Wall clock time and date at job start Sat Apr 11 2020 07:02:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13600 * 1
3 3 C 1.43191 * 179.97438 * 2 1
4 4 C 1.40355 * 120.48183 * 145.82841 * 3 2 1
5 5 C 1.36888 * 118.48859 * 179.97438 * 4 3 2
6 6 C 1.39363 * 119.38847 * 359.97438 * 5 4 3
7 7 N 1.38588 * 119.53596 * 180.02562 * 6 5 4
8 8 C 1.48281 * 111.00146 * 176.18104 * 7 6 5
9 9 C 1.56008 * 105.06667 * 122.54373 * 8 7 6
10 10 H 1.09003 * 116.85551 * 159.27425 * 9 8 7
11 11 C 1.57070 * 99.68026 * 32.87929 * 9 8 7
12 12 C 1.49711 * 110.99822 * 293.78282 * 7 6 5
13 13 H 1.08999 * 116.16116 * 76.14423 * 12 7 6
14 14 C 1.56019 * 104.08264 * 306.12179 * 12 7 6
15 15 N 1.47861 * 105.11531 * 288.80361 * 14 12 7
16 16 C 1.34776 * 126.93017 * 181.94202 * 15 14 12
17 17 O 1.21281 * 120.00079 * 180.02562 * 16 15 14
18 18 C 1.50703 * 119.99648 * 359.97438 * 16 15 14
19 19 S 1.81000 * 109.46904 * 180.02562 * 18 16 15
20 20 C 1.76196 * 100.00100 * 179.97438 * 19 18 16
21 21 H 1.08001 * 119.99393 * 0.02562 * 20 19 18
22 22 C 1.38801 * 120.00153 * 179.97438 * 20 19 18
23 23 N 1.31628 * 119.99581 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 119.99971 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47185 * 60.00068 * 24 22 20
26 26 H 1.48496 * 109.46973 * 179.97438 * 24 22 20
27 27 H 1.48497 * 109.47157 * 300.00192 * 24 22 20
28 28 N 1.32563 * 120.93160 * 0.02562 * 6 5 4
29 29 C 1.31709 * 121.64550 * 359.97438 * 28 6 5
30 30 H 1.07995 * 120.75510 * 359.97438 * 4 3 2
31 31 H 1.07998 * 120.30534 * 180.02562 * 5 4 3
32 32 H 1.08996 * 110.32171 * 241.44640 * 8 7 6
33 33 H 1.08998 * 110.32214 * 3.64747 * 8 7 6
34 34 H 1.09000 * 112.35779 * 191.55399 * 11 9 8
35 35 H 1.08995 * 112.43539 * 64.15785 * 11 9 8
36 36 H 1.09001 * 110.31569 * 47.71296 * 14 12 7
37 37 H 1.09003 * 110.31164 * 169.89532 * 14 12 7
38 38 H 1.08998 * 109.47134 * 300.00303 * 18 16 15
39 39 H 1.08992 * 109.46737 * 60.00873 * 18 16 15
40 40 H 0.97003 * 119.99711 * 180.02562 * 23 22 20
41 41 H 1.07996 * 119.74694 * 180.02562 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5679 0.0006 0.0000
4 6 3.2794 1.0017 -0.6794
5 6 4.6475 0.9632 -0.6522
6 6 5.2892 -0.0596 0.0437
7 7 6.6741 -0.1012 0.0736
8 6 7.1540 -1.2070 0.9372
9 6 8.0502 -2.0856 0.0104
10 1 8.7720 -2.7397 0.4996
11 6 8.6383 -0.9687 -0.9243
12 6 7.2324 -0.3703 -1.2892
13 1 7.2261 0.4684 -1.9853
14 6 6.5059 -1.6730 -1.7466
15 7 7.0812 -2.7489 -0.9113
16 6 6.7896 -4.0635 -0.9702
17 8 7.3401 -4.8410 -0.2196
18 6 5.7787 -4.5670 -1.9680
19 16 5.6081 -6.3612 -1.8008
20 6 4.4020 -6.6713 -3.0472
21 1 4.0093 -5.8539 -3.6339
22 6 3.9573 -7.9661 -3.2759
23 7 4.4363 -8.9623 -2.5612
24 14 2.6791 -8.2950 -4.5978
25 1 3.2065 -7.8588 -5.9157
26 1 2.3761 -9.7480 -4.6428
27 1 1.4392 -7.5395 -4.2863
28 7 4.5936 -0.9933 0.6773
29 6 3.2765 -0.9937 0.6766
30 1 2.7594 1.7845 -1.2115
31 1 5.2242 1.7190 -1.1646
32 1 7.7401 -0.8122 1.7670
33 1 6.3113 -1.7886 1.3108
34 1 9.1508 -1.3823 -1.7928
35 1 9.2630 -0.2589 -0.3822
36 1 5.4334 -1.5899 -1.5706
37 1 6.7033 -1.8661 -2.8011
38 1 4.8158 -4.0918 -1.7810
39 1 6.1131 -4.3260 -2.9770
40 1 4.1258 -9.8672 -2.7212
41 1 2.7405 -1.7692 1.2034
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001102537641.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:56
Heat of formation + Delta-G solvation = 94.851156 kcal
Electronic energy + Delta-G solvation = -27159.972786 eV
Core-core repulsion = 23361.355884 eV
Total energy + Delta-G solvation = -3798.616903 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 344.105 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.13790 -40.10985 -38.22994 -36.82793 -34.52768 -33.13901 -32.44543 -32.06575
-30.14971 -29.83089 -28.50563 -25.61607 -25.45954 -24.37178 -23.75192 -21.56065
-21.10552 -19.42842 -19.15594 -18.05577 -17.62584 -17.19348 -16.62833 -16.30112
-15.37897 -15.00817 -14.86353 -14.81940 -14.45100 -14.36104 -14.19396 -13.75853
-13.62260 -13.40218 -13.28086 -13.06285 -12.96130 -12.68120 -12.61534 -12.48974
-12.13021 -11.99877 -11.84199 -11.69897 -11.41627 -11.05839 -11.05218 -10.78421
-10.48290 -10.29573 -9.84721 -9.81176 -9.44257 -9.07378 -8.70426 -8.43130
-8.26430 -6.52156 -6.23063 -3.93942 0.18500 0.81842 2.37160 2.55106
2.74956 3.00313 3.06667 3.22198 3.23235 3.27668 3.49927 3.52918
3.55337 3.76756 4.05546 4.15352 4.19252 4.26393 4.34646 4.51889
4.63768 4.70040 4.86206 5.04466 5.12098 5.17048 5.20267 5.27219
5.35128 5.38476 5.44035 5.50215 5.54185 5.57621 5.66439 5.72866
5.85975 5.97527 6.08921 6.10176 6.23301 6.63195 7.17473 7.48230
7.57108 7.59757 8.33247 8.50109 9.22165 10.84307
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.009104 B = 0.003747 C = 0.002872
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3074.901731 B = 7471.241203 C = 9747.099492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.414 5.414
2 C 0.260 3.740
3 C -0.112 4.112
4 C -0.007 4.007
5 C -0.181 4.181
6 C 0.338 3.662
7 N -0.465 5.465
8 C 0.013 3.987
9 C 0.117 3.883
10 H 0.133 0.867
11 C -0.135 4.135
12 C 0.062 3.938
13 H 0.144 0.856
14 C 0.075 3.925
15 N -0.624 5.624
16 C 0.556 3.444
17 O -0.512 6.512
18 C -0.145 4.145
19 S -0.057 6.057
20 C -0.536 4.536
21 H 0.071 0.929
22 C 0.075 3.925
23 N -0.867 5.867
24 Si 0.917 3.083
25 H -0.274 1.274
26 H -0.282 1.282
27 H -0.274 1.274
28 N -0.509 5.509
29 C 0.187 3.813
30 H 0.146 0.854
31 H 0.148 0.852
32 H 0.092 0.908
33 H 0.114 0.886
34 H 0.093 0.907
35 H 0.098 0.902
36 H 0.070 0.930
37 H 0.079 0.921
38 H 0.085 0.915
39 H 0.086 0.914
40 H 0.269 0.731
41 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.999 25.074 3.128 25.970
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.089 5.089
2 C -0.056 4.056
3 C -0.119 4.119
4 C -0.035 4.035
5 C -0.204 4.204
6 C 0.106 3.894
7 N -0.182 5.182
8 C -0.114 4.114
9 C 0.013 3.987
10 H 0.151 0.849
11 C -0.173 4.173
12 C -0.044 4.044
13 H 0.161 0.839
14 C -0.049 4.049
15 N -0.363 5.363
16 C 0.345 3.655
17 O -0.386 6.386
18 C -0.296 4.296
19 S 0.169 5.831
20 C -0.684 4.684
21 H 0.089 0.911
22 C -0.134 4.134
23 N -0.502 5.502
24 Si 0.743 3.257
25 H -0.199 1.199
26 H -0.207 1.207
27 H -0.199 1.199
28 N -0.222 5.222
29 C 0.026 3.974
30 H 0.163 0.837
31 H 0.165 0.835
32 H 0.111 0.889
33 H 0.131 0.869
34 H 0.111 0.889
35 H 0.116 0.884
36 H 0.088 0.912
37 H 0.097 0.903
38 H 0.103 0.897
39 H 0.104 0.896
40 H 0.079 0.921
41 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 5.709 23.433 4.916 24.614
hybrid contribution -1.906 0.744 -2.440 3.184
sum 3.803 24.176 2.476 24.599
Atomic orbital electron populations
1.81291 1.11892 1.07481 1.08250 1.25342 0.92227 0.94084 0.93944
1.16923 0.85686 1.01629 1.07650 1.21215 0.93634 0.95494 0.93131
1.21227 0.94374 1.00601 1.04153 1.20138 0.90678 0.88889 0.89735
1.61974 1.03142 1.43070 1.10032 1.23925 1.01088 0.90906 0.95485
1.23956 0.91186 0.92504 0.91072 0.84922 1.24034 0.95078 0.97561
1.00651 1.24843 0.95078 0.96039 0.88398 0.83893 1.23109 0.97955
0.87368 0.96517 1.49228 1.43268 1.05785 1.37998 1.19965 0.82231
0.79421 0.83907 1.90713 1.51935 1.53715 1.42208 1.23487 0.99460
1.06741 0.99894 1.85383 1.54962 0.92939 1.49776 1.22802 1.27340
0.96091 1.22208 0.91110 1.24970 0.96741 0.95018 0.96681 1.70004
1.41653 0.99963 1.38600 0.86247 0.80893 0.77449 0.81073 1.19931
1.20737 1.19939 1.67793 1.08095 1.23654 1.22643 1.22869 0.88826
0.94314 0.91439 0.83657 0.83453 0.88947 0.86851 0.88879 0.88351
0.91210 0.90302 0.89689 0.89586 0.92099 0.81419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.41 -5.38 18.54 41.84 0.78 -4.60 16
2 C 0.26 2.70 15.37 -22.48 -0.35 2.36 16
3 C -0.11 -0.94 5.75 -106.67 -0.61 -1.56 16
4 C -0.01 -0.04 9.85 -39.27 -0.39 -0.43 16
5 C -0.18 -1.14 9.49 -39.65 -0.38 -1.51 16
6 C 0.34 2.96 4.19 -155.20 -0.65 2.31 16
7 N -0.46 -3.77 5.28 -156.30 -0.83 -4.59 16
8 C 0.01 0.13 6.16 -1.45 -0.01 0.12 16
9 C 0.12 1.21 5.23 -62.57 -0.33 0.88 16
10 H 0.13 1.45 8.06 -51.93 -0.42 1.03 16
11 C -0.13 -0.91 6.80 -22.31 -0.15 -1.07 16
12 C 0.06 0.41 4.88 -62.31 -0.30 0.10 16
13 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16
14 C 0.08 0.75 5.71 -1.68 -0.01 0.74 16
15 N -0.62 -8.36 2.95 -156.80 -0.46 -8.82 16
16 C 0.56 10.44 7.91 -10.98 -0.09 10.35 16
17 O -0.51 -11.55 16.21 5.56 0.09 -11.46 16
18 C -0.15 -2.98 5.44 36.01 0.20 -2.78 16
19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16
20 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16
21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16
22 C 0.08 2.15 5.49 -17.43 -0.10 2.05 16
23 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16
24 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16
25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
28 N -0.51 -5.42 7.60 -12.11 -0.09 -5.51 16
29 C 0.19 1.78 10.92 -17.10 -0.19 1.59 16
30 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16
31 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16
32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.11 1.42 5.94 -51.93 -0.31 1.11 16
34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.07 0.77 6.09 -51.93 -0.32 0.46 16
37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16
39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16
40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
41 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16
LS Contribution 365.31 15.07 5.51 5.51
Total: -1.00 -36.34 365.31 -9.38 -45.72
By element:
Atomic # 1 Polarization: 3.12 SS G_CDS: -4.82 Total: -1.70 kcal
Atomic # 6 Polarization: 1.23 SS G_CDS: -3.05 Total: -1.83 kcal
Atomic # 7 Polarization: -49.06 SS G_CDS: 0.13 Total: -48.93 kcal
Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -36.34 -9.38 -45.72 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001102537641.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.573 kcal
(2) G-P(sol) polarization free energy of solvation -36.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds