Wall clock time and date at job start Sat Apr 11 2020 07:02:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86808 * 119.99770 * 2 1
4 4 H 1.48503 * 109.46960 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.46905 * 299.99860 * 3 2 1
6 6 H 1.48490 * 109.47336 * 59.99707 * 3 2 1
7 7 C 1.38809 * 120.00459 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00529 * 179.97438 * 7 2 1
9 9 N 1.36941 * 119.99593 * 0.02562 * 7 2 1
10 10 C 1.47066 * 136.05541 * 180.02562 * 9 7 2
11 11 C 1.53504 * 88.04678 * 207.05070 * 10 9 7
12 12 O 1.42904 * 114.20529 * 220.37448 * 11 10 9
13 13 C 1.53000 * 114.20366 * 87.54725 * 11 10 9
14 14 N 1.46506 * 109.46749 * 185.00010 * 13 11 10
15 15 C 1.34767 * 119.99718 * 180.02562 * 14 13 11
16 16 O 1.21282 * 120.00364 * 0.02562 * 15 14 13
17 17 C 1.50709 * 120.00019 * 179.97438 * 15 14 13
18 18 C 1.50696 * 109.46901 * 180.02562 * 17 15 14
19 19 C 1.38247 * 119.97723 * 264.71574 * 18 17 15
20 20 C 1.38360 * 120.02407 * 179.76704 * 19 18 17
21 21 F 1.35097 * 120.00848 * 180.25957 * 20 19 18
22 22 C 1.38685 * 119.98101 * 0.54227 * 20 19 18
23 23 F 1.35100 * 120.02694 * 179.69660 * 22 20 19
24 24 C 1.38357 * 119.95460 * 359.72168 * 22 20 19
25 25 C 1.38421 * 119.97888 * 85.00412 * 18 17 15
26 26 F 1.35098 * 119.99191 * 359.97356 * 25 18 17
27 27 C 1.47064 * 136.05798 * 359.94252 * 9 7 2
28 28 H 0.97000 * 120.00117 * 0.02562 * 1 2 3
29 29 H 1.09002 * 113.46793 * 321.86042 * 10 9 7
30 30 H 1.08999 * 113.46805 * 92.24409 * 10 9 7
31 31 H 0.96700 * 113.99553 * 180.02562 * 12 11 10
32 32 H 1.08995 * 109.47181 * 304.99853 * 13 11 10
33 33 H 1.09002 * 109.47004 * 65.00367 * 13 11 10
34 34 H 0.96999 * 119.99544 * 359.97438 * 14 13 11
35 35 H 1.09000 * 109.46626 * 300.00106 * 17 15 14
36 36 H 1.08998 * 109.46608 * 59.99884 * 17 15 14
37 37 H 1.08005 * 119.98343 * 0.02562 * 19 18 17
38 38 H 1.08003 * 120.00989 * 180.02562 * 24 22 20
39 39 H 1.08999 * 113.47096 * 267.69901 * 27 9 7
40 40 H 1.09005 * 113.46966 * 38.08294 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3465 -0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8914 2.3965 1.2124
7 6 2.0104 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3257 -2.3880 0.0005
10 6 1.6801 -3.8153 0.0015
11 6 0.3420 -4.0941 -0.6972
12 8 -0.3321 -5.2632 -0.2269
13 6 0.3989 -3.9975 -2.2230
14 7 -0.9488 -4.1627 -2.7734
15 6 -1.1430 -4.1145 -4.1061
16 8 -0.2020 -3.9347 -4.8499
17 6 -2.5292 -4.2850 -4.6723
18 6 -2.4729 -4.1909 -6.1753
19 6 -2.7286 -2.9855 -6.8020
20 6 -2.6725 -2.8969 -8.1816
21 9 -2.9173 -1.7175 -8.7934
22 6 -2.3707 -4.0204 -8.9365
23 9 -2.3217 -3.9363 -10.2840
24 6 -2.1203 -5.2277 -8.3088
25 6 -2.1711 -5.3129 -6.9277
26 9 -1.9266 -6.4916 -6.3145
27 6 -0.0876 -2.7948 0.0011
28 1 -0.4850 0.8400 -0.0004
29 1 2.5484 -4.0474 -0.6153
30 1 1.7459 -4.2456 1.0008
31 1 -1.1744 -5.4361 -0.6693
32 1 0.7918 -3.0224 -2.5109
33 1 1.0490 -4.7808 -2.6127
34 1 -1.7011 -4.3076 -2.1785
35 1 -2.9219 -5.2601 -4.3840
36 1 -3.1795 -3.5018 -4.2829
37 1 -2.9682 -2.1117 -6.2141
38 1 -1.8847 -6.1031 -8.8958
39 1 -0.4932 -2.9538 1.0003
40 1 -0.7228 -2.1584 -0.6151
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001271360882.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:50
Heat of formation + Delta-G solvation = -152.653764 kcal
Electronic energy + Delta-G solvation = -29603.749584 eV
Core-core repulsion = 24777.497700 eV
Total energy + Delta-G solvation = -4826.251884 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.64612 -50.13229 -49.72145 -41.34563 -40.47304 -39.45443 -36.68554 -35.27564
-34.09046 -33.89515 -31.56692 -30.22130 -28.98581 -27.27072 -26.52356 -24.62805
-24.25776 -23.32885 -21.60185 -20.67516 -19.47394 -19.06007 -19.02652 -18.70639
-18.36850 -17.76613 -17.47061 -17.17771 -16.81218 -16.60692 -16.49308 -16.28268
-16.11199 -15.84492 -15.72637 -15.54163 -15.31683 -15.16055 -14.89211 -14.46528
-14.34322 -14.11005 -13.78173 -13.43215 -13.35615 -12.97897 -12.88203 -12.84622
-12.79402 -12.70140 -12.51095 -12.15434 -11.92259 -11.53429 -11.11840 -10.90342
-10.64660 -10.24774 -10.14447 -9.69795 -8.99216 -7.95128 -5.29001 -0.43659
-0.28510 1.45681 1.46295 1.56169 1.61331 1.83396 2.25395 2.42129
2.51052 2.85010 3.09599 3.22112 3.24690 3.26356 3.37992 3.44410
3.53644 3.79923 3.85666 3.90195 4.25409 4.36512 4.41473 4.42793
4.60504 4.65849 4.68836 4.78912 4.82440 4.85643 4.91716 4.94103
5.16919 5.30910 5.33657 5.46376 5.51531 5.86257 6.47134 6.81913
6.87199 7.21783 7.54531 8.52123 9.21997
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.012463 B = 0.002773 C = 0.002386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2246.159374 B =10096.631394 C =11734.041197
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.946 5.946
2 C -0.060 4.060
3 Si 0.977 3.023
4 H -0.266 1.266
5 H -0.292 1.292
6 H -0.291 1.291
7 C -0.229 4.229
8 H 0.086 0.914
9 N -0.631 5.631
10 C 0.130 3.870
11 C 0.092 3.908
12 O -0.546 6.546
13 C 0.143 3.857
14 N -0.712 5.712
15 C 0.513 3.487
16 O -0.580 6.580
17 C -0.096 4.096
18 C -0.083 4.083
19 C -0.083 4.083
20 C 0.048 3.952
21 F -0.133 7.133
22 C 0.088 3.912
23 F -0.127 7.127
24 C -0.157 4.157
25 C 0.130 3.870
26 F -0.124 7.124
27 C 0.138 3.862
28 H 0.250 0.750
29 H 0.060 0.940
30 H 0.052 0.948
31 H 0.387 0.613
32 H 0.052 0.948
33 H 0.074 0.926
34 H 0.415 0.585
35 H 0.146 0.854
36 H 0.149 0.851
37 H 0.174 0.826
38 H 0.180 0.820
39 H 0.020 0.980
40 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.472 -13.396 -13.656 22.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.254 4.254
3 Si 0.805 3.195
4 H -0.190 1.190
5 H -0.219 1.219
6 H -0.218 1.218
7 C -0.357 4.357
8 H 0.104 0.896
9 N -0.359 5.359
10 C 0.004 3.996
11 C 0.049 3.951
12 O -0.352 6.352
13 C 0.018 3.982
14 N -0.365 5.365
15 C 0.301 3.699
16 O -0.460 6.460
17 C -0.135 4.135
18 C -0.084 4.084
19 C -0.101 4.101
20 C 0.027 3.973
21 F -0.112 7.112
22 C 0.068 3.932
23 F -0.106 7.106
24 C -0.176 4.176
25 C 0.111 3.889
26 F -0.102 7.102
27 C 0.011 3.989
28 H 0.059 0.941
29 H 0.078 0.922
30 H 0.070 0.930
31 H 0.237 0.763
32 H 0.071 0.929
33 H 0.092 0.908
34 H 0.253 0.747
35 H 0.163 0.837
36 H 0.166 0.834
37 H 0.191 0.809
38 H 0.198 0.802
39 H 0.038 0.962
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -10.217 -12.973 -13.832 21.541
hybrid contribution -0.176 1.247 -0.110 1.264
sum -10.394 -11.727 -13.942 20.974
Atomic orbital electron populations
1.69975 1.06205 1.25644 1.57588 1.25577 0.96647 1.00603 1.02535
0.85035 0.78291 0.79428 0.76736 1.19050 1.21911 1.21751 1.19288
0.90708 0.82255 1.43427 0.89612 1.45494 1.03985 1.00273 1.86168
1.22492 0.94674 0.84229 0.98216 1.23099 0.95482 0.85032 0.91509
1.86554 1.39086 1.44329 1.65223 1.21116 0.84831 1.01519 0.90713
1.45689 1.10172 1.73419 1.07246 1.21030 0.91763 0.75359 0.81791
1.90739 1.45517 1.50243 1.59483 1.20741 0.93913 1.09456 0.89413
1.19385 1.01026 0.91739 0.96287 1.21039 0.98538 0.99138 0.91429
1.17766 1.06799 0.81104 0.91605 1.91531 1.92041 1.44361 1.83221
1.17351 1.04703 0.93692 0.77484 1.91543 1.93985 1.96803 1.28242
1.21062 1.04366 0.98512 0.93659 1.17166 1.00013 0.81783 0.89978
1.91543 1.91426 1.44345 1.82912 1.22710 0.88182 0.91326 0.96661
0.94136 0.92191 0.93036 0.76282 0.92945 0.90759 0.74732 0.83655
0.83358 0.80860 0.80217 0.96207 0.92898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -54.94 11.51 21.65 0.25 -54.69 16
2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16
3 Si 0.98 45.11 29.55 68.60 2.03 47.14 16
4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
6 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16
7 C -0.23 -12.63 10.75 84.03 0.90 -11.73 16
8 H 0.09 4.56 7.83 -2.91 -0.02 4.53 16
9 N -0.63 -31.52 3.56 -738.14 -2.63 -34.15 16
10 C 0.13 5.19 8.10 83.18 0.67 5.87 16
11 C 0.09 3.11 1.74 -10.41 -0.02 3.09 16
12 O -0.55 -14.93 13.56 -148.98 -2.02 -16.95 16
13 C 0.14 4.64 5.32 86.38 0.46 5.10 16
14 N -0.71 -16.81 5.32 -463.05 -2.46 -19.27 16
15 C 0.51 12.65 7.82 87.66 0.69 13.34 16
16 O -0.58 -20.24 16.03 -3.04 -0.05 -20.28 16
17 C -0.10 -1.34 5.60 29.10 0.16 -1.18 16
18 C -0.08 -1.46 4.38 -19.82 -0.09 -1.54 16
19 C -0.08 -1.48 9.65 22.30 0.22 -1.27 16
20 C 0.05 0.98 7.31 22.41 0.16 1.15 16
21 F -0.13 -3.08 17.18 44.97 0.77 -2.30 16
22 C 0.09 1.74 7.31 22.40 0.16 1.90 16
23 F -0.13 -2.69 17.18 44.97 0.77 -1.92 16
24 C -0.16 -2.63 10.00 22.35 0.22 -2.41 16
25 C 0.13 2.38 7.24 22.37 0.16 2.54 16
26 F -0.12 -2.32 16.56 44.97 0.74 -1.58 16
27 C 0.14 6.09 6.81 83.23 0.57 6.65 16
28 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16
29 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16
30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
31 H 0.39 6.63 7.50 -74.06 -0.56 6.08 16
32 H 0.05 2.20 7.94 -2.39 -0.02 2.18 16
33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16
34 H 0.42 6.64 7.24 -92.71 -0.67 5.97 16
35 H 0.15 1.14 7.79 -2.39 -0.02 1.12 16
36 H 0.15 1.19 8.05 -2.39 -0.02 1.18 16
37 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16
38 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16
39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
40 H 0.05 2.56 7.10 -2.38 -0.02 2.54 16
Total: -1.00 -74.86 359.72 2.05 -72.81
By element:
Atomic # 1 Polarization: 12.65 SS G_CDS: -0.10 Total: 12.55 kcal
Atomic # 6 Polarization: 13.90 SS G_CDS: 4.74 Total: 18.64 kcal
Atomic # 7 Polarization: -103.26 SS G_CDS: -4.85 Total: -108.11 kcal
Atomic # 8 Polarization: -35.17 SS G_CDS: -2.07 Total: -37.24 kcal
Atomic # 9 Polarization: -8.09 SS G_CDS: 2.29 Total: -5.80 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Total: -74.86 2.05 -72.81 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271360882.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.844 kcal
(2) G-P(sol) polarization free energy of solvation -74.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds