Wall clock time and date at job start Sat Apr 11 2020 07:02:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86808 * 119.99770 * 2 1
4 4 H 1.48503 * 109.46960 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.46905 * 299.99860 * 3 2 1
6 6 H 1.48490 * 109.47336 * 59.99707 * 3 2 1
7 7 C 1.38809 * 120.00459 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00529 * 179.97438 * 7 2 1
9 9 N 1.36941 * 119.99593 * 0.02562 * 7 2 1
10 10 C 1.47066 * 136.05541 * 180.02562 * 9 7 2
11 11 C 1.53504 * 88.04678 * 207.05070 * 10 9 7
12 12 O 1.42904 * 114.20529 * 220.37448 * 11 10 9
13 13 C 1.53000 * 114.20366 * 87.54725 * 11 10 9
14 14 N 1.46506 * 109.46749 * 185.00010 * 13 11 10
15 15 C 1.34767 * 119.99718 * 180.02562 * 14 13 11
16 16 O 1.21282 * 120.00364 * 0.02562 * 15 14 13
17 17 C 1.50709 * 120.00019 * 179.97438 * 15 14 13
18 18 C 1.50696 * 109.46901 * 180.02562 * 17 15 14
19 19 C 1.38247 * 119.97723 * 264.71574 * 18 17 15
20 20 C 1.38360 * 120.02407 * 179.76704 * 19 18 17
21 21 F 1.35097 * 120.00848 * 180.25957 * 20 19 18
22 22 C 1.38685 * 119.98101 * 0.54227 * 20 19 18
23 23 F 1.35100 * 120.02694 * 179.69660 * 22 20 19
24 24 C 1.38357 * 119.95460 * 359.72168 * 22 20 19
25 25 C 1.38421 * 119.97888 * 85.00412 * 18 17 15
26 26 F 1.35098 * 119.99191 * 359.97356 * 25 18 17
27 27 C 1.47064 * 136.05798 * 359.94252 * 9 7 2
28 28 H 0.97000 * 120.00117 * 0.02562 * 1 2 3
29 29 H 1.09002 * 113.46793 * 321.86042 * 10 9 7
30 30 H 1.08999 * 113.46805 * 92.24409 * 10 9 7
31 31 H 0.96700 * 113.99553 * 180.02562 * 12 11 10
32 32 H 1.08995 * 109.47181 * 304.99853 * 13 11 10
33 33 H 1.09002 * 109.47004 * 65.00367 * 13 11 10
34 34 H 0.96999 * 119.99544 * 359.97438 * 14 13 11
35 35 H 1.09000 * 109.46626 * 300.00106 * 17 15 14
36 36 H 1.08998 * 109.46608 * 59.99884 * 17 15 14
37 37 H 1.08005 * 119.98343 * 0.02562 * 19 18 17
38 38 H 1.08003 * 120.00989 * 180.02562 * 24 22 20
39 39 H 1.08999 * 113.47096 * 267.69901 * 27 9 7
40 40 H 1.09005 * 113.46966 * 38.08294 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3465 -0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8914 2.3965 1.2124
7 6 2.0104 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3257 -2.3880 0.0005
10 6 1.6801 -3.8153 0.0015
11 6 0.3420 -4.0941 -0.6972
12 8 -0.3321 -5.2632 -0.2269
13 6 0.3989 -3.9975 -2.2230
14 7 -0.9488 -4.1627 -2.7734
15 6 -1.1430 -4.1145 -4.1061
16 8 -0.2020 -3.9347 -4.8499
17 6 -2.5292 -4.2850 -4.6723
18 6 -2.4729 -4.1909 -6.1753
19 6 -2.7286 -2.9855 -6.8020
20 6 -2.6725 -2.8969 -8.1816
21 9 -2.9173 -1.7175 -8.7934
22 6 -2.3707 -4.0204 -8.9365
23 9 -2.3217 -3.9363 -10.2840
24 6 -2.1203 -5.2277 -8.3088
25 6 -2.1711 -5.3129 -6.9277
26 9 -1.9266 -6.4916 -6.3145
27 6 -0.0876 -2.7948 0.0011
28 1 -0.4850 0.8400 -0.0004
29 1 2.5484 -4.0474 -0.6153
30 1 1.7459 -4.2456 1.0008
31 1 -1.1744 -5.4361 -0.6693
32 1 0.7918 -3.0224 -2.5109
33 1 1.0490 -4.7808 -2.6127
34 1 -1.7011 -4.3076 -2.1785
35 1 -2.9219 -5.2601 -4.3840
36 1 -3.1795 -3.5018 -4.2829
37 1 -2.9682 -2.1117 -6.2141
38 1 -1.8847 -6.1031 -8.8958
39 1 -0.4932 -2.9538 1.0003
40 1 -0.7228 -2.1584 -0.6151
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001271360882.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:50
Heat of formation + Delta-G solvation = -128.274316 kcal
Electronic energy + Delta-G solvation = -29602.692411 eV
Core-core repulsion = 24777.497700 eV
Total energy + Delta-G solvation = -4825.194712 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-49.82127 -49.35740 -48.88650 -40.18230 -39.24045 -38.39955 -35.17500 -34.06543
-33.13860 -32.08307 -30.80655 -28.86698 -27.60533 -25.88038 -24.82909 -23.85208
-22.77839 -22.18685 -20.52925 -19.10856 -18.67031 -18.27854 -17.92111 -17.51240
-16.90138 -16.74287 -16.41427 -16.03898 -15.76796 -15.49680 -15.40845 -15.27205
-14.91213 -14.79831 -14.71931 -14.32089 -14.15687 -13.88616 -13.62430 -13.27950
-13.10526 -12.69745 -12.56885 -12.32733 -11.99054 -11.91088 -11.78546 -11.74278
-11.14528 -11.05633 -10.94707 -10.52831 -10.11871 -9.96636 -9.64760 -9.48858
-9.13815 -8.92573 -8.89080 -8.87888 -7.02241 -5.87735 -3.21268 0.34542
0.44935 2.63490 2.66784 3.22779 3.27508 3.34556 3.40200 3.42496
3.61054 3.95341 4.01587 4.08904 4.28116 4.53144 4.58042 4.73302
4.89698 5.02211 5.06628 5.11933 5.14674 5.25183 5.27732 5.35897
5.50840 5.54709 5.63195 5.86830 6.21033 6.26660 6.36027 6.43300
6.50650 6.54283 6.98492 7.04819 7.38382 7.47453 7.84260 7.95796
8.23001 8.92787 9.59208 10.48857 11.29647
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.012463 B = 0.002773 C = 0.002386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2246.159374 B =10096.631394 C =11734.041197
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.005 4.005
3 Si 0.915 3.085
4 H -0.278 1.278
5 H -0.289 1.289
6 H -0.289 1.289
7 C -0.218 4.218
8 H 0.085 0.915
9 N -0.602 5.602
10 C 0.138 3.862
11 C 0.049 3.951
12 O -0.550 6.550
13 C 0.129 3.871
14 N -0.721 5.721
15 C 0.516 3.484
16 O -0.531 6.531
17 C -0.105 4.105
18 C -0.076 4.076
19 C -0.083 4.083
20 C 0.062 3.938
21 F -0.123 7.123
22 C 0.097 3.903
23 F -0.121 7.121
24 C -0.163 4.163
25 C 0.138 3.862
26 F -0.122 7.122
27 C 0.138 3.862
28 H 0.254 0.746
29 H 0.049 0.951
30 H 0.047 0.953
31 H 0.362 0.638
32 H 0.095 0.905
33 H 0.068 0.932
34 H 0.397 0.603
35 H 0.113 0.887
36 H 0.117 0.883
37 H 0.159 0.841
38 H 0.159 0.841
39 H 0.034 0.966
40 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.744 -12.062 -13.632 21.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.202 4.202
3 Si 0.745 3.255
4 H -0.203 1.203
5 H -0.216 1.216
6 H -0.216 1.216
7 C -0.344 4.344
8 H 0.103 0.897
9 N -0.330 5.330
10 C 0.011 3.989
11 C 0.007 3.993
12 O -0.354 6.354
13 C 0.006 3.994
14 N -0.374 5.374
15 C 0.301 3.699
16 O -0.408 6.408
17 C -0.145 4.145
18 C -0.078 4.078
19 C -0.102 4.102
20 C 0.042 3.958
21 F -0.102 7.102
22 C 0.076 3.924
23 F -0.100 7.100
24 C -0.182 4.182
25 C 0.118 3.882
26 F -0.100 7.100
27 C 0.011 3.989
28 H 0.064 0.936
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.208 0.792
32 H 0.114 0.886
33 H 0.087 0.913
34 H 0.231 0.769
35 H 0.131 0.869
36 H 0.135 0.865
37 H 0.177 0.823
38 H 0.177 0.823
39 H 0.052 0.948
40 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -9.452 -11.590 -13.824 20.366
hybrid contribution -0.396 0.927 -0.128 1.016
sum -9.848 -10.663 -13.952 20.133
Atomic orbital electron populations
1.69824 1.05054 1.25400 1.56244 1.24806 0.95749 0.97635 1.02028
0.86002 0.78839 0.83363 0.77309 1.20290 1.21575 1.21637 1.18952
0.90216 0.80844 1.44430 0.89703 1.45236 1.02511 0.99178 1.86059
1.22330 0.92653 0.86455 0.97442 1.23886 0.97585 0.86178 0.91653
1.86591 1.37557 1.46329 1.64876 1.21544 0.82642 1.03711 0.91537
1.45835 1.11093 1.73719 1.06710 1.20196 0.90368 0.76966 0.82351
1.90753 1.43452 1.48125 1.58430 1.20651 0.96828 1.06454 0.90567
1.19198 1.01247 0.91875 0.95492 1.20847 0.99023 0.98550 0.91739
1.17539 1.06020 0.81264 0.91000 1.91561 1.91840 1.43775 1.82977
1.17220 1.04193 0.93287 0.77673 1.91561 1.93865 1.96743 1.27804
1.20880 1.05451 0.98254 0.93665 1.17018 0.99865 0.81709 0.89605
1.91549 1.91360 1.44235 1.82873 1.22746 0.89515 0.89326 0.97273
0.93625 0.93328 0.93497 0.79179 0.88645 0.91344 0.76897 0.86888
0.86461 0.82329 0.82298 0.94842 0.90703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.23 11.51 55.49 0.64 -25.59 16
2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16
3 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16
4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
7 C -0.22 -5.94 10.75 -15.06 -0.16 -6.10 16
8 H 0.09 2.24 7.83 -52.49 -0.41 1.83 16
9 N -0.60 -14.90 3.56 -184.53 -0.66 -15.56 16
10 C 0.14 2.81 8.10 -8.50 -0.07 2.75 16
11 C 0.05 0.87 1.74 -90.03 -0.16 0.71 16
12 O -0.55 -8.37 13.56 -35.23 -0.48 -8.85 16
13 C 0.13 2.15 5.32 -4.04 -0.02 2.13 16
14 N -0.72 -9.26 5.32 -60.29 -0.32 -9.58 16
15 C 0.52 6.86 7.82 -10.99 -0.09 6.78 16
16 O -0.53 -9.44 16.03 5.56 0.09 -9.35 16
17 C -0.11 -0.90 5.60 -29.03 -0.16 -1.06 16
18 C -0.08 -0.75 4.38 -104.55 -0.46 -1.21 16
19 C -0.08 -0.80 9.65 -39.53 -0.38 -1.18 16
20 C 0.06 0.66 7.31 -39.37 -0.29 0.37 16
21 F -0.12 -1.43 17.18 2.25 0.04 -1.39 16
22 C 0.10 0.99 7.31 -39.37 -0.29 0.70 16
23 F -0.12 -1.31 17.18 2.25 0.04 -1.27 16
24 C -0.16 -1.49 10.00 -39.46 -0.39 -1.88 16
25 C 0.14 1.39 7.24 -39.43 -0.29 1.10 16
26 F -0.12 -1.28 16.56 2.25 0.04 -1.24 16
27 C 0.14 3.04 6.81 -8.43 -0.06 2.99 16
28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
29 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16
30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.36 3.83 7.50 45.56 0.34 4.17 16
32 H 0.10 1.98 7.94 -51.93 -0.41 1.56 16
33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
34 H 0.40 3.79 7.24 -40.82 -0.30 3.50 16
35 H 0.11 0.69 7.79 -51.93 -0.40 0.29 16
36 H 0.12 0.71 8.05 -51.93 -0.42 0.29 16
37 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16
38 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16
39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
40 H 0.07 1.79 7.10 -51.93 -0.37 1.42 16
LS Contribution 359.72 15.07 5.42 5.42
Total: -1.00 -33.75 359.72 -6.76 -40.51
By element:
Atomic # 1 Polarization: 7.96 SS G_CDS: -3.64 Total: 4.32 kcal
Atomic # 6 Polarization: 8.76 SS G_CDS: -2.91 Total: 5.85 kcal
Atomic # 7 Polarization: -50.39 SS G_CDS: -0.34 Total: -50.73 kcal
Atomic # 8 Polarization: -17.81 SS G_CDS: -0.39 Total: -18.20 kcal
Atomic # 9 Polarization: -4.02 SS G_CDS: 0.11 Total: -3.90 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -33.75 -6.76 -40.51 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271360882.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.764 kcal
(2) G-P(sol) polarization free energy of solvation -33.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.514 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds