Wall clock time and date at job start Sat Apr 11 2020 07:02:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31631 * 1
3 3 Si 1.86804 * 119.99922 * 2 1
4 4 H 1.48499 * 109.47141 * 240.00570 * 3 2 1
5 5 H 1.48498 * 109.47060 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46800 * 120.00490 * 3 2 1
7 7 C 1.38793 * 120.00125 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00539 * 179.97438 * 7 2 1
9 9 S 1.76205 * 119.99966 * 359.97438 * 7 2 1
10 10 C 1.81004 * 99.99949 * 180.02562 * 9 7 2
11 11 C 1.50702 * 109.47002 * 180.02562 * 10 9 7
12 12 O 1.21277 * 119.99984 * 359.97438 * 11 10 9
13 13 N 1.34772 * 119.99947 * 180.02562 * 11 10 9
14 14 C 1.46505 * 120.00052 * 179.97438 * 13 11 10
15 15 C 1.53134 * 109.42365 * 275.26079 * 14 13 11
16 16 C 1.53711 * 108.88478 * 185.90893 * 15 14 13
17 17 H 1.08998 * 112.61662 * 188.04428 * 16 15 14
18 18 C 1.54611 * 107.80877 * 312.37311 * 16 15 14
19 19 C 1.54289 * 104.93324 * 88.50859 * 18 16 15
20 20 C 1.54849 * 104.72272 * 0.08277 * 19 18 16
21 21 H 1.08997 * 112.73539 * 147.10455 * 20 19 18
22 22 C 1.53139 * 109.42585 * 154.99723 * 14 13 11
23 23 N 1.48711 * 107.24315 * 64.08771 * 16 15 14
24 24 C 1.46900 * 111.00233 * 168.34538 * 23 16 15
25 25 C 1.50693 * 109.47409 * 189.99599 * 24 23 16
26 26 C 1.31161 * 120.00202 * 124.99887 * 25 24 23
27 27 Cl 1.73596 * 120.00569 * 180.02562 * 26 25 24
28 28 H 0.96998 * 120.00124 * 359.97438 * 1 2 3
29 29 H 1.08993 * 109.47543 * 59.99757 * 10 9 7
30 30 H 1.09007 * 109.47002 * 299.99727 * 10 9 7
31 31 H 0.97002 * 120.00224 * 359.97438 * 13 11 10
32 32 H 1.09000 * 109.42401 * 35.09947 * 14 13 11
33 33 H 1.08998 * 109.57245 * 66.08379 * 15 14 13
34 34 H 1.09004 * 109.56996 * 305.72478 * 15 14 13
35 35 H 1.09002 * 110.36735 * 207.40404 * 18 16 15
36 36 H 1.09005 * 110.36563 * 329.61325 * 18 16 15
37 37 H 1.09003 * 110.36637 * 118.90061 * 19 18 16
38 38 H 1.09003 * 110.36089 * 241.21223 * 19 18 16
39 39 H 1.08994 * 109.56993 * 54.27344 * 22 14 13
40 40 H 1.08998 * 109.56894 * 293.91324 * 22 14 13
41 41 H 1.08994 * 109.47043 * 310.00529 * 24 23 16
42 42 H 1.09010 * 109.46753 * 69.99732 * 24 23 16
43 43 H 1.08006 * 120.00314 * 305.00482 * 25 24 23
44 44 H 1.08006 * 119.99484 * 0.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1039 1.6965 -1.2126
5 1 1.2853 2.7465 0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0010
9 16 1.1293 -2.7280 -0.0005
10 6 2.5159 -3.8914 -0.0005
11 6 1.9874 -5.3027 -0.0012
12 8 0.7912 -5.5023 -0.0011
13 7 2.8442 -6.3431 -0.0008
14 6 2.3304 -7.7151 -0.0008
15 6 2.0273 -8.1454 1.4372
16 6 1.6316 -9.6307 1.4391
17 1 1.2680 -9.9664 2.4103
18 6 0.5874 -9.8433 0.3188
19 6 1.4172 -10.1536 -0.9444
20 6 2.8904 -10.1021 -0.4700
21 1 3.5301 -10.8037 -1.0053
22 6 3.3778 -8.6511 -0.6108
23 7 2.8179 -10.4036 0.9845
24 6 2.6291 -11.8421 1.2151
25 6 3.9299 -12.5642 0.9754
26 6 4.4363 -13.3312 1.9112
27 17 5.9350 -14.1627 1.6354
28 1 -0.4850 0.8400 0.0004
29 1 3.1245 -3.7313 0.8893
30 1 3.1245 -3.7313 -0.8906
31 1 3.8010 -6.1835 -0.0004
32 1 1.4159 -7.7597 -0.5922
33 1 1.2053 -7.5480 1.8316
34 1 2.9138 -8.0031 2.0555
35 1 -0.0633 -10.6835 0.5612
36 1 -0.0018 -8.9379 0.1727
37 1 1.1745 -11.1464 -1.3233
38 1 1.2374 -9.3998 -1.7109
39 1 4.3249 -8.5315 -0.0847
40 1 3.5114 -8.4115 -1.6656
41 1 2.3066 -12.0059 2.2432
42 1 1.8706 -12.2232 0.5313
43 1 4.4452 -12.4502 0.0331
44 1 3.9207 -13.4454 2.8534
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266643624.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:46
Heat of formation + Delta-G solvation = -44.919068 kcal
Electronic energy + Delta-G solvation = -25174.023794 eV
Core-core repulsion = 21470.453493 eV
Total energy + Delta-G solvation = -3703.570301 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.107 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.08973 -40.29555 -37.65869 -36.49169 -34.97188 -34.58129 -32.42827 -32.27217
-31.27298 -30.04696 -27.67160 -26.43160 -25.28309 -23.55277 -21.82986 -21.64695
-20.55459 -20.09210 -19.53603 -18.08434 -17.89750 -17.06147 -16.87458 -16.83149
-16.32554 -16.10305 -15.54974 -15.21569 -15.05627 -14.70509 -14.45331 -14.35778
-14.27236 -13.89919 -13.65821 -13.45999 -13.35510 -13.16708 -13.09740 -12.86835
-12.72223 -12.62648 -12.42719 -12.16505 -11.91081 -11.75696 -11.70592 -11.66450
-11.35770 -11.29646 -11.12768 -10.86889 -10.27712 -10.08823 -10.03565 -9.44296
-8.66140 -8.34327 -6.12349 0.99711 1.27463 1.43892 1.44983 1.47110
1.57110 1.64138 2.26676 2.32072 2.97367 2.99596 3.32431 3.60924
3.65175 3.86032 3.96357 4.01740 4.11596 4.14309 4.16933 4.29082
4.31524 4.32658 4.35178 4.39653 4.51111 4.58305 4.61249 4.76670
4.79067 4.99435 5.02840 5.05692 5.09379 5.17731 5.27763 5.32255
5.35012 5.41675 5.42911 5.57453 5.83763 6.08809 6.19756 6.55543
7.06807 7.28611 8.74570
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.026639 B = 0.001829 C = 0.001761
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1050.825131 B =15306.290432 C =15894.531814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.013 3.987
3 Si 0.998 3.002
4 H -0.262 1.262
5 H -0.279 1.279
6 H -0.262 1.262
7 C -0.548 4.548
8 H 0.082 0.918
9 S -0.150 6.150
10 C -0.131 4.131
11 C 0.535 3.465
12 O -0.564 6.564
13 N -0.711 5.711
14 C 0.145 3.855
15 C -0.114 4.114
16 C 0.075 3.925
17 H 0.106 0.894
18 C -0.155 4.155
19 C -0.151 4.151
20 C 0.071 3.929
21 H 0.116 0.884
22 C -0.108 4.108
23 N -0.501 5.501
24 C 0.076 3.924
25 C -0.125 4.125
26 C -0.107 4.107
27 Cl -0.111 7.111
28 H 0.271 0.729
29 H 0.107 0.893
30 H 0.108 0.892
31 H 0.414 0.586
32 H 0.069 0.931
33 H 0.044 0.956
34 H 0.075 0.925
35 H 0.078 0.922
36 H 0.054 0.946
37 H 0.081 0.919
38 H 0.065 0.935
39 H 0.087 0.913
40 H 0.080 0.920
41 H 0.091 0.909
42 H 0.066 0.934
43 H 0.121 0.879
44 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.953 -29.485 1.405 31.485
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.191 4.191
3 Si 0.819 3.181
4 H -0.187 1.187
5 H -0.204 1.204
6 H -0.187 1.187
7 C -0.696 4.696
8 H 0.100 0.900
9 S 0.077 5.923
10 C -0.282 4.282
11 C 0.321 3.679
12 O -0.443 6.443
13 N -0.364 5.364
14 C 0.041 3.959
15 C -0.153 4.153
16 C -0.034 4.034
17 H 0.124 0.876
18 C -0.194 4.194
19 C -0.190 4.190
20 C -0.038 4.038
21 H 0.134 0.866
22 C -0.146 4.146
23 N -0.223 5.223
24 C -0.052 4.052
25 C -0.144 4.144
26 C -0.151 4.151
27 Cl -0.083 7.083
28 H 0.080 0.920
29 H 0.126 0.874
30 H 0.126 0.874
31 H 0.251 0.749
32 H 0.087 0.913
33 H 0.063 0.937
34 H 0.094 0.906
35 H 0.096 0.904
36 H 0.073 0.927
37 H 0.099 0.901
38 H 0.084 0.916
39 H 0.105 0.895
40 H 0.099 0.901
41 H 0.109 0.891
42 H 0.083 0.917
43 H 0.139 0.861
44 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 9.457 -29.657 1.683 31.174
hybrid contribution 1.042 1.285 -0.427 1.709
sum 10.500 -28.372 1.256 30.279
Atomic orbital electron populations
1.70176 1.07949 1.28657 1.47952 1.26123 0.95971 1.03301 0.93735
0.85013 0.77819 0.75727 0.79497 1.18650 1.20373 1.18683 1.23180
0.95346 0.92087 1.58957 0.89969 1.85543 1.10540 0.99141 1.97045
1.23388 1.03541 0.94633 1.06627 1.20026 0.86311 0.86604 0.74960
1.90677 1.17324 1.86051 1.50207 1.45897 1.10154 1.05073 1.75236
1.21182 0.98095 0.79915 0.96726 1.22005 1.01394 0.95181 0.96740
1.22958 0.88885 0.92825 0.98754 0.87580 1.22978 0.98845 1.01908
0.95675 1.22993 0.95651 1.02534 0.97778 1.23114 0.95696 0.96311
0.88701 0.86576 1.21940 0.98255 0.92997 1.01412 1.65486 1.37033
1.06286 1.13500 1.21208 0.93754 0.87393 1.02808 1.23017 0.97073
0.95248 0.99077 1.24554 0.89258 0.99582 1.01750 1.98374 1.34953
1.78383 1.96596 0.91999 0.87442 0.87355 0.74914 0.91338 0.93744
0.90611 0.90355 0.92714 0.90073 0.91598 0.89486 0.90099 0.89104
0.91654 0.86111 0.82321
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.11 13.22 21.65 0.29 -55.83 16
2 C 0.01 0.77 5.49 84.86 0.47 1.24 16
3 Si 1.00 43.64 29.55 68.60 2.03 45.67 16
4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16
5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16
6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16
7 C -0.55 -31.41 9.50 67.95 0.65 -30.76 16
8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16
9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16
10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16
11 C 0.54 19.66 7.81 87.66 0.68 20.34 16
12 O -0.56 -25.93 15.53 -3.02 -0.05 -25.98 16
13 N -0.71 -17.88 5.08 -442.10 -2.24 -20.12 16
14 C 0.15 3.20 2.09 45.08 0.09 3.29 16
15 C -0.11 -2.47 5.19 30.88 0.16 -2.31 16
16 C 0.07 1.19 3.68 45.35 0.17 1.36 16
17 H 0.11 1.49 7.98 -2.39 -0.02 1.47 16
18 C -0.15 -2.54 5.44 31.58 0.17 -2.37 16
19 C -0.15 -2.08 5.27 31.66 0.17 -1.91 16
20 C 0.07 0.87 3.53 45.44 0.16 1.03 16
21 H 0.12 1.06 7.12 -2.39 -0.02 1.04 16
22 C -0.11 -1.59 5.09 30.88 0.16 -1.43 16
23 N -0.50 -6.42 4.95 -831.68 -4.12 -10.54 16
24 C 0.08 0.70 5.10 85.55 0.44 1.14 16
25 C -0.12 -1.18 9.11 25.48 0.23 -0.95 16
26 C -0.11 -1.05 10.43 67.62 0.71 -0.35 16
27 Cl -0.11 -1.46 29.10 -2.72 -0.08 -1.54 16
28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16
29 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16
30 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16
31 H 0.41 7.69 8.60 -92.71 -0.80 6.89 16
32 H 0.07 1.87 4.94 -2.39 -0.01 1.86 16
33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16
35 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16
36 H 0.05 1.23 7.04 -2.38 -0.02 1.21 16
37 H 0.08 0.88 7.89 -2.39 -0.02 0.86 16
38 H 0.07 1.10 7.04 -2.39 -0.02 1.08 16
39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16
41 H 0.09 0.70 7.62 -2.39 -0.02 0.68 16
42 H 0.07 0.54 6.90 -2.38 -0.02 0.52 16
43 H 0.12 1.15 7.35 -2.91 -0.02 1.12 16
44 H 0.16 1.06 7.84 -2.91 -0.02 1.04 16
Total: -1.00 -74.69 376.64 -0.43 -75.13
By element:
Atomic # 1 Polarization: 18.95 SS G_CDS: 0.21 Total: 19.16 kcal
Atomic # 6 Polarization: -21.13 SS G_CDS: 4.69 Total: -16.44 kcal
Atomic # 7 Polarization: -80.42 SS G_CDS: -6.07 Total: -86.49 kcal
Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.98 kcal
Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal
Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal
Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal
Total: -74.69 -0.43 -75.13 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266643624.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.207 kcal
(2) G-P(sol) polarization free energy of solvation -74.692 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.919 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds