Wall clock time and date at job start Sat Apr 11 2020 07:03:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.46500 * 119.99974 * 2 1
4 4 C 1.50706 * 109.46624 * 269.99550 * 3 2 1
5 5 H 1.07996 * 119.99877 * 0.02562 * 4 3 2
6 6 C 1.37875 * 119.99550 * 180.02562 * 4 3 2
7 7 N 1.31512 * 119.99784 * 180.02562 * 6 4 3
8 8 Si 1.86798 * 120.00239 * 359.97438 * 6 4 3
9 9 H 1.48500 * 109.46757 * 90.00295 * 8 6 4
10 10 H 1.48499 * 109.47031 * 209.99975 * 8 6 4
11 11 H 1.48494 * 109.47211 * 330.00330 * 8 6 4
12 12 C 1.34776 * 119.99666 * 179.97438 * 2 1 3
13 13 O 1.21582 * 119.99285 * 180.02562 * 12 2 1
14 14 N 1.34769 * 120.00195 * 0.02562 * 12 2 1
15 15 C 1.39599 * 119.99937 * 184.48773 * 14 12 2
16 16 C 1.38999 * 119.93915 * 325.21119 * 15 14 12
17 17 C 1.37717 * 120.14247 * 180.27935 * 16 15 14
18 18 C 1.39789 * 120.01426 * 359.97438 * 17 16 15
19 19 C 1.47452 * 120.06344 * 180.02562 * 18 17 16
20 20 O 1.21507 * 120.00152 * 179.97438 * 19 18 17
21 21 O 1.34756 * 119.99907 * 359.97438 * 19 18 17
22 22 C 1.39810 * 119.87629 * 0.02562 * 18 17 16
23 23 C 1.38093 * 119.85862 * 359.97438 * 22 18 17
24 24 O 1.35988 * 120.00384 * 179.97438 * 23 22 18
25 25 C 1.42899 * 117.00519 * 0.02562 * 24 23 22
26 26 F 1.39898 * 109.47141 * 300.00251 * 25 24 23
27 27 F 1.39902 * 109.46581 * 59.99893 * 25 24 23
28 28 H 1.09000 * 109.47405 * 270.00527 * 1 2 3
29 29 H 1.09003 * 109.46756 * 30.00712 * 1 2 3
30 30 H 1.09002 * 109.46791 * 150.00059 * 1 2 3
31 31 H 1.09005 * 109.47304 * 29.99136 * 3 2 1
32 32 H 1.08997 * 109.47331 * 149.99646 * 3 2 1
33 33 H 0.96999 * 120.00385 * 180.02562 * 7 6 4
34 34 H 0.97003 * 120.00126 * 4.49520 * 14 12 2
35 35 H 1.08004 * 119.92719 * 0.27578 * 16 15 14
36 36 H 1.08002 * 119.99261 * 180.02562 * 17 16 15
37 37 H 0.96698 * 117.00143 * 180.02562 * 21 19 18
38 38 H 1.07996 * 120.06920 * 180.02562 * 22 18 17
39 39 H 1.09000 * 109.47176 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4488 1.7036 -1.4209
5 1 2.0975 1.0959 -2.2417
6 6 3.1270 2.8773 -1.6729
7 7 3.3458 3.2571 -2.9128
8 14 3.7339 3.9286 -0.2531
9 1 5.1070 3.5068 0.1235
10 1 3.7498 5.3552 -0.6651
11 1 2.8273 3.7596 0.9108
12 6 2.1389 -1.1672 0.0005
13 8 3.3547 -1.1672 0.0010
14 7 1.4650 -2.3344 0.0005
15 6 2.1597 -3.5415 0.0957
16 6 3.4071 -3.6730 -0.5032
17 6 4.0936 -4.8637 -0.4169
18 6 3.5366 -5.9434 0.2745
19 6 4.2709 -7.2187 0.3682
20 8 3.7859 -8.1563 0.9698
21 8 5.4799 -7.3442 -0.2136
22 6 2.2820 -5.8119 0.8772
23 6 1.5981 -4.6155 0.7874
24 8 0.3774 -4.4845 1.3720
25 6 -0.1369 -5.6247 2.0631
26 9 -0.2606 -6.6946 1.1703
27 9 0.7385 -5.9779 3.0957
28 1 -0.3634 0.0001 1.0276
29 1 -0.3633 0.8900 -0.5140
30 1 -0.3633 -0.8900 -0.5138
31 1 1.6084 2.0285 0.5137
32 1 3.1499 1.1385 0.5139
33 1 3.8233 4.0826 -3.0901
34 1 0.4972 -2.3357 -0.0657
35 1 3.8389 -2.8395 -1.0375
36 1 5.0629 -4.9631 -0.8828
37 1 5.9228 -8.1993 -0.1256
38 1 1.8489 -6.6439 1.4125
39 1 -1.1148 -5.3857 2.4811
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000830723022.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:48
Heat of formation + Delta-G solvation = -241.148517 kcal
Electronic energy + Delta-G solvation = -30242.964452 eV
Core-core repulsion = 25400.502359 eV
Total energy + Delta-G solvation = -4842.462094 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.106 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-50.33222 -48.32941 -42.17975 -41.26333 -40.44041 -38.47814 -37.15991 -36.79034
-36.02741 -34.61618 -31.73926 -31.47560 -30.05732 -27.52156 -27.29940 -25.90116
-24.23489 -23.82205 -22.61914 -21.08136 -20.36362 -19.83395 -19.12423 -18.95076
-18.89386 -18.71885 -18.24842 -17.88957 -17.05146 -16.75456 -16.72740 -16.48256
-15.99123 -15.71780 -15.55398 -15.13594 -14.97104 -14.93214 -14.87188 -14.66188
-14.43913 -14.21113 -14.01088 -13.67754 -13.55584 -13.50703 -13.27122 -13.18391
-12.80362 -12.64922 -12.50991 -12.40468 -12.02552 -11.86675 -11.72074 -11.64859
-11.07792 -10.79519 -9.98834 -9.58726 -9.13562 -8.30559 -6.35831 -0.60980
0.07273 1.27661 1.36450 1.40717 1.41542 1.48847 1.57866 1.95403
2.07387 2.34410 2.53917 2.56212 2.89403 3.04806 3.47012 3.53743
3.66699 3.81111 3.89962 3.96961 4.06631 4.27731 4.48212 4.60689
4.71866 4.79120 4.89195 4.93965 4.95622 5.02065 5.24098 5.34860
5.46955 5.50049 5.53355 5.80107 5.87229 6.27578 6.65883 6.88229
6.91770 7.25275 7.48085 8.86251
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.014521 B = 0.003009 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1927.734452 B = 9304.670005 C =10660.025512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.613 5.613
3 C 0.239 3.761
4 C -0.536 4.536
5 H 0.030 0.970
6 C 0.012 3.988
7 N -0.946 5.946
8 Si 0.947 3.053
9 H -0.277 1.277
10 H -0.278 1.278
11 H -0.235 1.235
12 C 0.696 3.304
13 O -0.609 6.609
14 N -0.667 5.667
15 C 0.193 3.807
16 C -0.123 4.123
17 C -0.047 4.047
18 C -0.130 4.130
19 C 0.541 3.459
20 O -0.544 6.544
21 O -0.499 6.499
22 C -0.112 4.112
23 C 0.067 3.933
24 O -0.318 6.318
25 C 0.404 3.596
26 F -0.208 7.208
27 F -0.210 7.210
28 H 0.083 0.917
29 H 0.076 0.924
30 H 0.080 0.920
31 H 0.058 0.942
32 H 0.024 0.976
33 H 0.268 0.732
34 H 0.424 0.576
35 H 0.140 0.860
36 H 0.164 0.836
37 H 0.436 0.564
38 H 0.152 0.848
39 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.490 -20.036 11.022 24.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.346 5.346
3 C 0.117 3.883
4 C -0.575 4.575
5 H 0.048 0.952
6 C -0.186 4.186
7 N -0.586 5.586
8 Si 0.770 3.230
9 H -0.203 1.203
10 H -0.203 1.203
11 H -0.158 1.158
12 C 0.398 3.602
13 O -0.488 6.488
14 N -0.318 5.318
15 C 0.095 3.905
16 C -0.143 4.143
17 C -0.066 4.066
18 C -0.133 4.133
19 C 0.387 3.613
20 O -0.436 6.436
21 O -0.313 6.313
22 C -0.131 4.131
23 C 0.021 3.979
24 O -0.236 6.236
25 C 0.315 3.685
26 F -0.190 7.190
27 F -0.192 7.192
28 H 0.101 0.899
29 H 0.095 0.905
30 H 0.099 0.901
31 H 0.075 0.925
32 H 0.042 0.958
33 H 0.077 0.923
34 H 0.265 0.735
35 H 0.158 0.842
36 H 0.182 0.818
37 H 0.298 0.702
38 H 0.169 0.831
39 H 0.259 0.741
Dipole moment (debyes) X Y Z Total
from point charges -8.049 -19.513 11.057 23.828
hybrid contribution 0.494 -0.171 -0.073 0.528
sum -7.554 -19.684 10.984 23.773
Atomic orbital electron populations
1.21976 0.77507 1.04006 1.03219 1.47117 1.08126 1.04376 1.75031
1.19335 0.92704 0.80869 0.95404 1.21571 1.36749 1.06712 0.92455
0.95200 1.25821 0.95324 0.98944 0.98511 1.70048 1.42696 1.24507
1.21328 0.85732 0.79662 0.77658 0.79979 1.20251 1.20349 1.15788
1.16006 0.85111 0.80947 0.78118 1.90860 1.13278 1.86243 1.58421
1.42420 1.11111 1.02070 1.76162 1.17214 0.93564 0.83897 0.95809
1.21294 0.94207 0.98865 0.99976 1.21467 1.00218 0.89867 0.95061
1.18816 0.95595 0.92946 1.05928 1.20503 0.79520 0.86964 0.74311
1.90883 1.69160 1.41592 1.41975 1.84536 1.30932 1.44977 1.70867
1.21394 0.94792 0.96457 1.00445 1.18135 0.87399 0.94057 0.98328
1.86603 1.31052 1.38954 1.66979 1.24430 0.94055 0.74343 0.75630
1.93092 1.96271 1.59336 1.70285 1.93091 1.73963 1.92176 1.60003
0.89859 0.90522 0.90123 0.92454 0.95836 0.92319 0.73549 0.84197
0.81844 0.70164 0.83104 0.74116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.93 10.24 127.77 1.31 3.23 16
2 N -0.61 -23.51 2.86 -869.29 -2.48 -25.99 16
3 C 0.24 11.07 4.23 85.63 0.36 11.44 16
4 C -0.54 -30.45 9.94 25.60 0.25 -30.19 16
5 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16
6 C 0.01 0.69 5.47 84.65 0.46 1.16 16
7 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16
8 Si 0.95 43.04 27.47 68.60 1.88 44.92 16
9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16
11 H -0.23 -9.42 6.54 99.48 0.65 -8.77 16
12 C 0.70 27.47 8.12 179.06 1.45 28.92 16
13 O -0.61 -29.12 13.31 -3.98 -0.05 -29.17 16
14 N -0.67 -19.85 5.05 -316.83 -1.60 -21.44 16
15 C 0.19 5.68 6.32 38.40 0.24 5.92 16
16 C -0.12 -3.79 8.67 22.33 0.19 -3.60 16
17 C -0.05 -1.20 9.60 22.52 0.22 -0.99 16
18 C -0.13 -3.28 5.87 -20.09 -0.12 -3.40 16
19 C 0.54 12.57 8.26 70.25 0.58 13.15 16
20 O -0.54 -15.27 17.12 19.81 0.34 -14.93 16
21 O -0.50 -7.97 12.67 -56.66 -0.72 -8.68 16
22 C -0.11 -2.82 7.80 22.62 0.18 -2.64 16
23 C 0.07 1.67 6.50 22.55 0.15 1.82 16
24 O -0.32 -5.99 9.97 -93.42 -0.93 -6.92 16
25 C 0.40 5.20 5.98 113.37 0.68 5.88 16
26 F -0.21 -3.53 15.58 44.97 0.70 -2.83 16
27 F -0.21 -3.82 15.58 44.97 0.70 -3.12 16
28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
29 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16
30 H 0.08 1.61 6.30 -2.39 -0.02 1.60 16
31 H 0.06 2.39 7.13 -2.38 -0.02 2.37 16
32 H 0.02 1.17 6.85 -2.39 -0.02 1.15 16
33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16
34 H 0.42 9.63 6.24 -92.71 -0.58 9.05 16
35 H 0.14 5.16 6.17 -2.91 -0.02 5.15 16
36 H 0.16 3.46 7.60 -2.91 -0.02 3.44 16
37 H 0.44 2.61 9.11 -74.06 -0.67 1.94 16
38 H 0.15 3.78 4.66 -2.91 -0.01 3.77 16
39 H 0.24 0.12 8.14 -2.39 -0.02 0.10 16
Total: -1.00 -83.30 346.10 3.95 -79.34
By element:
Atomic # 1 Polarization: 16.63 SS G_CDS: -0.14 Total: 16.48 kcal
Atomic # 6 Polarization: 24.74 SS G_CDS: 5.96 Total: 30.70 kcal
Atomic # 7 Polarization: -102.01 SS G_CDS: -3.78 Total: -105.79 kcal
Atomic # 8 Polarization: -58.35 SS G_CDS: -1.36 Total: -59.71 kcal
Atomic # 9 Polarization: -7.35 SS G_CDS: 1.40 Total: -5.95 kcal
Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal
Total: -83.30 3.95 -79.34 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000830723022.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -161.806 kcal
(2) G-P(sol) polarization free energy of solvation -83.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -241.149 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds