Wall clock time and date at job start Sat Apr 11 2020 07:04:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31296 * 1
3 3 Si 1.86805 * 119.99820 * 2 1
4 4 H 1.48497 * 109.47185 * 269.99652 * 3 2 1
5 5 H 1.48497 * 109.46994 * 29.99890 * 3 2 1
6 6 H 1.48498 * 109.47015 * 149.99870 * 3 2 1
7 7 C 1.38979 * 120.00380 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00252 * 180.02562 * 7 2 1
9 9 N 1.37318 * 120.00217 * 0.02562 * 7 2 1
10 10 C 1.36509 * 126.07699 * 179.97438 * 9 7 2
11 11 C 1.35670 * 107.51165 * 180.02562 * 10 9 7
12 12 N 1.40604 * 126.07951 * 180.02562 * 11 10 9
13 13 C 1.34783 * 119.99688 * 218.06092 * 12 11 10
14 14 S 1.71197 * 119.99746 * 355.79307 * 13 12 11
15 15 N 1.34778 * 119.99962 * 175.79308 * 13 12 11
16 16 C 1.46496 * 119.99783 * 180.02562 * 15 13 12
17 17 H 1.09001 * 109.44022 * 324.99870 * 16 15 13
18 18 C 1.53077 * 109.43527 * 205.08591 * 16 15 13
19 19 C 1.53409 * 108.29207 * 191.75001 * 18 16 15
20 20 O 1.42830 * 108.37299 * 64.74355 * 19 18 16
21 21 C 1.35845 * 117.86096 * 310.85384 * 20 19 18
22 22 C 1.39152 * 118.49777 * 197.02292 * 21 20 19
23 23 C 1.37963 * 120.21510 * 180.18222 * 22 21 20
24 24 C 1.38290 * 119.96151 * 0.02562 * 23 22 21
25 25 C 1.38110 * 119.98093 * 359.92160 * 24 23 22
26 26 C 1.38309 * 121.79344 * 17.10978 * 21 20 19
27 27 C 1.40655 * 107.83582 * 0.26099 * 11 10 9
28 28 N 1.30913 * 108.38968 * 359.55515 * 27 11 10
29 29 H 0.96990 * 120.00052 * 0.02562 * 1 2 3
30 30 H 1.08005 * 126.24360 * 0.07017 * 10 9 7
31 31 H 0.97002 * 120.00613 * 38.34203 * 12 11 10
32 32 H 0.97000 * 119.99912 * 0.02562 * 15 13 12
33 33 H 1.09006 * 109.69889 * 311.44516 * 18 16 15
34 34 H 1.08996 * 109.70052 * 72.00644 * 18 16 15
35 35 H 1.08995 * 109.68241 * 184.46734 * 19 18 16
36 36 H 1.09008 * 109.68312 * 304.98687 * 19 18 16
37 37 H 1.08001 * 119.88903 * 0.15354 * 22 21 20
38 38 H 1.08001 * 120.02278 * 180.02562 * 23 22 21
39 39 H 1.08000 * 120.01534 * 179.90353 * 24 23 22
40 40 H 1.07998 * 119.83978 * 180.02562 * 25 24 23
41 41 H 1.07994 * 125.80675 * 179.73544 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3130 0.0000 0.0000
3 14 2.2469 1.6178 0.0000
4 1 2.4945 2.0465 -1.4000
5 1 1.4443 2.6527 0.7000
6 1 3.5445 1.4403 0.7001
7 6 2.0079 -1.2035 0.0005
8 1 3.0880 -1.2035 0.0010
9 7 1.3215 -2.3928 0.0005
10 6 1.8752 -3.6406 0.0005
11 6 0.8581 -4.5385 0.0000
12 7 0.9895 -5.9384 0.0003
13 6 0.1379 -6.6953 -0.7199
14 16 -1.1686 -5.9616 -1.5480
15 7 0.3149 -8.0297 -0.7879
16 6 -0.6104 -8.8522 -1.5711
17 1 -1.6152 -8.4358 -1.4999
18 6 -0.6111 -10.2812 -1.0222
19 6 -1.3460 -11.1813 -2.0238
20 8 -0.5943 -11.2113 -3.2379
21 6 -0.1907 -10.0257 -3.7641
22 6 0.2152 -9.9937 -5.0947
23 6 0.6356 -8.8094 -5.6641
24 6 0.6545 -7.6496 -4.9111
25 6 0.2513 -7.6774 -3.5905
26 6 -0.1732 -8.8638 -3.0140
27 6 -0.3510 -3.8199 -0.0065
28 7 -0.0714 -2.5410 0.0000
29 1 -0.4850 0.8400 -0.0004
30 1 2.9303 -3.8709 0.0016
31 1 1.6904 -6.3597 0.5219
32 1 1.0549 -8.4453 -0.3184
33 1 0.4149 -10.6284 -0.9001
34 1 -1.1239 -10.3051 -0.0607
35 1 -1.4294 -12.1897 -1.6186
36 1 -2.3408 -10.7799 -2.2170
37 1 0.2017 -10.8990 -5.6834
38 1 0.9496 -8.7881 -6.6972
39 1 0.9849 -6.7224 -5.3555
40 1 0.2666 -6.7702 -3.0048
41 1 -1.3416 -4.2500 -0.0125
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000741482662.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:12
Heat of formation + Delta-G solvation = 105.332532 kcal
Electronic energy + Delta-G solvation = -26843.089761 eV
Core-core repulsion = 23044.927365 eV
Total energy + Delta-G solvation = -3798.162396 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 344.105 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.98243 -39.77926 -38.30731 -37.44886 -35.65373 -33.49004 -32.14286 -30.61392
-30.31105 -30.12438 -27.90332 -25.65837 -24.75830 -23.85240 -23.42004 -22.39577
-20.75842 -20.49485 -19.76498 -18.32257 -17.89250 -17.52108 -16.81137 -16.53417
-16.13201 -15.53195 -15.19165 -14.92897 -14.78093 -14.50489 -14.11356 -13.88467
-13.74616 -13.44822 -13.29758 -13.04270 -12.92197 -12.47652 -12.10910 -11.74994
-11.66530 -11.46871 -11.29591 -11.22880 -10.99996 -10.92881 -10.70897 -10.63881
-10.56880 -9.83193 -9.26323 -8.82075 -8.75364 -8.19562 -8.14829 -7.42253
-6.93113 -6.61869 -6.46601 -4.29899 1.31987 1.53267 1.70954 2.35911
2.87075 2.94635 3.02901 3.07424 3.15075 3.50895 3.69900 3.87675
3.92098 4.27277 4.31042 4.43798 4.52484 4.78101 4.83331 4.91974
4.96782 5.09907 5.20021 5.30846 5.42383 5.47473 5.56528 5.67440
5.80065 6.09812 6.15365 6.18494 6.33428 6.37627 6.59128 6.62921
6.74298 6.85351 6.87860 7.06561 7.15600 7.37648 7.39113 7.75916
7.80313 8.19856 8.62697 9.28339 9.59495 10.33338
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.021681 B = 0.002615 C = 0.002468
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1291.118464 B =10705.429190 C =11343.011493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.763 5.763
2 C 0.048 3.952
3 Si 0.935 3.065
4 H -0.270 1.270
5 H -0.275 1.275
6 H -0.264 1.264
7 C -0.323 4.323
8 H 0.117 0.883
9 N -0.138 5.138
10 C -0.062 4.062
11 C -0.094 4.094
12 N -0.562 5.562
13 C 0.543 3.457
14 S -0.631 6.631
15 N -0.692 5.692
16 C 0.198 3.802
17 H 0.126 0.874
18 C -0.168 4.168
19 C 0.069 3.931
20 O -0.319 6.319
21 C 0.134 3.866
22 C -0.163 4.163
23 C -0.084 4.084
24 C -0.158 4.158
25 C -0.060 4.060
26 C -0.175 4.175
27 C 0.030 3.970
28 N -0.265 5.265
29 H 0.277 0.723
30 H 0.144 0.856
31 H 0.393 0.607
32 H 0.393 0.607
33 H 0.080 0.920
34 H 0.092 0.908
35 H 0.111 0.889
36 H 0.070 0.930
37 H 0.125 0.875
38 H 0.124 0.876
39 H 0.122 0.878
40 H 0.156 0.844
41 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.840 -19.829 -2.288 20.161
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.388 5.388
2 C -0.170 4.170
3 Si 0.758 3.242
4 H -0.195 1.195
5 H -0.200 1.200
6 H -0.188 1.188
7 C -0.455 4.455
8 H 0.134 0.866
9 N 0.099 4.901
10 C -0.217 4.217
11 C -0.201 4.201
12 N -0.179 5.179
13 C 0.183 3.817
14 S -0.502 6.502
15 N -0.324 5.324
16 C 0.093 3.907
17 H 0.144 0.856
18 C -0.206 4.206
19 C -0.007 4.007
20 O -0.234 6.234
21 C 0.088 3.912
22 C -0.182 4.182
23 C -0.102 4.102
24 C -0.176 4.176
25 C -0.080 4.080
26 C -0.178 4.178
27 C -0.150 4.150
28 N -0.093 5.093
29 H 0.087 0.913
30 H 0.162 0.838
31 H 0.228 0.772
32 H 0.229 0.771
33 H 0.099 0.901
34 H 0.111 0.889
35 H 0.129 0.871
36 H 0.089 0.911
37 H 0.143 0.857
38 H 0.142 0.858
39 H 0.140 0.860
40 H 0.173 0.827
41 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 1.227 -18.020 -2.901 18.293
hybrid contribution 2.160 -0.813 0.939 2.492
sum 3.387 -18.833 -1.962 19.235
Atomic orbital electron populations
1.70208 1.06124 1.28221 1.34266 1.25656 0.95722 1.00325 0.95327
0.85823 0.79372 0.79862 0.79096 1.19475 1.19995 1.18801 1.19901
0.91703 0.80510 1.53398 0.86570 1.44631 1.04375 1.03199 1.37930
1.21294 0.96754 0.85490 1.18118 1.16878 0.94630 0.78593 1.29993
1.41453 1.29074 1.05832 1.41529 1.22296 0.91440 0.83668 0.84301
1.93294 1.24813 1.75169 1.56949 1.44795 1.31666 1.04027 1.51939
1.19900 0.95477 0.89134 0.86188 0.85635 1.22526 1.02986 0.94566
1.00513 1.22888 0.94195 1.01218 0.82398 1.85966 1.69268 1.27945
1.40202 1.18655 0.96373 0.83868 0.92261 1.20448 1.06409 0.99049
0.92305 1.20957 0.97702 0.92071 0.99476 1.21148 1.03224 0.98319
0.94933 1.22118 0.91991 0.98378 0.95477 1.19989 1.08082 0.93653
0.96039 1.24263 0.98202 0.90479 1.02027 1.78386 0.89643 1.14870
1.26398 0.91272 0.83847 0.77170 0.77130 0.90100 0.88931 0.87084
0.91133 0.85666 0.85819 0.86041 0.82746 0.80374
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -20.86 11.81 55.49 0.66 -20.20 16
2 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16
3 Si 0.93 18.53 29.55 -169.99 -5.02 13.50 16
4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16
5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16
6 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16
7 C -0.32 -8.30 10.25 -14.82 -0.15 -8.45 16
8 H 0.12 2.67 7.83 -52.48 -0.41 2.25 16
9 N -0.14 -3.64 3.74 -11.41 -0.04 -3.68 16
10 C -0.06 -1.40 11.49 -16.39 -0.19 -1.59 16
11 C -0.09 -2.02 6.42 -83.84 -0.54 -2.56 16
12 N -0.56 -9.04 5.47 -11.53 -0.06 -9.10 16
13 C 0.54 8.66 6.68 -86.91 -0.58 8.08 16
14 S -0.63 -12.97 21.53 -107.50 -2.31 -15.29 16
15 N -0.69 -7.99 4.87 -56.58 -0.28 -8.27 16
16 C 0.20 2.29 2.54 -69.01 -0.18 2.11 16
17 H 0.13 1.72 6.81 -51.93 -0.35 1.36 16
18 C -0.17 -1.29 5.67 -26.48 -0.15 -1.44 16
19 C 0.07 0.53 7.03 37.37 0.26 0.79 16
20 O -0.32 -3.54 10.27 -19.25 -0.20 -3.73 16
21 C 0.13 1.69 6.47 -39.22 -0.25 1.44 16
22 C -0.16 -1.97 9.94 -39.34 -0.39 -2.36 16
23 C -0.08 -1.01 10.04 -39.66 -0.40 -1.41 16
24 C -0.16 -2.23 10.04 -39.61 -0.40 -2.62 16
25 C -0.06 -0.93 8.61 -39.51 -0.34 -1.27 16
26 C -0.18 -2.36 5.56 -104.44 -0.58 -2.94 16
27 C 0.03 0.74 10.04 -17.03 -0.17 0.57 16
28 N -0.26 -7.43 10.40 30.80 0.32 -7.11 16
29 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16
30 H 0.14 2.71 8.06 -52.48 -0.42 2.29 16
31 H 0.39 4.74 8.84 -40.82 -0.36 4.38 16
32 H 0.39 3.29 8.60 -40.82 -0.35 2.94 16
33 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16
34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
35 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16
37 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16
38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16
39 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16
40 H 0.16 2.81 3.91 -36.93 -0.14 2.66 16
41 H 0.18 4.41 6.17 -46.72 -0.29 4.13 16
LS Contribution 350.46 15.07 5.28 5.28
Total: -1.00 -33.48 350.46 -10.23 -43.72
By element:
Atomic # 1 Polarization: 19.84 SS G_CDS: -4.42 Total: 15.42 kcal
Atomic # 6 Polarization: -6.38 SS G_CDS: -4.15 Total: -10.53 kcal
Atomic # 7 Polarization: -48.96 SS G_CDS: 0.59 Total: -48.36 kcal
Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.73 kcal
Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.50 kcal
Atomic # 16 Polarization: -12.97 SS G_CDS: -2.31 Total: -15.29 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -33.48 -10.23 -43.72 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000741482662.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.049 kcal
(2) G-P(sol) polarization free energy of solvation -33.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds