Wall clock time and date at job start Sat Apr 11 2020 07:02:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31631 * 1
3 3 Si 1.86804 * 119.99922 * 2 1
4 4 H 1.48499 * 109.47141 * 240.00570 * 3 2 1
5 5 H 1.48498 * 109.47060 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46800 * 120.00490 * 3 2 1
7 7 C 1.38793 * 120.00125 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00539 * 179.97438 * 7 2 1
9 9 S 1.76205 * 119.99966 * 359.97438 * 7 2 1
10 10 C 1.81004 * 99.99949 * 180.02562 * 9 7 2
11 11 C 1.50702 * 109.47002 * 180.02562 * 10 9 7
12 12 O 1.21277 * 119.99984 * 359.97438 * 11 10 9
13 13 N 1.34772 * 119.99947 * 180.02562 * 11 10 9
14 14 C 1.46505 * 120.00052 * 179.97438 * 13 11 10
15 15 C 1.53134 * 109.42365 * 275.26079 * 14 13 11
16 16 C 1.53711 * 108.88478 * 185.90893 * 15 14 13
17 17 H 1.08998 * 112.61662 * 188.04428 * 16 15 14
18 18 C 1.54611 * 107.80877 * 312.37311 * 16 15 14
19 19 C 1.54289 * 104.93324 * 88.50859 * 18 16 15
20 20 C 1.54849 * 104.72272 * 0.08277 * 19 18 16
21 21 H 1.08997 * 112.73539 * 147.10455 * 20 19 18
22 22 C 1.53139 * 109.42585 * 154.99723 * 14 13 11
23 23 N 1.48711 * 107.24315 * 64.08771 * 16 15 14
24 24 C 1.46900 * 111.00233 * 168.34538 * 23 16 15
25 25 C 1.50693 * 109.47409 * 189.99599 * 24 23 16
26 26 C 1.31161 * 120.00202 * 124.99887 * 25 24 23
27 27 Cl 1.73596 * 120.00569 * 180.02562 * 26 25 24
28 28 H 0.96998 * 120.00124 * 359.97438 * 1 2 3
29 29 H 1.08993 * 109.47543 * 59.99757 * 10 9 7
30 30 H 1.09007 * 109.47002 * 299.99727 * 10 9 7
31 31 H 0.97002 * 120.00224 * 359.97438 * 13 11 10
32 32 H 1.09000 * 109.42401 * 35.09947 * 14 13 11
33 33 H 1.08998 * 109.57245 * 66.08379 * 15 14 13
34 34 H 1.09004 * 109.56996 * 305.72478 * 15 14 13
35 35 H 1.09002 * 110.36735 * 207.40404 * 18 16 15
36 36 H 1.09005 * 110.36563 * 329.61325 * 18 16 15
37 37 H 1.09003 * 110.36637 * 118.90061 * 19 18 16
38 38 H 1.09003 * 110.36089 * 241.21223 * 19 18 16
39 39 H 1.08994 * 109.56993 * 54.27344 * 22 14 13
40 40 H 1.08998 * 109.56894 * 293.91324 * 22 14 13
41 41 H 1.08994 * 109.47043 * 310.00529 * 24 23 16
42 42 H 1.09010 * 109.46753 * 69.99732 * 24 23 16
43 43 H 1.08006 * 120.00314 * 305.00482 * 25 24 23
44 44 H 1.08006 * 119.99484 * 0.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1039 1.6965 -1.2126
5 1 1.2853 2.7465 0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0010
9 16 1.1293 -2.7280 -0.0005
10 6 2.5159 -3.8914 -0.0005
11 6 1.9874 -5.3027 -0.0012
12 8 0.7912 -5.5023 -0.0011
13 7 2.8442 -6.3431 -0.0008
14 6 2.3304 -7.7151 -0.0008
15 6 2.0273 -8.1454 1.4372
16 6 1.6316 -9.6307 1.4391
17 1 1.2680 -9.9664 2.4103
18 6 0.5874 -9.8433 0.3188
19 6 1.4172 -10.1536 -0.9444
20 6 2.8904 -10.1021 -0.4700
21 1 3.5301 -10.8037 -1.0053
22 6 3.3778 -8.6511 -0.6108
23 7 2.8179 -10.4036 0.9845
24 6 2.6291 -11.8421 1.2151
25 6 3.9299 -12.5642 0.9754
26 6 4.4363 -13.3312 1.9112
27 17 5.9350 -14.1627 1.6354
28 1 -0.4850 0.8400 0.0004
29 1 3.1245 -3.7313 0.8893
30 1 3.1245 -3.7313 -0.8906
31 1 3.8010 -6.1835 -0.0004
32 1 1.4159 -7.7597 -0.5922
33 1 1.2053 -7.5480 1.8316
34 1 2.9138 -8.0031 2.0555
35 1 -0.0633 -10.6835 0.5612
36 1 -0.0018 -8.9379 0.1727
37 1 1.1745 -11.1464 -1.3233
38 1 1.2374 -9.3998 -1.7109
39 1 4.3249 -8.5315 -0.0847
40 1 3.5114 -8.4115 -1.6656
41 1 2.3066 -12.0059 2.2432
42 1 1.8706 -12.2232 0.5313
43 1 4.4452 -12.4502 0.0331
44 1 3.9207 -13.4454 2.8534
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266643624.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:46
Heat of formation + Delta-G solvation = -22.734786 kcal
Electronic energy + Delta-G solvation = -25173.061811 eV
Core-core repulsion = 21470.453493 eV
Total energy + Delta-G solvation = -3702.608318 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.107 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.32506 -38.94539 -37.14306 -35.59655 -34.13690 -32.42433 -31.62665 -31.30244
-30.56353 -28.69382 -25.85380 -25.42994 -24.53092 -22.71496 -21.18716 -20.38467
-19.94290 -19.09056 -17.80098 -17.27957 -16.64902 -16.20502 -15.94282 -15.12918
-14.80866 -14.75225 -14.67870 -14.37043 -13.80133 -13.76043 -13.60542 -13.25578
-13.05047 -12.87468 -12.71203 -12.57778 -12.54688 -12.17888 -11.87261 -11.76429
-11.45131 -11.26322 -11.16802 -11.04167 -11.03690 -10.85654 -10.76943 -10.62043
-10.52259 -9.81456 -9.58199 -9.36963 -9.05797 -8.87903 -8.81273 -8.23455
-6.49300 -6.21146 -3.91615 1.45407 1.92137 3.04711 3.11490 3.23828
3.27887 3.31750 3.58201 3.73689 4.21153 4.23739 4.36135 4.46656
4.52332 4.73717 4.79736 4.88132 4.90471 4.97925 5.02275 5.07974
5.11874 5.13949 5.19515 5.31592 5.46302 5.48519 5.63743 5.67762
5.73589 5.74987 5.79675 5.82332 5.89285 5.91818 5.95762 6.06716
6.15636 6.23111 6.48706 6.66526 6.72232 7.59769 7.75929 8.35523
8.64560 9.24113 10.86199
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.026639 B = 0.001829 C = 0.001761
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1050.825131 B =15306.290432 C =15894.531814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.074 3.926
3 Si 0.918 3.082
4 H -0.274 1.274
5 H -0.283 1.283
6 H -0.274 1.274
7 C -0.536 4.536
8 H 0.072 0.928
9 S -0.060 6.060
10 C -0.154 4.154
11 C 0.533 3.467
12 O -0.519 6.519
13 N -0.735 5.735
14 C 0.146 3.854
15 C -0.118 4.118
16 C 0.069 3.931
17 H 0.096 0.904
18 C -0.156 4.156
19 C -0.153 4.153
20 C 0.067 3.933
21 H 0.096 0.904
22 C -0.115 4.115
23 N -0.498 5.498
24 C 0.074 3.926
25 C -0.125 4.125
26 C -0.105 4.105
27 Cl -0.098 7.098
28 H 0.269 0.731
29 H 0.089 0.911
30 H 0.089 0.911
31 H 0.397 0.603
32 H 0.090 0.910
33 H 0.076 0.924
34 H 0.073 0.927
35 H 0.064 0.936
36 H 0.083 0.917
37 H 0.064 0.936
38 H 0.078 0.922
39 H 0.077 0.923
40 H 0.073 0.927
41 H 0.081 0.919
42 H 0.058 0.942
43 H 0.121 0.879
44 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.467 -28.212 1.413 29.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.684 4.684
8 H 0.090 0.910
9 S 0.166 5.834
10 C -0.305 4.305
11 C 0.319 3.681
12 O -0.393 6.393
13 N -0.388 5.388
14 C 0.041 3.959
15 C -0.157 4.157
16 C -0.040 4.040
17 H 0.114 0.886
18 C -0.195 4.195
19 C -0.192 4.192
20 C -0.043 4.043
21 H 0.114 0.886
22 C -0.154 4.154
23 N -0.220 5.220
24 C -0.054 4.054
25 C -0.145 4.145
26 C -0.150 4.150
27 Cl -0.069 7.069
28 H 0.079 0.921
29 H 0.107 0.893
30 H 0.107 0.893
31 H 0.231 0.769
32 H 0.108 0.892
33 H 0.094 0.906
34 H 0.092 0.908
35 H 0.083 0.917
36 H 0.102 0.898
37 H 0.083 0.917
38 H 0.097 0.903
39 H 0.096 0.904
40 H 0.091 0.909
41 H 0.100 0.900
42 H 0.076 0.924
43 H 0.138 0.862
44 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 6.917 -28.341 1.692 29.221
hybrid contribution 1.800 1.017 -0.439 2.113
sum 8.716 -27.324 1.252 28.708
Atomic orbital electron populations
1.70007 1.05940 1.27544 1.46832 1.24986 0.95026 0.99005 0.94542
0.86231 0.79244 0.81263 0.78805 1.19946 1.20816 1.19939 1.22833
0.94882 0.91705 1.59002 0.90994 1.85366 1.04985 0.96290 1.96720
1.23542 1.06530 0.95539 1.04874 1.20294 0.86571 0.86285 0.74913
1.90684 1.15362 1.85604 1.47694 1.46101 1.09850 1.05329 1.77551
1.21035 0.97781 0.80685 0.96391 1.22101 1.02587 0.93664 0.97383
1.23050 0.88452 0.94355 0.98124 0.88621 1.23016 0.98748 1.02733
0.94998 1.23014 0.95496 1.02085 0.98620 1.23076 0.95796 0.96816
0.88575 0.88551 1.21971 0.99170 0.93046 1.01164 1.65535 1.37814
1.05210 1.13479 1.21184 0.93561 0.88704 1.01960 1.23028 0.97144
0.95276 0.99050 1.24350 0.89800 0.99746 1.01068 1.98373 1.33993
1.78054 1.96513 0.92146 0.89267 0.89314 0.76915 0.89197 0.90578
0.90796 0.91749 0.89816 0.91681 0.90304 0.90394 0.90888 0.90027
0.92442 0.86157 0.83758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16
4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16
8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16
9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16
10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16
11 C 0.53 9.71 7.81 -10.99 -0.09 9.63 16
12 O -0.52 -11.42 15.53 5.56 0.09 -11.34 16
13 N -0.74 -9.58 5.08 -53.67 -0.27 -9.85 16
14 C 0.15 1.65 2.09 -67.79 -0.14 1.50 16
15 C -0.12 -1.29 5.19 -26.29 -0.14 -1.43 16
16 C 0.07 0.59 3.68 -65.49 -0.24 0.35 16
17 H 0.10 0.75 7.98 -51.93 -0.41 0.33 16
18 C -0.16 -1.32 5.44 -25.21 -0.14 -1.46 16
19 C -0.15 -1.18 5.27 -25.08 -0.13 -1.31 16
20 C 0.07 0.49 3.53 -65.36 -0.23 0.26 16
21 H 0.10 0.62 7.12 -51.93 -0.37 0.25 16
22 C -0.12 -0.98 5.09 -26.29 -0.13 -1.11 16
23 N -0.50 -3.83 4.95 -214.23 -1.06 -4.89 16
24 C 0.07 0.45 5.10 -4.98 -0.03 0.43 16
25 C -0.13 -0.77 9.11 -36.07 -0.33 -1.10 16
26 C -0.10 -0.64 10.43 28.97 0.30 -0.34 16
27 Cl -0.10 -0.72 29.10 -51.86 -1.51 -2.23 16
28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16
30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16
31 H 0.40 4.13 8.60 -40.82 -0.35 3.78 16
32 H 0.09 1.19 4.94 -51.93 -0.26 0.94 16
33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.08 0.88 7.04 -51.93 -0.37 0.52 16
37 H 0.06 0.43 7.89 -51.93 -0.41 0.02 16
38 H 0.08 0.68 7.04 -51.93 -0.37 0.31 16
39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.08 0.44 7.62 -51.93 -0.40 0.05 16
42 H 0.06 0.33 6.90 -51.92 -0.36 -0.02 16
43 H 0.12 0.75 7.35 -52.48 -0.39 0.36 16
44 H 0.14 0.68 7.84 -52.48 -0.41 0.26 16
LS Contribution 376.64 15.07 5.68 5.68
Total: -1.00 -33.18 376.64 -11.04 -44.22
By element:
Atomic # 1 Polarization: 8.27 SS G_CDS: -6.59 Total: 1.68 kcal
Atomic # 6 Polarization: -9.53 SS G_CDS: -0.87 Total: -10.40 kcal
Atomic # 7 Polarization: -39.54 SS G_CDS: -0.60 Total: -40.14 kcal
Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.34 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal
Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal
Atomic # 17 Polarization: -0.72 SS G_CDS: -1.51 Total: -2.23 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -33.18 -11.04 -44.22 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266643624.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.482 kcal
(2) G-P(sol) polarization free energy of solvation -33.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.695 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds