Wall clock time and date at job start Sat Apr 11 2020 07:04:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86801 * 119.99774 * 2 1
4 4 H 1.48497 * 109.47327 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46834 * 299.99671 * 3 2 1
6 6 H 1.48493 * 109.47327 * 59.99525 * 3 2 1
7 7 C 1.38800 * 119.99956 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99596 * 180.02562 * 7 2 1
9 9 S 1.76199 * 120.00278 * 0.02562 * 7 2 1
10 10 C 1.81000 * 99.99981 * 179.97438 * 9 7 2
11 11 C 1.50698 * 109.47150 * 180.02562 * 10 9 7
12 12 O 1.21283 * 119.99820 * 0.02562 * 11 10 9
13 13 N 1.34778 * 119.99893 * 180.02562 * 11 10 9
14 14 C 1.47666 * 134.45256 * 180.02562 * 13 11 10
15 15 C 1.53445 * 85.97804 * 155.70047 * 14 13 11
16 16 C 1.47668 * 134.45306 * 359.97438 * 13 11 10
17 17 C 1.52722 * 113.65849 * 137.75782 * 15 14 13
18 18 C 1.53305 * 108.89007 * 185.23136 * 17 15 14
19 19 C 1.53026 * 109.17995 * 304.60592 * 18 17 15
20 20 N 1.46824 * 109.77955 * 60.99194 * 19 18 17
21 21 C 1.46901 * 110.99815 * 172.40390 * 20 19 18
22 22 C 1.50701 * 109.46921 * 66.04789 * 21 20 19
23 23 C 1.31161 * 119.99809 * 124.99473 * 22 21 20
24 24 Cl 1.73595 * 119.99876 * 179.97438 * 23 22 21
25 25 C 1.47014 * 111.16348 * 296.47908 * 20 19 18
26 26 H 0.96995 * 120.00406 * 0.02562 * 1 2 3
27 27 H 1.08999 * 109.47029 * 60.00117 * 10 9 7
28 28 H 1.09001 * 109.47269 * 300.00296 * 10 9 7
29 29 H 1.09005 * 113.79344 * 41.43722 * 14 13 11
30 30 H 1.09002 * 113.79657 * 269.96955 * 14 13 11
31 31 H 1.08996 * 113.79428 * 90.03580 * 16 13 11
32 32 H 1.08996 * 113.79859 * 318.55369 * 16 13 11
33 33 H 1.09004 * 109.56887 * 65.41278 * 17 15 14
34 34 H 1.09002 * 109.67018 * 305.10897 * 17 15 14
35 35 H 1.09001 * 109.51987 * 184.70051 * 18 17 15
36 36 H 1.08994 * 109.56626 * 64.54425 * 18 17 15
37 37 H 1.08993 * 109.42128 * 300.90184 * 19 18 17
38 38 H 1.09001 * 109.41775 * 181.08732 * 19 18 17
39 39 H 1.09002 * 109.47401 * 306.04816 * 21 20 19
40 40 H 1.09001 * 109.46874 * 186.04829 * 21 20 19
41 41 H 1.07995 * 119.99948 * 304.99977 * 22 21 20
42 42 H 1.08005 * 120.00245 * 0.02562 * 23 22 21
43 43 H 1.08994 * 109.50309 * 179.22420 * 25 20 19
44 44 H 1.09004 * 109.50037 * 299.33515 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3465 0.0006
5 1 1.8915 2.3964 -1.2126
6 1 1.8914 2.3965 1.2124
7 6 2.0103 -1.2020 0.0005
8 1 3.0903 -1.2020 0.0010
9 16 1.1294 -2.7280 0.0005
10 6 2.5160 -3.8914 0.0005
11 6 1.9876 -5.3027 -0.0001
12 8 0.7913 -5.5023 -0.0010
13 7 2.8444 -6.3431 0.0003
14 6 2.6882 -7.8114 -0.0005
15 6 4.0875 -7.8517 -0.6290
16 6 4.3155 -6.4712 0.0009
17 6 4.9868 -8.9433 -0.0529
18 6 6.3882 -8.8027 -0.6584
19 6 6.2822 -8.8366 -2.1846
20 7 5.4550 -7.7165 -2.6502
21 6 5.4817 -7.6159 -4.1155
22 6 4.8148 -8.8273 -4.7144
23 6 3.8208 -8.6793 -5.5572
24 17 3.0531 -10.0747 -6.2477
25 6 4.0756 -7.8337 -2.1551
26 1 -0.4850 0.8400 -0.0004
27 1 3.1245 -3.7313 0.8905
28 1 3.1246 -3.7313 -0.8894
29 1 1.8988 -8.1693 -0.6616
30 1 2.6411 -8.2493 0.9966
31 1 4.7532 -6.5099 0.9983
32 1 4.8188 -5.7647 -0.6592
33 1 4.5780 -9.9225 -0.3024
34 1 5.0449 -8.8371 1.0304
35 1 7.0161 -9.6263 -0.3186
36 1 6.8280 -7.8560 -0.3448
37 1 5.8271 -9.7769 -2.4954
38 1 7.2787 -8.7562 -2.6189
39 1 6.5154 -7.5639 -4.4574
40 1 4.9501 -6.7169 -4.4276
41 1 5.1554 -9.8174 -4.4496
42 1 3.4805 -7.6891 -5.8224
43 1 3.4901 -6.9834 -2.5045
44 1 3.6331 -8.7581 -2.5264
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001675649852.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:15
Heat of formation + Delta-G solvation = 11.508530 kcal
Electronic energy + Delta-G solvation = -25468.714800 eV
Core-core repulsion = 21767.591383 eV
Total energy + Delta-G solvation = -3701.123416 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.107 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.07547 -38.76017 -37.39563 -36.82102 -34.52920 -32.41175 -32.01551 -30.98803
-29.10925 -26.90986 -26.31035 -25.90747 -25.32787 -23.35827 -22.09330 -20.45497
-19.21214 -18.54035 -17.66395 -16.82802 -16.52257 -15.81702 -15.54111 -15.42786
-15.26924 -15.15232 -14.78898 -14.35956 -14.18583 -13.84012 -13.54462 -13.27972
-13.05769 -12.86089 -12.67746 -12.57508 -12.41954 -12.32759 -12.00015 -11.89865
-11.68473 -11.38705 -11.17379 -11.05868 -11.00093 -10.93919 -10.76285 -10.68210
-10.54610 -9.78605 -9.52196 -9.27278 -9.05753 -8.70739 -8.49995 -8.20364
-6.48031 -6.19950 -3.90258 1.42527 1.93889 2.82851 3.13028 3.22675
3.26382 3.32086 3.45398 3.61377 4.14679 4.22097 4.32811 4.45486
4.46469 4.65965 4.70260 4.78382 4.83571 4.97576 5.05867 5.15206
5.18602 5.27122 5.35985 5.36174 5.39443 5.47006 5.50321 5.55947
5.57986 5.60052 5.66120 5.71226 5.75689 5.83553 5.93096 5.97041
6.08304 6.12817 6.19876 6.65490 6.69253 7.61804 7.91907 8.37478
8.61984 9.25407 10.87577
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.011376 B = 0.002533 C = 0.002366
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2460.830603 B =11050.747786 C =11830.193807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.271 1.271
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.533 4.533
8 H 0.073 0.927
9 S -0.063 6.063
10 C -0.143 4.143
11 C 0.555 3.445
12 O -0.518 6.518
13 N -0.649 5.649
14 C 0.117 3.883
15 C -0.090 4.090
16 C 0.120 3.880
17 C -0.106 4.106
18 C -0.116 4.116
19 C 0.051 3.949
20 N -0.525 5.525
21 C 0.088 3.912
22 C -0.185 4.185
23 C -0.092 4.092
24 Cl -0.098 7.098
25 C 0.081 3.919
26 H 0.268 0.732
27 H 0.087 0.913
28 H 0.088 0.912
29 H 0.078 0.922
30 H 0.083 0.917
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.065 0.935
34 H 0.072 0.928
35 H 0.068 0.932
36 H 0.075 0.925
37 H 0.035 0.965
38 H 0.075 0.925
39 H 0.093 0.907
40 H 0.087 0.913
41 H 0.120 0.880
42 H 0.149 0.851
43 H 0.083 0.917
44 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.221 -22.543 -6.723 28.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.681 4.681
8 H 0.091 0.909
9 S 0.164 5.836
10 C -0.294 4.294
11 C 0.344 3.656
12 O -0.393 6.393
13 N -0.388 5.388
14 C -0.006 4.006
15 C -0.091 4.091
16 C -0.003 4.003
17 C -0.144 4.144
18 C -0.153 4.153
19 C -0.076 4.076
20 N -0.247 5.247
21 C -0.040 4.040
22 C -0.205 4.205
23 C -0.137 4.137
24 Cl -0.069 7.069
25 C -0.047 4.047
26 H 0.077 0.923
27 H 0.105 0.895
28 H 0.106 0.894
29 H 0.097 0.903
30 H 0.101 0.899
31 H 0.099 0.901
32 H 0.107 0.893
33 H 0.084 0.916
34 H 0.090 0.910
35 H 0.087 0.913
36 H 0.093 0.907
37 H 0.053 0.947
38 H 0.094 0.906
39 H 0.111 0.889
40 H 0.105 0.895
41 H 0.138 0.862
42 H 0.166 0.834
43 H 0.101 0.899
44 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 14.264 -22.203 -6.577 27.197
hybrid contribution 1.533 0.415 -0.340 1.624
sum 15.797 -21.788 -6.917 27.786
Atomic orbital electron populations
1.70030 1.05947 1.27310 1.47034 1.24997 0.95027 0.99023 0.94588
0.86116 0.79607 0.81890 0.77884 1.19593 1.20569 1.20586 1.22897
0.94917 0.91578 1.58708 0.90902 1.85394 1.05108 0.96393 1.96705
1.23454 1.06296 0.94879 1.04747 1.20032 0.85501 0.85261 0.74772
1.90707 1.14953 1.85077 1.48547 1.50058 1.07587 1.05539 1.75613
1.23065 0.96108 0.81091 1.00377 1.22086 0.95688 0.96046 0.95290
1.23115 0.81573 0.95346 1.00254 1.21507 0.94853 0.97798 1.00254
1.21592 0.96770 1.02722 0.94248 1.22126 0.97536 0.91865 0.96107
1.62224 1.11078 1.43288 1.08082 1.21342 1.01315 0.94680 0.86655
1.23978 0.97024 1.02043 0.97496 1.24596 0.97380 0.92402 0.99348
1.98379 1.81390 1.42988 1.84169 1.21782 0.89029 1.01456 0.92385
0.92263 0.89474 0.89394 0.90312 0.89873 0.90090 0.89306 0.91608
0.90963 0.91332 0.90672 0.94676 0.90644 0.88887 0.89454 0.86200
0.83403 0.89854 0.93840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16
2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16
3 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16
4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
7 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16
8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16
9 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16
10 C -0.14 -3.03 5.90 36.00 0.21 -2.82 16
11 C 0.55 11.05 8.07 -10.99 -0.09 10.96 16
12 O -0.52 -12.45 16.59 5.56 0.09 -12.36 16
13 N -0.65 -9.45 3.45 -180.46 -0.62 -10.08 16
14 C 0.12 1.31 7.97 -3.18 -0.03 1.29 16
15 C -0.09 -0.78 0.86 -154.48 -0.13 -0.92 16
16 C 0.12 1.27 7.63 -3.18 -0.02 1.25 16
17 C -0.11 -0.68 5.18 -26.72 -0.14 -0.82 16
18 C -0.12 -0.66 6.04 -26.56 -0.16 -0.82 16
19 C 0.05 0.31 5.04 -3.85 -0.02 0.29 16
20 N -0.52 -3.96 4.87 -236.26 -1.15 -5.11 16
21 C 0.09 0.58 5.83 -4.97 -0.03 0.55 16
22 C -0.18 -1.23 7.33 -36.07 -0.26 -1.49 16
23 C -0.09 -0.68 10.43 28.97 0.30 -0.38 16
24 Cl -0.10 -0.84 29.10 -51.86 -1.51 -2.35 16
25 C 0.08 0.73 4.17 -3.95 -0.02 0.71 16
26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
27 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16
28 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16
29 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16
30 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16
31 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16
32 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16
33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16
35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
36 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16
37 H 0.03 0.21 6.96 -51.93 -0.36 -0.15 16
38 H 0.08 0.40 8.03 -51.93 -0.42 -0.02 16
39 H 0.09 0.50 8.04 -51.93 -0.42 0.09 16
40 H 0.09 0.61 7.80 -51.93 -0.40 0.21 16
41 H 0.12 0.79 7.12 -52.49 -0.37 0.42 16
42 H 0.15 0.98 7.84 -52.48 -0.41 0.57 16
43 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16
44 H 0.04 0.39 7.17 -51.93 -0.37 0.02 16
LS Contribution 386.24 15.07 5.82 5.82
Total: -1.00 -34.49 386.24 -10.98 -45.48
By element:
Atomic # 1 Polarization: 3.86 SS G_CDS: -6.93 Total: -3.06 kcal
Atomic # 6 Polarization: -5.07 SS G_CDS: -0.19 Total: -5.26 kcal
Atomic # 7 Polarization: -39.80 SS G_CDS: -1.04 Total: -40.84 kcal
Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal
Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal
Atomic # 17 Polarization: -0.84 SS G_CDS: -1.51 Total: -2.35 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -34.49 -10.98 -45.48 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001675649852.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.986 kcal
(2) G-P(sol) polarization free energy of solvation -34.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds