Wall clock time and date at job start Sat Apr 11 2020 07:03:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 O 1.42101 * 110.54257 * 2 1
4 4 O 1.42099 * 110.54411 * 223.24463 * 2 1 3
5 5 N 1.65603 * 104.44777 * 111.62255 * 2 1 3
6 6 C 1.39663 * 120.00287 * 60.01057 * 5 2 1
7 7 C 1.38951 * 120.05985 * 35.49580 * 6 5 2
8 8 C 1.38096 * 119.97657 * 180.29919 * 7 6 5
9 9 C 1.38275 * 120.09516 * 359.97438 * 8 7 6
10 10 C 1.38494 * 120.12635 * 0.02562 * 9 8 7
11 11 F 1.35099 * 119.99034 * 179.97438 * 10 9 8
12 12 C 1.38344 * 120.02388 * 0.02562 * 10 9 8
13 13 C 1.50699 * 120.04956 * 179.97438 * 12 10 9
14 14 N 1.46498 * 109.47555 * 269.97902 * 13 12 10
15 15 C 1.34775 * 120.00070 * 179.97438 * 14 13 12
16 16 O 1.21277 * 120.00018 * 0.02562 * 15 14 13
17 17 C 1.50704 * 119.99547 * 179.97438 * 15 14 13
18 18 C 1.53003 * 109.46763 * 180.02562 * 17 15 14
19 19 C 1.50699 * 109.47219 * 179.97438 * 18 17 15
20 20 H 1.08002 * 119.99645 * 0.02562 * 19 18 17
21 21 C 1.37878 * 120.00016 * 179.97438 * 19 18 17
22 22 N 1.31511 * 119.99737 * 180.02562 * 21 19 18
23 23 Si 1.86797 * 119.99998 * 0.02562 * 21 19 18
24 24 H 1.48499 * 109.47302 * 89.99586 * 23 21 19
25 25 H 1.48501 * 109.46880 * 209.99654 * 23 21 19
26 26 H 1.48505 * 109.47318 * 329.99492 * 23 21 19
27 27 H 1.09005 * 109.47552 * 308.37602 * 1 2 3
28 28 H 1.09000 * 109.47362 * 68.37845 * 1 2 3
29 29 H 1.09003 * 109.47261 * 188.37844 * 1 2 3
30 30 H 0.97010 * 119.99744 * 240.00632 * 5 2 1
31 31 H 1.07995 * 120.01152 * 0.26479 * 7 6 5
32 32 H 1.08001 * 119.95269 * 179.97438 * 8 7 6
33 33 H 1.08003 * 119.93612 * 180.02562 * 9 8 7
34 34 H 1.08995 * 109.46683 * 29.98198 * 13 12 10
35 35 H 1.09002 * 109.47112 * 149.97735 * 13 12 10
36 36 H 0.97008 * 119.99654 * 359.97438 * 14 13 12
37 37 H 1.09001 * 109.47001 * 299.99492 * 17 15 14
38 38 H 1.08991 * 109.47228 * 60.00410 * 17 15 14
39 39 H 1.09004 * 109.47369 * 300.00066 * 18 17 15
40 40 H 1.09002 * 109.47289 * 59.99911 * 18 17 15
41 41 H 0.97001 * 119.99914 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9693 -0.9116
5 7 2.2271 -0.5909 1.4908
6 6 1.8160 -1.8696 1.8737
7 6 1.7482 -2.8898 0.9328
8 6 1.3355 -4.1519 1.3121
9 6 0.9899 -4.4023 2.6273
10 6 1.0559 -3.3885 3.5685
11 9 0.7171 -3.6361 4.8527
12 6 1.4677 -2.1219 3.1939
13 6 1.5392 -1.0182 4.2175
14 7 0.2540 -0.3171 4.2703
15 6 0.0835 0.7143 5.1210
16 8 0.9941 1.0623 5.8423
17 6 -1.2385 1.4359 5.1749
18 6 -1.1659 2.5564 6.2142
19 6 -2.4876 3.2784 6.2677
20 1 -3.2985 2.9687 5.6250
21 6 -2.6620 4.3336 7.1378
22 7 -3.8156 4.9633 7.1848
23 14 -1.2597 4.8687 8.2499
24 1 -0.4438 5.8981 7.5572
25 1 -1.8129 5.4377 9.5050
26 1 -0.4077 3.6957 8.5715
27 1 -0.3634 0.6380 0.8057
28 1 -0.3634 0.3787 -0.9553
29 1 -0.3634 -1.0167 0.1497
30 1 2.7549 -0.0490 2.0981
31 1 2.0176 -2.6956 -0.0948
32 1 1.2825 -4.9444 0.5803
33 1 0.6678 -5.3904 2.9212
34 1 1.7613 -1.4440 5.1959
35 1 2.3251 -0.3157 3.9400
36 1 -0.4743 -0.5952 3.6930
37 1 -1.4599 1.8622 4.1964
38 1 -2.0247 0.7336 5.4516
39 1 -0.9442 2.1305 7.1928
40 1 -0.3797 3.2586 5.9370
41 1 -3.9382 5.7059 7.7967
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001327618335.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:54
Heat of formation + Delta-G solvation = -126.938522 kcal
Electronic energy + Delta-G solvation = -27936.870781 eV
Core-core repulsion = 23665.574380 eV
Total energy + Delta-G solvation = -4271.296401 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.104 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-49.29137 -40.38657 -39.15329 -37.64434 -36.52454 -35.66326 -34.86090 -33.51800
-31.77244 -31.05640 -29.97819 -29.64626 -27.19398 -25.38731 -23.30175 -22.24738
-21.22990 -20.11358 -19.84927 -18.75940 -18.38584 -17.43337 -17.01040 -16.73495
-16.50710 -16.28639 -16.14087 -15.78074 -15.51424 -15.39240 -15.18337 -14.15201
-14.01769 -13.83362 -13.73391 -13.66897 -13.51866 -13.32794 -13.16243 -12.98837
-12.63856 -12.58962 -12.53406 -12.22287 -11.80297 -11.69656 -11.58807 -11.45078
-11.18802 -10.98626 -10.20956 -10.08817 -9.83200 -9.60572 -9.22322 -9.09502
-9.04009 -8.87584 -8.52824 -6.05267 -4.04277 -0.38324 0.54974 0.63839
1.97371 2.87940 3.02232 3.18713 3.36809 3.43462 3.49819 3.54137
3.64278 3.80667 4.08123 4.18084 4.33448 4.39212 4.48424 4.49182
4.53171 4.84905 5.12089 5.19883 5.24027 5.30380 5.35235 5.52121
5.58897 5.63796 5.71285 5.88316 6.00463 6.03282 6.19343 6.40886
6.45296 6.63107 7.32748 7.39871 7.63244 7.76228 8.45628 8.55728
8.97236 9.57766 11.07501
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.012415 B = 0.003066 C = 0.002657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2254.859337 B = 9128.766876 C =10537.604430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.667 4.667
2 S 2.607 3.393
3 O -0.943 6.943
4 O -0.949 6.949
5 N -1.054 6.054
6 C 0.201 3.799
7 C -0.190 4.190
8 C -0.053 4.053
9 C -0.172 4.172
10 C 0.144 3.856
11 F -0.127 7.127
12 C -0.165 4.165
13 C 0.164 3.836
14 N -0.738 5.738
15 C 0.510 3.490
16 O -0.536 6.536
17 C -0.122 4.122
18 C 0.001 3.999
19 C -0.526 4.526
20 H 0.072 0.928
21 C 0.069 3.931
22 N -0.903 5.903
23 Si 0.878 3.122
24 H -0.276 1.276
25 H -0.288 1.288
26 H -0.261 1.261
27 H 0.138 0.862
28 H 0.137 0.863
29 H 0.132 0.868
30 H 0.431 0.569
31 H 0.170 0.830
32 H 0.142 0.858
33 H 0.141 0.859
34 H 0.081 0.919
35 H 0.075 0.925
36 H 0.398 0.602
37 H 0.085 0.915
38 H 0.087 0.913
39 H 0.024 0.976
40 H 0.020 0.980
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.196 -21.077 -17.482 29.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.818 4.818
2 S 2.701 3.299
3 O -0.933 6.933
4 O -0.939 6.939
5 N -0.803 5.803
6 C 0.103 3.897
7 C -0.211 4.211
8 C -0.072 4.072
9 C -0.192 4.192
10 C 0.123 3.877
11 F -0.105 7.105
12 C -0.171 4.171
13 C 0.040 3.960
14 N -0.393 5.393
15 C 0.299 3.701
16 O -0.411 6.411
17 C -0.162 4.162
18 C -0.037 4.037
19 C -0.564 4.564
20 H 0.090 0.910
21 C -0.132 4.132
22 N -0.542 5.542
23 Si 0.705 3.295
24 H -0.202 1.202
25 H -0.214 1.214
26 H -0.185 1.185
27 H 0.157 0.843
28 H 0.155 0.845
29 H 0.151 0.849
30 H 0.270 0.730
31 H 0.187 0.813
32 H 0.160 0.840
33 H 0.159 0.841
34 H 0.099 0.901
35 H 0.093 0.907
36 H 0.232 0.768
37 H 0.104 0.896
38 H 0.105 0.895
39 H 0.042 0.958
40 H 0.038 0.962
41 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 11.301 -20.387 -17.613 29.216
hybrid contribution -0.179 0.231 1.230 1.265
sum 11.123 -20.155 -16.383 28.255
Atomic orbital electron populations
1.30450 1.26335 1.12387 1.12660 1.05179 0.78204 0.73941 0.72579
1.93680 1.78159 1.36715 1.84739 1.93554 1.77495 1.61077 1.61727
1.53628 1.65537 1.22391 1.38736 1.17021 0.95714 0.84399 0.92540
1.22069 1.04581 0.92247 1.02216 1.20936 0.94660 0.96426 0.95131
1.21240 1.05217 0.99481 0.93276 1.17347 0.98028 0.93047 0.79280
1.91563 1.89341 1.94614 1.35008 1.19804 1.07100 0.94959 0.95190
1.19873 0.87683 0.91294 0.97178 1.46224 1.14498 1.35018 1.43555
1.21608 0.91445 0.78825 0.78237 1.90669 1.43823 1.65286 1.41317
1.21686 0.91936 0.99277 1.03277 1.19378 0.97660 0.92734 0.93903
1.21092 0.97467 1.15041 1.22773 0.90967 1.24971 0.95567 0.95951
0.96733 1.69908 1.23760 1.22411 1.38107 0.86794 0.82850 0.79569
0.80323 1.20208 1.21432 1.18532 0.84323 0.84505 0.84905 0.72987
0.81293 0.83993 0.84150 0.90118 0.90686 0.76799 0.89638 0.89481
0.95773 0.96213 0.92690
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.67 -3.02 10.71 101.05 1.08 -1.94 16
2 S 2.61 19.11 5.87 -107.50 -0.63 18.48 16
3 O -0.94 -10.79 18.08 -57.54 -1.04 -11.83 16
4 O -0.95 -8.68 15.05 -57.54 -0.87 -9.55 16
5 N -1.05 -7.56 5.38 32.41 0.17 -7.39 16
6 C 0.20 1.49 6.10 -83.80 -0.51 0.98 16
7 C -0.19 -1.24 9.25 -39.37 -0.36 -1.61 16
8 C -0.05 -0.28 10.04 -39.62 -0.40 -0.68 16
9 C -0.17 -1.08 10.02 -39.47 -0.40 -1.48 16
10 C 0.14 1.23 7.24 -39.45 -0.29 0.94 16
11 F -0.13 -1.34 16.47 2.25 0.04 -1.30 16
12 C -0.17 -1.42 5.27 -104.36 -0.55 -1.97 16
13 C 0.16 1.79 5.37 -5.20 -0.03 1.76 16
14 N -0.74 -8.92 5.55 -61.47 -0.34 -9.26 16
15 C 0.51 8.75 7.83 -10.98 -0.09 8.66 16
16 O -0.54 -11.38 15.98 5.56 0.09 -11.29 16
17 C -0.12 -2.26 5.64 -27.88 -0.16 -2.41 16
18 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16
19 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16
20 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16
21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16
22 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16
23 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16
24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
26 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16
27 H 0.14 0.62 8.14 -51.92 -0.42 0.19 16
28 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16
29 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16
30 H 0.43 2.98 7.33 -34.47 -0.25 2.73 16
31 H 0.17 1.12 5.18 -52.49 -0.27 0.85 16
32 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16
33 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16
34 H 0.08 1.00 7.64 -51.93 -0.40 0.60 16
35 H 0.08 0.79 6.53 -51.93 -0.34 0.45 16
36 H 0.40 3.70 8.46 -40.82 -0.35 3.35 16
37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16
38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
39 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16
40 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16
41 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16
LS Contribution 363.45 15.07 5.48 5.48
Total: -1.00 -38.78 363.45 -8.13 -46.90
By element:
Atomic # 1 Polarization: 4.93 SS G_CDS: -4.91 Total: 0.02 kcal
Atomic # 6 Polarization: -8.83 SS G_CDS: -2.22 Total: -11.04 kcal
Atomic # 7 Polarization: -44.29 SS G_CDS: 0.61 Total: -43.69 kcal
Atomic # 8 Polarization: -30.85 SS G_CDS: -1.82 Total: -32.67 kcal
Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal
Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal
Atomic # 16 Polarization: 19.11 SS G_CDS: -0.63 Total: 18.48 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -38.78 -8.13 -46.90 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327618335.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.035 kcal
(2) G-P(sol) polarization free energy of solvation -38.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds