Wall clock time and date at job start Sat Apr 11 2020 07:03:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99655 * 2 1
4 4 H 1.48503 * 109.46955 * 240.00384 * 3 2 1
5 5 H 1.48491 * 109.47229 * 0.02562 * 3 2 1
6 6 H 1.48505 * 109.46819 * 120.00623 * 3 2 1
7 7 C 1.37872 * 120.00118 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99977 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00104 * 359.97438 * 7 2 1
10 10 N 1.46499 * 109.47202 * 180.02562 * 9 7 2
11 11 C 1.34775 * 119.99854 * 180.02562 * 10 9 7
12 12 O 1.21363 * 120.00209 * 359.97438 * 11 10 9
13 13 C 1.49354 * 119.99977 * 180.02562 * 11 10 9
14 14 O 1.21373 * 119.99823 * 359.97438 * 13 11 10
15 15 N 1.34775 * 119.99977 * 179.97438 * 13 11 10
16 16 C 1.39726 * 119.99883 * 185.27057 * 15 13 11
17 17 C 1.38954 * 120.07590 * 33.33822 * 16 15 13
18 18 C 1.38077 * 119.92410 * 179.97438 * 17 16 15
19 19 C 1.38310 * 120.07681 * 0.25580 * 18 17 16
20 20 C 1.38278 * 120.15081 * 359.48342 * 19 18 17
21 21 C 1.50699 * 119.96104 * 180.25944 * 20 19 18
22 22 C 1.53005 * 109.47046 * 270.26038 * 21 20 19
23 23 C 1.52999 * 109.47307 * 180.02562 * 22 21 20
24 24 F 1.39903 * 109.46977 * 59.99295 * 23 22 21
25 25 F 1.39891 * 109.47528 * 179.97438 * 23 22 21
26 26 F 1.39904 * 109.46932 * 300.00013 * 23 22 21
27 27 C 1.38111 * 120.07366 * 0.51666 * 20 19 18
28 28 H 0.97003 * 120.00080 * 359.97438 * 1 2 3
29 29 H 1.09004 * 109.46696 * 60.00585 * 9 7 2
30 30 H 1.08998 * 109.47363 * 300.00628 * 9 7 2
31 31 H 0.96998 * 119.99927 * 0.02562 * 10 9 7
32 32 H 0.97000 * 120.00335 * 5.27613 * 15 13 11
33 33 H 1.08003 * 120.03857 * 359.97438 * 17 16 15
34 34 H 1.08001 * 119.96156 * 179.97438 * 18 17 16
35 35 H 1.07998 * 119.92206 * 179.72530 * 19 18 17
36 36 H 1.08999 * 109.47187 * 30.25079 * 21 20 19
37 37 H 1.08997 * 109.47354 * 150.25575 * 21 20 19
38 38 H 1.09001 * 109.47044 * 299.99807 * 22 21 20
39 39 H 1.08997 * 109.47423 * 59.99579 * 22 21 20
40 40 H 1.08006 * 120.03571 * 179.76463 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2126
5 1 1.2841 2.7464 0.0006
6 1 3.1030 1.6964 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 7 2.2031 -3.6126 -0.0005
11 6 1.7539 -4.8833 -0.0011
12 8 0.5607 -5.1051 -0.0011
13 6 2.7244 -6.0185 -0.0005
14 8 3.9177 -5.7966 0.0000
15 7 2.2752 -7.2891 -0.0005
16 6 3.1783 -8.3494 0.1112
17 6 4.3324 -8.2040 0.8713
18 6 5.2225 -9.2540 0.9799
19 6 4.9690 -10.4477 0.3290
20 6 3.8189 -10.5977 -0.4238
21 6 3.5441 -11.9023 -1.1264
22 6 4.1572 -11.8657 -2.5278
23 6 3.8777 -13.1899 -3.2415
24 9 2.4957 -13.3829 -3.3418
25 9 4.4377 -13.1563 -4.5230
26 9 4.4435 -14.2412 -2.5121
27 6 2.9243 -9.5516 -0.5367
28 1 -0.4850 0.8401 0.0004
29 1 0.6242 -2.5566 -0.8904
30 1 0.6247 -2.5571 0.8896
31 1 3.1568 -3.4353 -0.0002
32 1 1.3249 -7.4676 -0.0781
33 1 4.5331 -7.2707 1.3765
34 1 6.1199 -9.1415 1.5702
35 1 5.6691 -11.2659 0.4121
36 1 3.9854 -12.7210 -0.5582
37 1 2.4674 -12.0531 -1.2046
38 1 3.7159 -11.0470 -3.0962
39 1 5.2338 -11.7149 -2.4496
40 1 2.0280 -9.6681 -1.1280
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000427862155.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:55
Heat of formation + Delta-G solvation = -232.170893 kcal
Electronic energy + Delta-G solvation = -28234.487194 eV
Core-core repulsion = 23404.787189 eV
Total energy + Delta-G solvation = -4829.700005 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-51.03941 -48.55545 -48.51930 -42.13180 -40.52319 -39.36374 -36.87180 -36.13188
-35.05370 -34.37065 -31.56169 -30.85569 -29.68469 -26.97807 -26.49707 -24.46082
-23.79212 -23.13181 -22.21260 -21.11670 -20.19480 -19.48024 -19.37910 -18.42684
-18.29996 -18.10588 -17.56794 -17.07867 -16.94199 -16.90731 -16.33759 -15.93082
-15.60877 -15.46793 -15.24150 -15.06304 -14.96667 -14.76362 -14.70390 -14.66633
-14.38797 -14.22364 -14.20887 -14.07791 -13.90131 -13.24471 -13.11283 -12.97786
-12.71469 -12.70731 -12.51653 -12.25842 -12.16973 -11.96980 -11.56780 -11.44574
-10.84683 -10.72275 -10.08213 -9.78245 -9.20752 -8.32162 -6.48566 -0.08236
0.35681 0.60683 1.25622 1.44470 1.46955 1.55654 1.86935 2.05708
2.35373 2.67797 2.73054 2.91528 3.03088 3.15037 3.15446 3.40778
3.81880 3.90400 4.07706 4.10358 4.26705 4.38345 4.44060 4.49251
4.56599 4.82526 4.94661 4.96245 5.09957 5.15666 5.19995 5.24925
5.27805 5.49059 5.52616 5.60422 5.76331 5.91341 6.03047 6.45137
6.56312 6.71656 6.96998 7.24408 8.79112
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.021482 B = 0.001727 C = 0.001682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1303.097746 B =16204.591738 C =16638.038513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C 0.010 3.990
3 Si 0.983 3.017
4 H -0.264 1.264
5 H -0.283 1.283
6 H -0.264 1.264
7 C -0.563 4.563
8 H 0.080 0.920
9 C 0.263 3.737
10 N -0.672 5.672
11 C 0.493 3.507
12 O -0.558 6.558
13 C 0.520 3.480
14 O -0.516 6.516
15 N -0.636 5.636
16 C 0.124 3.876
17 C -0.142 4.142
18 C -0.100 4.100
19 C -0.120 4.120
20 C -0.063 4.063
21 C -0.077 4.077
22 C -0.157 4.157
23 C 0.452 3.548
24 F -0.191 7.191
25 F -0.194 7.194
26 F -0.188 7.188
27 C -0.134 4.134
28 H 0.271 0.729
29 H 0.006 0.994
30 H 0.005 0.995
31 H 0.413 0.587
32 H 0.430 0.570
33 H 0.114 0.886
34 H 0.145 0.855
35 H 0.155 0.845
36 H 0.102 0.898
37 H 0.092 0.908
38 H 0.117 0.883
39 H 0.126 0.874
40 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.262 -28.617 -2.436 30.850
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.190 4.190
3 Si 0.806 3.194
4 H -0.189 1.189
5 H -0.208 1.208
6 H -0.189 1.189
7 C -0.601 4.601
8 H 0.098 0.902
9 C 0.141 3.859
10 N -0.322 5.322
11 C 0.273 3.727
12 O -0.438 6.438
13 C 0.302 3.698
14 O -0.390 6.390
15 N -0.282 5.282
16 C 0.031 3.969
17 C -0.162 4.162
18 C -0.119 4.119
19 C -0.138 4.138
20 C -0.064 4.064
21 C -0.114 4.114
22 C -0.195 4.195
23 C 0.398 3.602
24 F -0.173 7.173
25 F -0.176 7.176
26 F -0.170 7.170
27 C -0.154 4.154
28 H 0.080 0.920
29 H 0.024 0.976
30 H 0.023 0.977
31 H 0.250 0.750
32 H 0.269 0.731
33 H 0.133 0.867
34 H 0.163 0.837
35 H 0.172 0.828
36 H 0.120 0.880
37 H 0.111 0.889
38 H 0.135 0.865
39 H 0.144 0.856
40 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 11.059 -28.443 -2.445 30.615
hybrid contribution -0.276 1.020 -0.152 1.067
sum 10.784 -27.424 -2.596 29.582
Atomic orbital electron populations
1.70093 1.07959 1.28810 1.49387 1.25969 0.95825 1.03583 0.93671
0.85236 0.77986 0.76797 0.79410 1.18873 1.20781 1.18875 1.21535
0.94285 0.90560 1.53726 0.90199 1.18836 0.88317 0.83092 0.95618
1.46158 1.12457 1.04892 1.68708 1.20218 0.88421 0.84882 0.79202
1.90721 1.17113 1.85008 1.50925 1.20063 0.88163 0.84362 0.77196
1.90746 1.16362 1.84798 1.47141 1.43088 1.12054 1.03298 1.69809
1.17955 0.92247 0.88003 0.98677 1.21263 0.95231 1.00415 0.99270
1.21268 0.99103 0.92301 0.99183 1.21402 0.97245 0.98056 0.97089
1.19536 0.94266 0.94638 0.97959 1.20555 1.03123 0.94982 0.92769
1.22933 1.07106 0.92072 0.97373 1.20877 0.73640 0.88446 0.77250
1.93181 1.31778 1.96159 1.96168 1.93182 1.85332 1.96866 1.42190
1.93179 1.84973 1.61584 1.77238 1.21016 1.02172 0.91799 1.00430
0.92028 0.97637 0.97674 0.75029 0.73101 0.86749 0.83696 0.82759
0.87991 0.88923 0.86493 0.85574 0.83659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.92 13.29 21.45 0.28 -53.64 16
2 C 0.01 0.55 5.46 84.65 0.46 1.01 16
3 Si 0.98 41.83 29.54 68.60 2.03 43.86 16
4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16
6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
7 C -0.56 -30.29 9.28 25.60 0.24 -30.05 16
8 H 0.08 3.98 7.60 -2.91 -0.02 3.95 16
9 C 0.26 13.94 5.43 85.63 0.46 14.41 16
10 N -0.67 -29.06 5.54 -468.24 -2.59 -31.66 16
11 C 0.49 19.58 7.89 87.24 0.69 20.26 16
12 O -0.56 -24.67 16.48 -3.29 -0.05 -24.72 16
13 C 0.52 16.93 7.62 87.24 0.67 17.60 16
14 O -0.52 -17.91 14.16 -3.32 -0.05 -17.96 16
15 N -0.64 -16.24 5.32 -304.84 -1.62 -17.87 16
16 C 0.12 2.77 6.28 38.22 0.24 3.01 16
17 C -0.14 -3.24 8.66 22.40 0.19 -3.05 16
18 C -0.10 -1.62 10.04 22.25 0.22 -1.40 16
19 C -0.12 -1.41 9.70 22.30 0.22 -1.19 16
20 C -0.06 -0.75 5.13 -19.89 -0.10 -0.86 16
21 C -0.08 -0.56 5.10 29.85 0.15 -0.41 16
22 C -0.16 -1.11 5.24 30.60 0.16 -0.95 16
23 C 0.45 5.03 3.16 71.98 0.23 5.26 16
24 F -0.19 -2.62 16.80 44.97 0.76 -1.86 16
25 F -0.19 -2.77 17.32 44.97 0.78 -2.00 16
26 F -0.19 -2.32 16.80 44.97 0.76 -1.56 16
27 C -0.13 -2.13 9.62 22.40 0.22 -1.92 16
28 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16
29 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16
30 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16
31 H 0.41 16.30 7.79 -92.71 -0.72 15.58 16
32 H 0.43 9.67 8.30 -92.71 -0.77 8.90 16
33 H 0.11 3.09 6.42 -2.91 -0.02 3.07 16
34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16
35 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16
36 H 0.10 0.52 7.75 -2.39 -0.02 0.50 16
37 H 0.09 0.64 7.74 -2.39 -0.02 0.62 16
38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16
39 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16
40 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16
Total: -1.00 -67.94 365.79 3.96 -63.98
By element:
Atomic # 1 Polarization: 22.06 SS G_CDS: -0.37 Total: 21.70 kcal
Atomic # 6 Polarization: 17.68 SS G_CDS: 4.04 Total: 21.73 kcal
Atomic # 7 Polarization: -99.23 SS G_CDS: -3.93 Total: -103.16 kcal
Atomic # 8 Polarization: -42.58 SS G_CDS: -0.10 Total: -42.68 kcal
Atomic # 9 Polarization: -7.71 SS G_CDS: 2.29 Total: -5.42 kcal
Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal
Total: -67.94 3.96 -63.98 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427862155.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -168.192 kcal
(2) G-P(sol) polarization free energy of solvation -67.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -232.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds