0.91289
1.06112 1.78813 2.35601 2.55880 3.22432 3.27181 3.29140 3.31812
3.40598 3.58238 3.62955 3.71962 3.97260 4.28488 4.37644 4.40230
4.54897 4.67678 4.86670 4.91967 4.96783 5.03229 5.11029 5.14700
5.25269 5.39934 5.44858 5.69895 6.04052 6.07670 6.25644 6.28486
6.73218 6.93137 7.02394 7.14261 7.31068 7.49870 7.76972 7.82647
8.31063 8.49728 8.77410 9.32997 10.84284
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.021482 B = 0.001727 C = 0.001682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1303.097746 B =16204.591738 C =16638.038513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.066 3.934
3 Si 0.907 3.093
4 H -0.274 1.274
5 H -0.285 1.285
6 H -0.274 1.274
7 C -0.548 4.548
8 H 0.066 0.934
9 C 0.246 3.754
10 N -0.669 5.669
11 C 0.491 3.509
12 O -0.535 6.535
13 C 0.509 3.491
14 O -0.503 6.503
15 N -0.653 5.653
16 C 0.155 3.845
17 C -0.120 4.120
18 C -0.096 4.096
19 C -0.131 4.131
20 C -0.070 4.070
21 C -0.080 4.080
22 C -0.163 4.163
23 C 0.452 3.548
24 F -0.183 7.183
25 F -0.185 7.185
26 F -0.185 7.185
27 C -0.138 4.138
28 H 0.268 0.732
29 H 0.035 0.965
30 H 0.035 0.965
31 H 0.405 0.595
32 H 0.424 0.576
33 H 0.137 0.863
34 H 0.128 0.872
35 H 0.124 0.876
36 H 0.088 0.912
37 H 0.087 0.913
38 H 0.113 0.887
39 H 0.112 0.888
40 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.339 -27.033 -2.244 28.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.139 4.139
3 Si 0.734 3.266
4 H -0.199 1.199
5 H -0.210 1.210
6 H -0.200 1.200
7 C -0.586 4.586
8 H 0.084 0.916
9 C 0.127 3.873
10 N -0.318 5.318
11 C 0.269 3.731
12 O -0.414 6.414
13 C 0.292 3.708
14 O -0.376 6.376
15 N -0.300 5.300
16 C 0.060 3.940
17 C -0.140 4.140
18 C -0.115 4.115
19 C -0.149 4.149
20 C -0.071 4.071
21 C -0.118 4.118
22 C -0.201 4.201
23 C 0.398 3.602
24 F -0.165 7.165
25 F -0.166 7.166
26 F -0.166 7.166
27 C -0.159 4.159
28 H 0.078 0.922
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.239 0.761
32 H 0.262 0.738
33 H 0.155 0.845
34 H 0.146 0.854
35 H 0.142 0.858
36 H 0.106 0.894
37 H 0.106 0.894
38 H 0.131 0.869
39 H 0.131 0.869
40 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 9.118 -26.791 -2.254 28.390
hybrid contribution 0.331 0.743 -0.213 0.841
sum 9.449 -26.048 -2.468 27.819
Atomic orbital electron populations
1.69954 1.06112 1.27675 1.48436 1.24941 0.94967 0.99540 0.94422
0.86410 0.79383 0.81932 0.78854 1.19942 1.21010 1.19950 1.21155
0.93474 0.90085 1.53930 0.91583 1.19359 0.88119 0.81422 0.98437
1.46434 1.12752 1.04979 1.67677 1.19663 0.88080 0.84515 0.80844
1.90743 1.15721 1.84518 1.50434 1.20930 0.89334 0.84222 0.76277
1.90745 1.16422 1.84612 1.45809 1.43268 1.11341 1.04114 1.71237
1.17746 0.91988 0.87649 0.96584 1.21268 0.94178 1.00216 0.98327
1.21031 0.99047 0.92468 0.98918 1.21017 0.97071 0.98038 0.98813
1.19293 0.94877 0.94337 0.98553 1.20538 1.02503 0.95978 0.92759
1.22934 1.06199 0.93100 0.97838 1.20648 0.74134 0.87935 0.77529
1.93195 1.31100 1.96064 1.96142 1.93199 1.85220 1.96813 1.41417
1.93186 1.84964 1.61205 1.77259 1.20793 1.01328 0.92643 1.01097
0.92228 0.94660 0.94665 0.76060 0.73822 0.84510 0.85419 0.85826
0.89391 0.89424 0.86886 0.86918 0.85295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.21 13.29 55.43 0.74 -24.48 16
2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16
3 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16
4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 16
8 H 0.07 1.65 7.60 -52.48 -0.40 1.25 16
9 C 0.25 6.25 5.43 -5.20 -0.03 6.22 16
10 N -0.67 -14.00 5.54 -61.94 -0.34 -14.34 16
11 C 0.49 9.45 7.89 -11.63 -0.09 9.36 16
12 O -0.54 -11.44 16.48 5.49 0.09 -11.34 16
13 C 0.51 8.17 7.62 -11.63 -0.09 8.09 16
14 O -0.50 -8.64 14.16 5.48 0.08 -8.56 16
15 N -0.65 -8.38 5.32 -10.30 -0.05 -8.44 16
16 C 0.15 1.79 6.28 -83.75 -0.53 1.27 16
17 C -0.12 -1.40 8.66 -39.38 -0.34 -1.74 16
18 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16
19 C -0.13 -1.00 9.70 -39.54 -0.38 -1.38 16
20 C -0.07 -0.53 5.13 -104.65 -0.54 -1.07 16
21 C -0.08 -0.43 5.10 -27.88 -0.14 -0.58 16
22 C -0.16 -0.82 5.24 -26.73 -0.14 -0.96 16
23 C 0.45 3.01 3.16 37.16 0.12 3.13 16
24 F -0.18 -1.42 16.80 2.25 0.04 -1.38 16
25 F -0.19 -1.47 17.32 2.25 0.04 -1.44 16
26 F -0.18 -1.35 16.80 2.25 0.04 -1.31 16
27 C -0.14 -1.25 9.62 -39.38 -0.38 -1.63 16
28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
31 H 0.40 7.82 7.79 -40.82 -0.32 7.50 16
32 H 0.42 4.80 8.30 -40.82 -0.34 4.47 16
33 H 0.14 1.80 6.42 -52.48 -0.34 1.46 16
34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16
35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16
36 H 0.09 0.41 7.75 -51.93 -0.40 0.00 16
37 H 0.09 0.45 7.74 -51.93 -0.40 0.04 16
38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16
39 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16
40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16
LS Contribution 365.79 15.07 5.51 5.51
Total: -1.00 -30.77 365.79 -6.53 -37.31
By element:
Atomic # 1 Polarization: 11.05 SS G_CDS: -4.29 Total: 6.76 kcal
Atomic # 6 Polarization: 9.63 SS G_CDS: -3.35 Total: 6.27 kcal
Atomic # 7 Polarization: -47.60 SS G_CDS: 0.34 Total: -47.26 kcal
Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.91 kcal
Atomic # 9 Polarization: -4.25 SS G_CDS: 0.11 Total: -4.13 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -30.77 -6.53 -37.31 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427862155.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -175.223 kcal
(2) G-P(sol) polarization free energy of solvation -30.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.996 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) -212.528 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds