Wall clock time and date at job start Sat Apr 11 2020 07:02:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13600 * 1
3 3 C 1.43191 * 179.97438 * 2 1
4 4 C 1.40355 * 120.48183 * 145.82841 * 3 2 1
5 5 C 1.36888 * 118.48859 * 179.97438 * 4 3 2
6 6 C 1.39363 * 119.38847 * 359.97438 * 5 4 3
7 7 N 1.38588 * 119.53596 * 180.02562 * 6 5 4
8 8 C 1.48281 * 111.00146 * 176.18104 * 7 6 5
9 9 C 1.56008 * 105.06667 * 122.54373 * 8 7 6
10 10 H 1.09003 * 116.85551 * 159.27425 * 9 8 7
11 11 C 1.57070 * 99.68026 * 32.87929 * 9 8 7
12 12 C 1.49711 * 110.99822 * 293.78282 * 7 6 5
13 13 H 1.08999 * 116.16116 * 76.14423 * 12 7 6
14 14 C 1.56019 * 104.08264 * 306.12179 * 12 7 6
15 15 N 1.47861 * 105.11531 * 288.80361 * 14 12 7
16 16 C 1.34776 * 126.93017 * 181.94202 * 15 14 12
17 17 O 1.21281 * 120.00079 * 180.02562 * 16 15 14
18 18 C 1.50703 * 119.99648 * 359.97438 * 16 15 14
19 19 S 1.81000 * 109.46904 * 180.02562 * 18 16 15
20 20 C 1.76196 * 100.00100 * 179.97438 * 19 18 16
21 21 H 1.08001 * 119.99393 * 0.02562 * 20 19 18
22 22 C 1.38801 * 120.00153 * 179.97438 * 20 19 18
23 23 N 1.31628 * 119.99581 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 119.99971 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47185 * 60.00068 * 24 22 20
26 26 H 1.48496 * 109.46973 * 179.97438 * 24 22 20
27 27 H 1.48497 * 109.47157 * 300.00192 * 24 22 20
28 28 N 1.32563 * 120.93160 * 0.02562 * 6 5 4
29 29 C 1.31709 * 121.64550 * 359.97438 * 28 6 5
30 30 H 1.07995 * 120.75510 * 359.97438 * 4 3 2
31 31 H 1.07998 * 120.30534 * 180.02562 * 5 4 3
32 32 H 1.08996 * 110.32171 * 241.44640 * 8 7 6
33 33 H 1.08998 * 110.32214 * 3.64747 * 8 7 6
34 34 H 1.09000 * 112.35779 * 191.55399 * 11 9 8
35 35 H 1.08995 * 112.43539 * 64.15785 * 11 9 8
36 36 H 1.09001 * 110.31569 * 47.71296 * 14 12 7
37 37 H 1.09003 * 110.31164 * 169.89532 * 14 12 7
38 38 H 1.08998 * 109.47134 * 300.00303 * 18 16 15
39 39 H 1.08992 * 109.46737 * 60.00873 * 18 16 15
40 40 H 0.97003 * 119.99711 * 180.02562 * 23 22 20
41 41 H 1.07996 * 119.74694 * 180.02562 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5679 0.0006 0.0000
4 6 3.2794 1.0017 -0.6794
5 6 4.6475 0.9632 -0.6522
6 6 5.2892 -0.0596 0.0437
7 7 6.6741 -0.1012 0.0736
8 6 7.1540 -1.2070 0.9372
9 6 8.0502 -2.0856 0.0104
10 1 8.7720 -2.7397 0.4996
11 6 8.6383 -0.9687 -0.9243
12 6 7.2324 -0.3703 -1.2892
13 1 7.2261 0.4684 -1.9853
14 6 6.5059 -1.6730 -1.7466
15 7 7.0812 -2.7489 -0.9113
16 6 6.7896 -4.0635 -0.9702
17 8 7.3401 -4.8410 -0.2196
18 6 5.7787 -4.5670 -1.9680
19 16 5.6081 -6.3612 -1.8008
20 6 4.4020 -6.6713 -3.0472
21 1 4.0093 -5.8539 -3.6339
22 6 3.9573 -7.9661 -3.2759
23 7 4.4363 -8.9623 -2.5612
24 14 2.6791 -8.2950 -4.5978
25 1 3.2065 -7.8588 -5.9157
26 1 2.3761 -9.7480 -4.6428
27 1 1.4392 -7.5395 -4.2863
28 7 4.5936 -0.9933 0.6773
29 6 3.2765 -0.9937 0.6766
30 1 2.7594 1.7845 -1.2115
31 1 5.2242 1.7190 -1.1646
32 1 7.7401 -0.8122 1.7670
33 1 6.3113 -1.7886 1.3108
34 1 9.1508 -1.3823 -1.7928
35 1 9.2630 -0.2589 -0.3822
36 1 5.4334 -1.5899 -1.5706
37 1 6.7033 -1.8661 -2.8011
38 1 4.8158 -4.0918 -1.7810
39 1 6.1131 -4.3260 -2.9770
40 1 4.1258 -9.8672 -2.7212
41 1 2.7405 -1.7692 1.2034
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001102537641.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:55
Heat of formation + Delta-G solvation = 70.010607 kcal
Electronic energy + Delta-G solvation = -27161.049953 eV
Core-core repulsion = 23361.355884 eV
Total energy + Delta-G solvation = -3799.694070 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 344.105 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.87270 -40.91740 -39.53905 -37.71869 -35.44813 -34.62127 -33.77385 -33.02309
-30.91579 -30.87187 -29.64573 -27.69741 -26.37817 -25.04982 -24.48783 -22.48978
-21.80197 -20.36307 -20.06021 -19.65296 -18.51126 -18.34203 -17.61046 -17.21822
-16.91699 -16.59333 -16.02617 -15.95520 -15.63902 -15.23501 -15.04701 -14.91774
-14.58772 -14.37995 -14.21360 -14.13753 -14.06020 -13.71074 -13.60236 -13.39730
-13.22298 -13.14714 -12.92296 -12.90584 -12.69742 -12.48169 -12.33265 -12.20108
-11.77397 -11.23075 -11.16508 -10.99578 -10.83070 -10.45305 -10.33416 -9.70429
-9.19699 -8.71377 -8.37860 -6.16640 -0.47056 0.26129 1.19401 1.40326
1.40783 1.50962 1.54639 1.54809 1.81772 1.98739 2.23847 2.39976
2.79516 2.84284 2.96182 3.08222 3.24180 3.38984 3.48472 3.58000
3.75405 3.79109 3.93263 4.03195 4.12028 4.14667 4.31438 4.34098
4.45591 4.52431 4.68487 4.70941 4.77099 4.88170 4.91388 4.99433
5.02389 5.09695 5.24383 5.36972 5.37136 5.41067 5.97745 6.15640
6.35732 6.37370 6.83952 7.03064 7.09012 8.71216
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.009104 B = 0.003747 C = 0.002872
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3074.901731 B = 7471.241203 C = 9747.099492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.465 5.465
2 C 0.285 3.715
3 C -0.116 4.116
4 C 0.004 3.996
5 C -0.164 4.164
6 C 0.322 3.678
7 N -0.454 5.454
8 C 0.018 3.982
9 C 0.099 3.901
10 H 0.118 0.882
11 C -0.117 4.117
12 C 0.080 3.920
13 H 0.192 0.808
14 C 0.062 3.938
15 N -0.615 5.615
16 C 0.553 3.447
17 O -0.564 6.564
18 C -0.116 4.116
19 S -0.144 6.144
20 C -0.548 4.548
21 H 0.079 0.921
22 C 0.017 3.983
23 N -0.910 5.910
24 Si 0.996 3.004
25 H -0.260 1.260
26 H -0.276 1.276
27 H -0.265 1.265
28 N -0.541 5.541
29 C 0.172 3.828
30 H 0.178 0.822
31 H 0.187 0.813
32 H 0.108 0.892
33 H 0.081 0.919
34 H 0.099 0.901
35 H 0.126 0.874
36 H 0.060 0.940
37 H 0.092 0.908
38 H 0.091 0.909
39 H 0.103 0.897
40 H 0.272 0.728
41 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.554 29.148 0.789 29.886
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.141 5.141
2 C -0.030 4.030
3 C -0.123 4.123
4 C -0.023 4.023
5 C -0.186 4.186
6 C 0.091 3.909
7 N -0.172 5.172
8 C -0.110 4.110
9 C -0.004 4.004
10 H 0.136 0.864
11 C -0.155 4.155
12 C -0.024 4.024
13 H 0.209 0.791
14 C -0.062 4.062
15 N -0.350 5.350
16 C 0.341 3.659
17 O -0.443 6.443
18 C -0.268 4.268
19 S 0.083 5.917
20 C -0.696 4.696
21 H 0.097 0.903
22 C -0.188 4.188
23 N -0.546 5.546
24 Si 0.817 3.183
25 H -0.184 1.184
26 H -0.201 1.201
27 H -0.190 1.190
28 N -0.255 5.255
29 C 0.011 3.989
30 H 0.195 0.805
31 H 0.204 0.796
32 H 0.126 0.874
33 H 0.099 0.901
34 H 0.117 0.883
35 H 0.144 0.856
36 H 0.079 0.921
37 H 0.111 0.889
38 H 0.109 0.891
39 H 0.121 0.879
40 H 0.081 0.919
41 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges 6.271 27.586 2.571 28.407
hybrid contribution -1.988 -0.396 -1.635 2.604
sum 4.283 27.191 0.936 27.542
Atomic orbital electron populations
1.81309 1.13359 1.09264 1.10154 1.25589 0.92430 0.92560 0.92431
1.16955 0.84492 1.02415 1.08469 1.21580 0.93781 0.94994 0.91937
1.21573 0.94347 0.99976 1.02686 1.20482 0.90906 0.89398 0.90160
1.62124 1.02928 1.41627 1.10472 1.23761 0.99924 0.91092 0.96178
1.24263 0.90997 0.93148 0.91959 0.86364 1.24027 0.95474 0.96028
0.99940 1.25183 0.93647 0.95509 0.88092 0.79080 1.23480 0.97880
0.88043 0.96772 1.49131 1.42961 1.04605 1.38323 1.19602 0.81836
0.81215 0.83238 1.90684 1.53827 1.55721 1.44060 1.23246 1.00712
1.01217 1.01588 1.85541 1.55519 0.99919 1.50708 1.23123 1.27450
0.96804 1.22218 0.90292 1.26089 0.98973 0.94584 0.99155 1.70169
1.43338 1.00506 1.40569 0.85045 0.77747 0.77528 0.77951 1.18411
1.20140 1.18980 1.67750 1.08515 1.25252 1.23942 1.22818 0.88881
0.94939 0.92306 0.80492 0.79616 0.87384 0.90070 0.88294 0.85616
0.92149 0.88931 0.89086 0.87922 0.91898 0.82172
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -12.14 18.54 19.00 0.35 -11.79 16
2 C 0.28 5.79 15.37 88.33 1.36 7.14 16
3 C -0.12 -1.80 5.75 -21.19 -0.12 -1.92 16
4 C 0.00 0.04 9.85 22.47 0.22 0.26 16
5 C -0.16 -1.29 9.49 22.22 0.21 -1.08 16
6 C 0.32 4.73 4.19 133.21 0.56 5.29 16
7 N -0.45 -5.72 5.28 -648.41 -3.43 -9.15 16
8 C 0.02 0.33 6.16 87.08 0.54 0.87 16
9 C 0.10 1.94 5.23 46.92 0.25 2.19 16
10 H 0.12 2.65 8.06 -2.39 -0.02 2.63 16
11 C -0.12 -1.10 6.80 33.46 0.23 -0.87 16
12 C 0.08 0.66 4.88 46.85 0.23 0.89 16
13 H 0.19 -0.09 8.14 -2.39 -0.02 -0.11 16
14 C 0.06 1.06 5.71 87.16 0.50 1.56 16
15 N -0.61 -16.07 2.95 -768.39 -2.26 -18.33 16
16 C 0.55 21.40 7.91 87.66 0.69 22.09 16
17 O -0.56 -26.98 16.21 -3.03 -0.05 -27.03 16
18 C -0.12 -4.87 5.44 71.24 0.39 -4.48 16
19 S -0.14 -8.18 20.57 -56.49 -1.16 -9.35 16
20 C -0.55 -31.85 9.50 67.95 0.65 -31.20 16
21 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16
22 C 0.02 0.98 5.49 84.86 0.47 1.45 16
23 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16
24 Si 1.00 44.10 29.55 68.60 2.03 46.13 16
25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16
26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16
27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16
28 N -0.54 -11.28 7.60 -192.23 -1.46 -12.74 16
29 C 0.17 3.29 10.92 85.04 0.93 4.22 16
30 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16
31 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16
32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16
33 H 0.08 2.07 5.94 -2.39 -0.01 2.06 16
34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16
35 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16
36 H 0.06 1.20 6.09 -2.39 -0.01 1.19 16
37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.09 3.65 8.14 -2.40 -0.02 3.63 16
39 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16
40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
41 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16
Total: -1.00 -85.85 365.31 2.46 -83.39
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: 1.07 Total: 8.56 kcal
Atomic # 6 Polarization: -0.67 SS G_CDS: 7.08 Total: 6.41 kcal
Atomic # 7 Polarization: -101.60 SS G_CDS: -6.51 Total: -108.12 kcal
Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.35 kcal
Total: -85.85 2.46 -83.39 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001102537641.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.401 kcal
(2) G-P(sol) polarization free energy of solvation -85.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.011 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds