Wall clock time and date at job start Sat Apr 11 2020 07:04:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34669 * 117.00026 * 2 1
4 4 O 1.21411 * 119.99890 * 359.97438 * 3 2 1
5 5 C 1.48206 * 120.00083 * 180.02562 * 3 2 1
6 6 N 1.32498 * 119.80267 * 355.39120 * 5 3 2
7 7 C 1.31615 * 121.79996 * 179.72580 * 6 5 3
8 8 C 1.38616 * 121.18697 * 0.02562 * 7 6 5
9 9 C 1.38455 * 119.46468 * 359.97438 * 8 7 6
10 10 C 1.39861 * 118.35075 * 0.02562 * 9 8 7
11 11 C 1.47951 * 120.59833 * 180.02562 * 10 9 8
12 12 O 1.21543 * 119.99804 * 124.65753 * 11 10 9
13 13 N 1.34782 * 119.99772 * 304.66114 * 11 10 9
14 14 C 1.39908 * 119.99729 * 184.89962 * 13 11 10
15 15 C 1.39399 * 119.90785 * 323.75481 * 14 13 11
16 16 C 1.38366 * 120.46107 * 179.72456 * 15 14 13
17 17 C 1.38013 * 120.28701 * 0.55145 * 16 15 14
18 18 F 1.35103 * 120.08783 * 179.70281 * 17 16 15
19 19 C 1.41007 * 119.82045 * 359.72884 * 17 16 15
20 20 C 1.41299 * 120.22645 * 179.97438 * 19 17 16
21 21 H 1.08001 * 119.99766 * 213.73751 * 20 19 17
22 22 C 1.39922 * 120.00548 * 33.73657 * 20 19 17
23 23 N 1.30845 * 120.00363 * 215.36193 * 22 20 19
24 24 Si 1.86805 * 119.99494 * 35.35652 * 22 20 19
25 25 H 1.48499 * 109.46797 * 93.81208 * 24 22 20
26 26 H 1.48498 * 109.46786 * 213.80783 * 24 22 20
27 27 H 1.48496 * 109.47276 * 333.80895 * 24 22 20
28 28 C 1.38166 * 119.91292 * 144.03284 * 14 13 11
29 29 H 1.08994 * 109.47220 * 300.00619 * 1 2 3
30 30 H 1.08999 * 109.46811 * 60.00209 * 1 2 3
31 31 H 1.08997 * 109.47030 * 180.02562 * 1 2 3
32 32 H 1.07999 * 119.40926 * 179.97438 * 7 6 5
33 33 H 1.08004 * 120.26746 * 180.02562 * 8 7 6
34 34 H 1.08003 * 120.82780 * 179.97438 * 9 8 7
35 35 H 0.97001 * 119.99912 * 4.89413 * 13 11 10
36 36 H 1.07999 * 119.77233 * 359.97438 * 15 14 13
37 37 H 1.07999 * 119.85403 * 180.26204 * 16 15 14
38 38 H 0.96999 * 120.00338 * 180.02562 * 23 22 20
39 39 H 1.07997 * 120.14888 * 359.97438 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0634 1.1999 0.0000
4 8 1.4021 2.2181 -0.0005
5 6 3.5434 1.2775 -0.0006
6 7 4.2611 0.1675 0.0913
7 6 5.5770 0.1902 0.0891
8 6 6.2741 1.3843 -0.0095
9 6 5.5747 2.5751 -0.1081
10 6 4.1769 2.5267 -0.1037
11 6 3.3800 3.7689 -0.2071
12 8 2.5481 3.8859 -1.0856
13 7 3.5765 4.7708 0.6728
14 6 2.7543 5.9023 0.6395
15 6 2.3013 6.3966 -0.5827
16 6 1.4831 7.5115 -0.6285
17 6 1.1156 8.1536 0.5365
18 9 0.3214 9.2454 0.4866
19 6 1.5717 7.6673 1.7790
20 6 1.2012 8.3183 2.9771
21 1 1.8895 8.3517 3.8087
22 6 -0.0574 8.9198 3.0862
23 7 -0.1970 10.0254 3.7720
24 14 -1.5385 8.1444 2.2528
25 1 -2.2421 7.2603 3.2164
26 1 -2.4634 9.2117 1.7939
27 1 -1.0874 7.3448 1.0856
28 6 2.3983 6.5302 1.8176
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 6.1236 -0.7380 0.1664
33 1 7.3541 1.3857 -0.0103
34 1 6.0954 3.5181 -0.1855
35 1 4.2879 4.7073 1.3291
36 1 2.5876 5.9036 -1.4999
37 1 1.1343 7.8836 -1.5805
38 1 -1.0696 10.4422 3.8479
39 1 2.7529 6.1493 2.7639
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192504669.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:00
Heat of formation + Delta-G solvation = -107.303375 kcal
Electronic energy + Delta-G solvation = -29267.457409 eV
Core-core repulsion = 24861.568501 eV
Total energy + Delta-G solvation = -4405.888908 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.100 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-49.47761 -42.34830 -41.09825 -40.49679 -38.89234 -37.59668 -36.05219 -35.24293
-33.92804 -32.97983 -32.36898 -30.07046 -28.93800 -27.21555 -26.16644 -25.50831
-23.45156 -23.19650 -22.45765 -21.57972 -19.96653 -19.53771 -18.98205 -18.29784
-18.11001 -17.87860 -17.55670 -17.32709 -16.96009 -16.61095 -16.41913 -16.08798
-15.85846 -15.43654 -15.12234 -14.88107 -14.80550 -14.70234 -14.32587 -14.17263
-14.10527 -13.69692 -13.60730 -13.54259 -13.23818 -13.08629 -12.96616 -12.57273
-12.04776 -11.97349 -11.89215 -11.60663 -11.32456 -11.13837 -11.02546 -10.84514
-10.67555 -10.42104 -9.69937 -9.08170 -8.84538 -6.51688 -0.83511 -0.11028
0.52054 0.65356 1.22428 1.26248 1.29153 1.38845 1.40940 1.55636
1.99303 2.11509 2.43720 2.61565 3.00191 3.24812 3.42707 3.59445
3.73437 3.85504 3.91077 4.13367 4.22155 4.23973 4.28591 4.37406
4.53051 4.61661 4.71906 4.80993 4.82827 4.84511 4.93878 5.13506
5.21824 5.41554 5.49228 5.55102 5.67867 5.76438 6.05332 6.22969
6.36420 6.46679 6.59104 6.69317 6.71634 7.12905 7.98033
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.015178 B = 0.003247 C = 0.002953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1844.364482 B = 8622.269353 C = 9480.793995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.341 6.341
3 C 0.497 3.503
4 O -0.499 6.499
5 C 0.111 3.889
6 N -0.456 5.456
7 C 0.112 3.888
8 C -0.109 4.109
9 C -0.050 4.050
10 C -0.128 4.128
11 C 0.558 3.442
12 O -0.526 6.526
13 N -0.649 5.649
14 C 0.172 3.828
15 C -0.206 4.206
16 C -0.103 4.103
17 C -0.057 4.057
18 F -0.161 7.161
19 C 0.067 3.933
20 C -0.500 4.500
21 H 0.079 0.921
22 C 0.080 3.920
23 N -0.805 5.805
24 Si 0.941 3.059
25 H -0.271 1.271
26 H -0.264 1.264
27 H -0.265 1.265
28 C -0.214 4.214
29 H 0.058 0.942
30 H 0.057 0.943
31 H 0.142 0.858
32 H 0.214 0.786
33 H 0.205 0.795
34 H 0.181 0.819
35 H 0.423 0.577
36 H 0.125 0.875
37 H 0.128 0.872
38 H 0.296 0.704
39 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.134 -21.197 -5.706 26.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.257 6.257
3 C 0.339 3.661
4 O -0.386 6.386
5 C -0.026 4.026
6 N -0.167 5.167
7 C -0.047 4.047
8 C -0.128 4.128
9 C -0.076 4.076
10 C -0.135 4.135
11 C 0.345 3.655
12 O -0.400 6.400
13 N -0.295 5.295
14 C 0.078 3.922
15 C -0.227 4.227
16 C -0.122 4.122
17 C -0.077 4.077
18 F -0.141 7.141
19 C 0.063 3.937
20 C -0.527 4.527
21 H 0.097 0.903
22 C -0.141 4.141
23 N -0.428 5.428
24 Si 0.765 3.235
25 H -0.197 1.197
26 H -0.189 1.189
27 H -0.189 1.189
28 C -0.235 4.235
29 H 0.077 0.923
30 H 0.076 0.924
31 H 0.160 0.840
32 H 0.230 0.770
33 H 0.222 0.778
34 H 0.199 0.801
35 H 0.261 0.739
36 H 0.143 0.857
37 H 0.146 0.854
38 H 0.107 0.893
39 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 12.674 -21.378 -6.120 25.595
hybrid contribution -0.885 1.327 0.167 1.604
sum 11.790 -20.051 -5.953 24.010
Atomic orbital electron populations
1.23606 0.74514 1.06024 1.02298 1.86603 1.24793 1.30845 1.83447
1.21393 0.89081 0.82082 0.73518 1.91063 1.66492 1.36556 1.44461
1.19784 0.90266 0.89562 1.02987 1.67703 1.10591 1.28110 1.10309
1.23942 0.87822 1.01279 0.91646 1.23019 1.04627 0.90880 0.94292
1.22222 0.89346 1.02795 0.93220 1.20691 0.96593 0.91925 1.04259
1.18408 0.82329 0.82935 0.81870 1.90804 1.33782 1.80483 1.34957
1.43154 1.34260 1.16254 1.35832 1.17457 0.94134 0.87152 0.93413
1.20475 1.06408 0.98912 0.96897 1.20747 0.98926 0.96260 0.96306
1.18092 1.04827 0.89654 0.95155 1.91056 1.72541 1.53532 1.96930
1.17552 0.93237 0.91552 0.91312 1.19179 1.01732 1.31448 1.00319
0.90327 1.26557 1.02618 0.91907 0.93044 1.69839 1.27725 1.12279
1.33002 0.85820 0.77979 0.79838 0.79902 1.19687 1.18891 1.18944
1.20785 1.08201 0.98276 0.96264 0.92301 0.92449 0.83977 0.76965
0.77818 0.80118 0.73872 0.85671 0.85370 0.89272 0.85390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.63 10.56 113.37 1.20 1.83 16
2 O -0.34 -9.66 10.39 -55.78 -0.58 -10.24 16
3 C 0.50 16.50 7.87 70.47 0.55 17.05 16
4 O -0.50 -20.59 12.70 27.79 0.35 -20.23 16
5 C 0.11 2.98 6.78 42.23 0.29 3.27 16
6 N -0.46 -9.41 10.11 -184.03 -1.86 -11.27 16
7 C 0.11 1.08 11.17 84.82 0.95 2.03 16
8 C -0.11 -0.61 10.10 22.41 0.23 -0.39 16
9 C -0.05 -0.62 9.89 22.71 0.22 -0.40 16
10 C -0.13 -3.13 5.69 -19.77 -0.11 -3.24 16
11 C 0.56 18.78 5.77 86.82 0.50 19.29 16
12 O -0.53 -22.63 12.18 19.20 0.23 -22.40 16
13 N -0.65 -20.85 5.32 -306.11 -1.63 -22.48 16
14 C 0.17 7.23 6.27 38.11 0.24 7.46 16
15 C -0.21 -9.19 8.69 22.58 0.20 -8.99 16
16 C -0.10 -4.84 10.00 22.25 0.22 -4.61 16
17 C -0.06 -2.99 5.30 22.90 0.12 -2.87 16
18 F -0.16 -8.71 13.16 44.97 0.59 -8.12 16
19 C 0.07 3.55 4.88 -21.26 -0.10 3.45 16
20 C -0.50 -28.13 9.33 23.43 0.22 -27.91 16
21 H 0.08 4.53 8.06 -2.91 -0.02 4.51 16
22 C 0.08 4.43 4.52 85.25 0.39 4.81 16
23 N -0.81 -44.42 13.93 21.82 0.30 -44.11 16
24 Si 0.94 46.27 25.58 68.60 1.75 48.02 16
25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
26 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16
27 H -0.26 -13.94 5.90 99.48 0.59 -13.36 16
28 C -0.21 -9.77 9.70 22.84 0.22 -9.55 16
29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
31 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16
32 H 0.21 0.16 8.06 -2.91 -0.02 0.14 16
33 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16
34 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16
35 H 0.42 9.80 8.77 -92.71 -0.81 8.99 16
36 H 0.13 5.43 6.28 -2.91 -0.02 5.41 16
37 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16
38 H 0.30 14.74 8.30 -92.71 -0.77 13.97 16
39 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16
Total: -1.00 -82.66 346.10 4.70 -77.96
By element:
Atomic # 1 Polarization: 11.45 SS G_CDS: 0.20 Total: 11.65 kcal
Atomic # 6 Polarization: -4.12 SS G_CDS: 5.33 Total: 1.21 kcal
Atomic # 7 Polarization: -74.67 SS G_CDS: -3.18 Total: -77.85 kcal
Atomic # 8 Polarization: -52.87 SS G_CDS: 0.01 Total: -52.87 kcal
Atomic # 9 Polarization: -8.71 SS G_CDS: 0.59 Total: -8.12 kcal
Atomic # 14 Polarization: 46.27 SS G_CDS: 1.75 Total: 48.02 kcal
Total: -82.66 4.70 -77.96 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192504669.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.342 kcal
(2) G-P(sol) polarization free energy of solvation -82.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds