Wall clock time and date at job start Sat Apr 11 2020 07:03:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 O 1.42101 * 110.54257 * 2 1
4 4 O 1.42099 * 110.54411 * 223.24463 * 2 1 3
5 5 N 1.65603 * 104.44777 * 111.62255 * 2 1 3
6 6 C 1.39663 * 120.00287 * 60.01057 * 5 2 1
7 7 C 1.38951 * 120.05985 * 35.49580 * 6 5 2
8 8 C 1.38096 * 119.97657 * 180.29919 * 7 6 5
9 9 C 1.38275 * 120.09516 * 359.97438 * 8 7 6
10 10 C 1.38494 * 120.12635 * 0.02562 * 9 8 7
11 11 F 1.35099 * 119.99034 * 179.97438 * 10 9 8
12 12 C 1.38344 * 120.02388 * 0.02562 * 10 9 8
13 13 C 1.50699 * 120.04956 * 179.97438 * 12 10 9
14 14 N 1.46498 * 109.47555 * 269.97902 * 13 12 10
15 15 C 1.34775 * 120.00070 * 179.97438 * 14 13 12
16 16 O 1.21277 * 120.00018 * 0.02562 * 15 14 13
17 17 C 1.50704 * 119.99547 * 179.97438 * 15 14 13
18 18 C 1.53003 * 109.46763 * 180.02562 * 17 15 14
19 19 C 1.50699 * 109.47219 * 179.97438 * 18 17 15
20 20 H 1.08002 * 119.99645 * 0.02562 * 19 18 17
21 21 C 1.37878 * 120.00016 * 179.97438 * 19 18 17
22 22 N 1.31511 * 119.99737 * 180.02562 * 21 19 18
23 23 Si 1.86797 * 119.99998 * 0.02562 * 21 19 18
24 24 H 1.48499 * 109.47302 * 89.99586 * 23 21 19
25 25 H 1.48501 * 109.46880 * 209.99654 * 23 21 19
26 26 H 1.48505 * 109.47318 * 329.99492 * 23 21 19
27 27 H 1.09005 * 109.47552 * 308.37602 * 1 2 3
28 28 H 1.09000 * 109.47362 * 68.37845 * 1 2 3
29 29 H 1.09003 * 109.47261 * 188.37844 * 1 2 3
30 30 H 0.97010 * 119.99744 * 240.00632 * 5 2 1
31 31 H 1.07995 * 120.01152 * 0.26479 * 7 6 5
32 32 H 1.08001 * 119.95269 * 179.97438 * 8 7 6
33 33 H 1.08003 * 119.93612 * 180.02562 * 9 8 7
34 34 H 1.08995 * 109.46683 * 29.98198 * 13 12 10
35 35 H 1.09002 * 109.47112 * 149.97735 * 13 12 10
36 36 H 0.97008 * 119.99654 * 359.97438 * 14 13 12
37 37 H 1.09001 * 109.47001 * 299.99492 * 17 15 14
38 38 H 1.08991 * 109.47228 * 60.00410 * 17 15 14
39 39 H 1.09004 * 109.47369 * 300.00066 * 18 17 15
40 40 H 1.09002 * 109.47289 * 59.99911 * 18 17 15
41 41 H 0.97001 * 119.99914 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9693 -0.9116
5 7 2.2271 -0.5909 1.4908
6 6 1.8160 -1.8696 1.8737
7 6 1.7482 -2.8898 0.9328
8 6 1.3355 -4.1519 1.3121
9 6 0.9899 -4.4023 2.6273
10 6 1.0559 -3.3885 3.5685
11 9 0.7171 -3.6361 4.8527
12 6 1.4677 -2.1219 3.1939
13 6 1.5392 -1.0182 4.2175
14 7 0.2540 -0.3171 4.2703
15 6 0.0835 0.7143 5.1210
16 8 0.9941 1.0623 5.8423
17 6 -1.2385 1.4359 5.1749
18 6 -1.1659 2.5564 6.2142
19 6 -2.4876 3.2784 6.2677
20 1 -3.2985 2.9687 5.6250
21 6 -2.6620 4.3336 7.1378
22 7 -3.8156 4.9633 7.1848
23 14 -1.2597 4.8687 8.2499
24 1 -0.4438 5.8981 7.5572
25 1 -1.8129 5.4377 9.5050
26 1 -0.4077 3.6957 8.5715
27 1 -0.3634 0.6380 0.8057
28 1 -0.3634 0.3787 -0.9553
29 1 -0.3634 -1.0167 0.1497
30 1 2.7549 -0.0490 2.0981
31 1 2.0176 -2.6956 -0.0948
32 1 1.2825 -4.9444 0.5803
33 1 0.6678 -5.3904 2.9212
34 1 1.7613 -1.4440 5.1959
35 1 2.3251 -0.3157 3.9400
36 1 -0.4743 -0.5952 3.6930
37 1 -1.4599 1.8622 4.1964
38 1 -2.0247 0.7336 5.4516
39 1 -0.9442 2.1305 7.1928
40 1 -0.3797 3.2586 5.9370
41 1 -3.9382 5.7059 7.7967
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327618335.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:52
Heat of formation + Delta-G solvation = -157.500406 kcal
Electronic energy + Delta-G solvation = -27938.196044 eV
Core-core repulsion = 23665.574380 eV
Total energy + Delta-G solvation = -4272.621663 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.104 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-49.98953 -41.15201 -40.32759 -38.32886 -37.20148 -36.34173 -35.84837 -35.50053
-33.40736 -32.20800 -30.39173 -30.18288 -28.57938 -26.71600 -23.86434 -23.38324
-22.53131 -21.29857 -20.68742 -19.40775 -19.18095 -18.99259 -17.89103 -17.55198
-17.36795 -17.28235 -16.90470 -16.59765 -16.54742 -16.25184 -16.21143 -16.09339
-14.88126 -14.86665 -14.62423 -14.53644 -14.33962 -14.11186 -14.04793 -13.97026
-13.72520 -13.47679 -13.40265 -13.34110 -13.22380 -12.89346 -12.41027 -12.26960
-12.16121 -12.08869 -11.97305 -11.77167 -11.71877 -11.39881 -10.92817 -10.78056
-10.17547 -9.87259 -9.42796 -8.31574 -6.34034 -0.92378 -0.02304 0.10289
1.32927 1.35248 1.42149 1.49771 1.66022 2.15928 2.34770 2.55984
2.66843 3.04516 3.09890 3.23182 3.39739 3.68548 3.72761 3.95259
4.00231 4.05891 4.14352 4.34349 4.38992 4.45655 4.52028 4.56332
4.83537 4.92512 4.98253 5.00751 5.11633 5.14065 5.29051 5.38863
5.40432 5.44977 5.61414 5.65290 5.89403 6.23328 6.52944 6.72506
7.26177 7.31481 8.83969
Molecular weight = 344.10amu
Principal moments of inertia in cm(-1)
A = 0.012415 B = 0.003066 C = 0.002657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2254.859337 B = 9128.766876 C =10537.604430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.654 4.654
2 S 2.614 3.386
3 O -0.990 6.990
4 O -0.970 6.970
5 N -1.056 6.056
6 C 0.203 3.797
7 C -0.191 4.191
8 C -0.038 4.038
9 C -0.166 4.166
10 C 0.127 3.873
11 F -0.144 7.144
12 C -0.172 4.172
13 C 0.164 3.836
14 N -0.713 5.713
15 C 0.515 3.485
16 O -0.583 6.583
17 C -0.117 4.117
18 C 0.003 3.997
19 C -0.527 4.527
20 H 0.052 0.948
21 C 0.014 3.986
22 N -0.943 5.943
23 Si 0.936 3.064
24 H -0.269 1.269
25 H -0.279 1.279
26 H -0.262 1.262
27 H 0.144 0.856
28 H 0.156 0.844
29 H 0.155 0.845
30 H 0.431 0.569
31 H 0.172 0.828
32 H 0.176 0.824
33 H 0.161 0.839
34 H 0.064 0.936
35 H 0.077 0.923
36 H 0.415 0.585
37 H 0.108 0.892
38 H 0.103 0.897
39 H 0.008 0.992
40 H 0.009 0.991
41 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.261 -23.196 -18.984 31.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.808 4.808
2 S 2.712 3.288
3 O -0.981 6.981
4 O -0.960 6.960
5 N -0.804 5.804
6 C 0.104 3.896
7 C -0.212 4.212
8 C -0.056 4.056
9 C -0.185 4.185
10 C 0.106 3.894
11 F -0.122 7.122
12 C -0.177 4.177
13 C 0.040 3.960
14 N -0.367 5.367
15 C 0.304 3.696
16 O -0.462 6.462
17 C -0.157 4.157
18 C -0.035 4.035
19 C -0.565 4.565
20 H 0.071 0.929
21 C -0.184 4.184
22 N -0.584 5.584
23 Si 0.761 3.239
24 H -0.194 1.194
25 H -0.205 1.205
26 H -0.187 1.187
27 H 0.163 0.837
28 H 0.174 0.826
29 H 0.173 0.827
30 H 0.269 0.731
31 H 0.189 0.811
32 H 0.193 0.807
33 H 0.178 0.822
34 H 0.082 0.918
35 H 0.096 0.904
36 H 0.252 0.748
37 H 0.126 0.874
38 H 0.121 0.879
39 H 0.027 0.973
40 H 0.028 0.972
41 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 11.386 -22.549 -19.160 31.705
hybrid contribution -0.270 0.765 1.587 1.783
sum 11.116 -21.784 -17.572 30.115
Atomic orbital electron populations
1.30350 1.22103 1.14220 1.14129 1.04807 0.79534 0.72485 0.72005
1.93620 1.80125 1.38954 1.85363 1.93519 1.79010 1.61099 1.62412
1.53546 1.65807 1.22566 1.38484 1.17046 0.95699 0.84589 0.92229
1.22203 1.04441 0.92519 1.02019 1.21317 0.92449 0.96578 0.95261
1.21492 1.04257 0.99693 0.93072 1.17625 0.98963 0.93701 0.79091
1.91524 1.89680 1.94726 1.36274 1.19520 1.08952 0.94297 0.94935
1.19869 0.86779 0.91984 0.97360 1.45925 1.15682 1.33156 1.41948
1.21235 0.90243 0.79626 0.78524 1.90656 1.44980 1.67017 1.43556
1.21520 0.93487 0.98135 1.02562 1.19238 0.95041 0.94105 0.95090
1.21427 0.98456 1.14905 1.21725 0.92946 1.25779 0.97751 0.96402
0.98430 1.70016 1.25613 1.23346 1.39394 0.85863 0.80010 0.79156
0.78886 1.19411 1.20467 1.18653 0.83728 0.82577 0.82656 0.73068
0.81117 0.80702 0.82165 0.91781 0.90442 0.74800 0.87423 0.87922
0.97337 0.97226 0.92412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.65 -3.97 10.71 113.37 1.21 -2.75 16
2 S 2.61 35.40 5.87 -56.49 -0.33 35.07 16
3 O -0.99 -22.74 18.08 -127.65 -2.31 -25.05 16
4 O -0.97 -16.54 15.05 -127.65 -1.92 -18.46 16
5 N -1.06 -13.99 5.38 -51.39 -0.28 -14.27 16
6 C 0.20 2.60 6.10 38.21 0.23 2.84 16
7 C -0.19 -1.93 9.25 22.41 0.21 -1.72 16
8 C -0.04 -0.25 10.04 22.24 0.22 -0.02 16
9 C -0.17 -1.53 10.02 22.34 0.22 -1.31 16
10 C 0.13 1.92 7.24 22.36 0.16 2.09 16
11 F -0.14 -2.88 16.47 44.97 0.74 -2.14 16
12 C -0.17 -2.68 5.27 -19.69 -0.10 -2.78 16
13 C 0.16 3.46 5.37 85.63 0.46 3.92 16
14 N -0.71 -16.23 5.55 -466.80 -2.59 -18.82 16
15 C 0.52 17.24 7.83 87.66 0.69 17.92 16
16 O -0.58 -24.85 15.98 -3.02 -0.05 -24.90 16
17 C -0.12 -4.20 5.64 29.85 0.17 -4.04 16
18 C 0.00 0.16 3.33 29.85 0.10 0.26 16
19 C -0.53 -29.95 9.66 25.60 0.25 -29.71 16
20 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16
21 C 0.01 0.83 5.47 84.66 0.46 1.30 16
22 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16
23 Si 0.94 46.70 27.47 68.60 1.88 48.59 16
24 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16
25 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16
26 H -0.26 -13.03 6.54 99.48 0.65 -12.38 16
27 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16
28 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16
29 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16
30 H 0.43 5.84 7.33 -96.73 -0.71 5.13 16
31 H 0.17 1.79 5.18 -2.91 -0.02 1.78 16
32 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16
33 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16
34 H 0.06 1.60 7.64 -2.39 -0.02 1.58 16
35 H 0.08 1.62 6.53 -2.39 -0.02 1.60 16
36 H 0.42 6.69 8.46 -92.70 -0.78 5.91 16
37 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16
38 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16
39 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16
40 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16
41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16
Total: -1.00 -85.24 363.45 -0.72 -85.96
By element:
Atomic # 1 Polarization: 6.85 SS G_CDS: -0.45 Total: 6.40 kcal
Atomic # 6 Polarization: -18.28 SS G_CDS: 4.28 Total: -14.00 kcal
Atomic # 7 Polarization: -88.91 SS G_CDS: -2.57 Total: -91.47 kcal
Atomic # 8 Polarization: -64.13 SS G_CDS: -4.28 Total: -68.41 kcal
Atomic # 9 Polarization: -2.88 SS G_CDS: 0.74 Total: -2.14 kcal
Atomic # 14 Polarization: 46.70 SS G_CDS: 1.88 Total: 48.59 kcal
Atomic # 16 Polarization: 35.40 SS G_CDS: -0.33 Total: 35.07 kcal
Total: -85.24 -0.72 -85.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327618335.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.540 kcal
(2) G-P(sol) polarization free energy of solvation -85.244 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds