Wall clock time and date at job start Sat Apr 11 2020 07:03:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.46500 * 119.99974 * 2 1
4 4 C 1.50706 * 109.46624 * 269.99550 * 3 2 1
5 5 H 1.07996 * 119.99877 * 0.02562 * 4 3 2
6 6 C 1.37875 * 119.99550 * 180.02562 * 4 3 2
7 7 N 1.31512 * 119.99784 * 180.02562 * 6 4 3
8 8 Si 1.86798 * 120.00239 * 359.97438 * 6 4 3
9 9 H 1.48500 * 109.46757 * 90.00295 * 8 6 4
10 10 H 1.48499 * 109.47031 * 209.99975 * 8 6 4
11 11 H 1.48494 * 109.47211 * 330.00330 * 8 6 4
12 12 C 1.34776 * 119.99666 * 179.97438 * 2 1 3
13 13 O 1.21582 * 119.99285 * 180.02562 * 12 2 1
14 14 N 1.34769 * 120.00195 * 0.02562 * 12 2 1
15 15 C 1.39599 * 119.99937 * 184.48773 * 14 12 2
16 16 C 1.38999 * 119.93915 * 325.21119 * 15 14 12
17 17 C 1.37717 * 120.14247 * 180.27935 * 16 15 14
18 18 C 1.39789 * 120.01426 * 359.97438 * 17 16 15
19 19 C 1.47452 * 120.06344 * 180.02562 * 18 17 16
20 20 O 1.21507 * 120.00152 * 179.97438 * 19 18 17
21 21 O 1.34756 * 119.99907 * 359.97438 * 19 18 17
22 22 C 1.39810 * 119.87629 * 0.02562 * 18 17 16
23 23 C 1.38093 * 119.85862 * 359.97438 * 22 18 17
24 24 O 1.35988 * 120.00384 * 179.97438 * 23 22 18
25 25 C 1.42899 * 117.00519 * 0.02562 * 24 23 22
26 26 F 1.39898 * 109.47141 * 300.00251 * 25 24 23
27 27 F 1.39902 * 109.46581 * 59.99893 * 25 24 23
28 28 H 1.09000 * 109.47405 * 270.00527 * 1 2 3
29 29 H 1.09003 * 109.46756 * 30.00712 * 1 2 3
30 30 H 1.09002 * 109.46791 * 150.00059 * 1 2 3
31 31 H 1.09005 * 109.47304 * 29.99136 * 3 2 1
32 32 H 1.08997 * 109.47331 * 149.99646 * 3 2 1
33 33 H 0.96999 * 120.00385 * 180.02562 * 7 6 4
34 34 H 0.97003 * 120.00126 * 4.49520 * 14 12 2
35 35 H 1.08004 * 119.92719 * 0.27578 * 16 15 14
36 36 H 1.08002 * 119.99261 * 180.02562 * 17 16 15
37 37 H 0.96698 * 117.00143 * 180.02562 * 21 19 18
38 38 H 1.07996 * 120.06920 * 180.02562 * 22 18 17
39 39 H 1.09000 * 109.47176 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4488 1.7036 -1.4209
5 1 2.0975 1.0959 -2.2417
6 6 3.1270 2.8773 -1.6729
7 7 3.3458 3.2571 -2.9128
8 14 3.7339 3.9286 -0.2531
9 1 5.1070 3.5068 0.1235
10 1 3.7498 5.3552 -0.6651
11 1 2.8273 3.7596 0.9108
12 6 2.1389 -1.1672 0.0005
13 8 3.3547 -1.1672 0.0010
14 7 1.4650 -2.3344 0.0005
15 6 2.1597 -3.5415 0.0957
16 6 3.4071 -3.6730 -0.5032
17 6 4.0936 -4.8637 -0.4169
18 6 3.5366 -5.9434 0.2745
19 6 4.2709 -7.2187 0.3682
20 8 3.7859 -8.1563 0.9698
21 8 5.4799 -7.3442 -0.2136
22 6 2.2820 -5.8119 0.8772
23 6 1.5981 -4.6155 0.7874
24 8 0.3774 -4.4845 1.3720
25 6 -0.1369 -5.6247 2.0631
26 9 -0.2606 -6.6946 1.1703
27 9 0.7385 -5.9779 3.0957
28 1 -0.3634 0.0001 1.0276
29 1 -0.3633 0.8900 -0.5140
30 1 -0.3633 -0.8900 -0.5138
31 1 1.6084 2.0285 0.5137
32 1 3.1499 1.1385 0.5139
33 1 3.8233 4.0826 -3.0901
34 1 0.4972 -2.3357 -0.0657
35 1 3.8389 -2.8395 -1.0375
36 1 5.0629 -4.9631 -0.8828
37 1 5.9228 -8.1993 -0.1256
38 1 1.8489 -6.6439 1.4125
39 1 -1.1148 -5.3857 2.4811
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000830723022.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:48
Heat of formation + Delta-G solvation = -213.745986 kcal
Electronic energy + Delta-G solvation = -30241.776189 eV
Core-core repulsion = 25400.502359 eV
Total energy + Delta-G solvation = -4841.273831 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.106 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.64313 -47.62876 -41.03451 -40.16209 -39.32158 -37.47457 -36.25430 -35.28088
-34.64474 -32.56785 -30.65928 -30.23017 -28.37380 -26.57112 -26.18391 -24.65509
-22.81668 -22.58320 -21.53504 -19.67288 -19.48903 -18.79498 -18.20482 -17.96653
-17.64960 -17.06282 -17.02993 -17.00018 -15.92935 -15.77432 -15.23016 -15.08480
-14.79432 -14.73619 -14.24062 -14.08584 -13.95292 -13.91496 -13.79902 -13.45716
-13.25686 -12.89328 -12.76010 -12.57272 -12.41523 -12.24894 -12.12281 -11.73498
-11.57087 -11.52177 -11.03631 -10.82499 -10.58445 -10.42610 -10.18915 -9.67527
-9.47872 -8.88868 -8.63792 -8.22746 -7.78103 -6.13564 -4.13204 0.46731
1.12952 2.18418 2.33900 2.77956 2.88661 3.17503 3.26468 3.32293
3.34663 3.41862 3.73808 3.97458 4.19968 4.31602 4.35251 4.58959
4.77367 4.85313 4.95689 5.14782 5.20053 5.35938 5.57033 5.68151
5.76881 5.94518 6.01759 6.08941 6.26002 6.35408 6.40188 6.48636
6.78173 6.90678 7.10014 7.31272 7.54261 7.71341 8.26091 8.40821
8.87824 8.95260 9.45953 10.99645
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.014521 B = 0.003009 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1927.734452 B = 9304.670005 C =10660.025512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.603 5.603
3 C 0.230 3.770
4 C -0.533 4.533
5 H 0.075 0.925
6 C 0.074 3.926
7 N -0.896 5.896
8 Si 0.876 3.124
9 H -0.273 1.273
10 H -0.285 1.285
11 H -0.266 1.266
12 C 0.701 3.299
13 O -0.564 6.564
14 N -0.685 5.685
15 C 0.216 3.784
16 C -0.110 4.110
17 C -0.054 4.054
18 C -0.130 4.130
19 C 0.533 3.467
20 O -0.518 6.518
21 O -0.509 6.509
22 C -0.106 4.106
23 C 0.052 3.948
24 O -0.318 6.318
25 C 0.411 3.589
26 F -0.198 7.198
27 F -0.197 7.197
28 H 0.049 0.951
29 H 0.083 0.917
30 H 0.054 0.946
31 H 0.034 0.966
32 H 0.040 0.960
33 H 0.265 0.735
34 H 0.409 0.591
35 H 0.168 0.832
36 H 0.147 0.853
37 H 0.413 0.587
38 H 0.149 0.851
39 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.211 -19.186 8.827 22.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.338 5.338
3 C 0.109 3.891
4 C -0.571 4.571
5 H 0.093 0.907
6 C -0.129 4.129
7 N -0.534 5.534
8 Si 0.703 3.297
9 H -0.198 1.198
10 H -0.211 1.211
11 H -0.191 1.191
12 C 0.403 3.597
13 O -0.440 6.440
14 N -0.334 5.334
15 C 0.117 3.883
16 C -0.130 4.130
17 C -0.073 4.073
18 C -0.132 4.132
19 C 0.379 3.621
20 O -0.408 6.408
21 O -0.321 6.321
22 C -0.125 4.125
23 C 0.006 3.994
24 O -0.236 6.236
25 C 0.321 3.679
26 F -0.180 7.180
27 F -0.178 7.178
28 H 0.067 0.933
29 H 0.102 0.898
30 H 0.072 0.928
31 H 0.052 0.948
32 H 0.058 0.942
33 H 0.075 0.925
34 H 0.247 0.753
35 H 0.185 0.815
36 H 0.164 0.836
37 H 0.272 0.728
38 H 0.167 0.833
39 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -6.713 -18.599 8.856 21.666
hybrid contribution 0.107 -0.259 0.686 0.741
sum -6.606 -18.857 9.543 22.143
Atomic orbital electron populations
1.21660 0.80899 1.02939 1.00700 1.47147 1.06007 1.05594 1.75018
1.19667 0.92318 0.78572 0.98512 1.21327 1.37259 1.07300 0.91222
0.90699 1.24843 0.95174 0.97306 0.95595 1.69890 1.41249 1.23587
1.18671 0.86853 0.80204 0.79796 0.82830 1.19816 1.21053 1.19061
1.15830 0.85485 0.79961 0.78446 1.90893 1.11173 1.85387 1.56542
1.42797 1.10625 1.03217 1.76784 1.17123 0.93189 0.83609 0.94409
1.21459 0.93454 0.98821 0.99291 1.21403 0.99803 0.90780 0.95360
1.18633 0.95480 0.92520 1.06567 1.20703 0.78952 0.87772 0.74719
1.90887 1.68303 1.40944 1.40714 1.84583 1.32381 1.43164 1.71971
1.21278 0.94571 0.96366 1.00308 1.18271 0.86648 0.95063 0.99380
1.86589 1.32508 1.37299 1.67176 1.23378 0.92601 0.75421 0.76484
1.93113 1.96289 1.58752 1.69801 1.93118 1.73126 1.92095 1.59510
0.93278 0.89838 0.92781 0.94844 0.94232 0.92483 0.75281 0.81469
0.83566 0.72816 0.83325 0.80044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.14 10.24 59.85 0.61 1.76 16
2 N -0.60 -11.75 2.86 -188.73 -0.54 -12.29 16
3 C 0.23 5.36 4.23 -5.19 -0.02 5.34 16
4 C -0.53 -14.72 9.94 -34.44 -0.34 -15.06 16
5 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16
6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16
7 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16
8 Si 0.88 20.90 27.47 -169.99 -4.67 16.24 16
9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
11 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16
12 C 0.70 13.73 8.12 -86.92 -0.71 13.03 16
13 O -0.56 -13.04 13.31 5.29 0.07 -12.97 16
14 N -0.69 -10.40 5.05 -14.11 -0.07 -10.47 16
15 C 0.22 3.20 6.32 -83.55 -0.53 2.67 16
16 C -0.11 -1.65 8.67 -39.49 -0.34 -2.00 16
17 C -0.05 -0.70 9.60 -39.19 -0.38 -1.08 16
18 C -0.13 -1.69 5.87 -104.98 -0.62 -2.31 16
19 C 0.53 6.58 8.26 34.48 0.28 6.87 16
20 O -0.52 -7.61 17.12 -19.27 -0.33 -7.94 16
21 O -0.51 -4.60 12.67 -40.64 -0.51 -5.11 16
22 C -0.11 -1.40 7.80 -39.05 -0.30 -1.70 16
23 C 0.05 0.68 6.50 -39.14 -0.25 0.43 16
24 O -0.32 -3.38 9.97 -19.70 -0.20 -3.58 16
25 C 0.41 3.25 5.98 101.05 0.60 3.85 16
26 F -0.20 -1.89 15.58 2.25 0.04 -1.86 16
27 F -0.20 -2.00 15.58 2.25 0.04 -1.96 16
28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
29 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16
30 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16
31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16
32 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16
33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
34 H 0.41 5.01 6.24 -40.82 -0.25 4.76 16
35 H 0.17 2.89 6.17 -52.48 -0.32 2.56 16
36 H 0.15 1.60 7.60 -52.49 -0.40 1.20 16
37 H 0.41 1.75 9.11 45.56 0.42 2.17 16
38 H 0.15 1.96 4.66 -52.49 -0.24 1.71 16
39 H 0.18 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 346.10 15.07 5.22 5.22
Total: -1.00 -36.52 346.10 -4.99 -41.51
By element:
Atomic # 1 Polarization: 8.32 SS G_CDS: -2.71 Total: 5.60 kcal
Atomic # 6 Polarization: 15.87 SS G_CDS: -2.09 Total: 13.78 kcal
Atomic # 7 Polarization: -49.09 SS G_CDS: 0.16 Total: -48.92 kcal
Atomic # 8 Polarization: -28.63 SS G_CDS: -0.97 Total: -29.60 kcal
Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.82 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.24 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -36.52 -4.99 -41.51 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000830723022.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -172.235 kcal
(2) G-P(sol) polarization free energy of solvation -36.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.754 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -213.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds