Wall clock time and date at job start Sat Apr 11 2020 07:04:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86801 * 119.99774 * 2 1
4 4 H 1.48497 * 109.47327 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46834 * 299.99671 * 3 2 1
6 6 H 1.48493 * 109.47327 * 59.99525 * 3 2 1
7 7 C 1.38800 * 119.99956 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99596 * 180.02562 * 7 2 1
9 9 S 1.76199 * 120.00278 * 0.02562 * 7 2 1
10 10 C 1.81000 * 99.99981 * 179.97438 * 9 7 2
11 11 C 1.50698 * 109.47150 * 180.02562 * 10 9 7
12 12 O 1.21283 * 119.99820 * 0.02562 * 11 10 9
13 13 N 1.34778 * 119.99893 * 180.02562 * 11 10 9
14 14 C 1.47666 * 134.45256 * 180.02562 * 13 11 10
15 15 C 1.53445 * 85.97804 * 155.70047 * 14 13 11
16 16 C 1.47668 * 134.45306 * 359.97438 * 13 11 10
17 17 C 1.52722 * 113.65849 * 137.75782 * 15 14 13
18 18 C 1.53305 * 108.89007 * 185.23136 * 17 15 14
19 19 C 1.53026 * 109.17995 * 304.60592 * 18 17 15
20 20 N 1.46824 * 109.77955 * 60.99194 * 19 18 17
21 21 C 1.46901 * 110.99815 * 172.40390 * 20 19 18
22 22 C 1.50701 * 109.46921 * 66.04789 * 21 20 19
23 23 C 1.31161 * 119.99809 * 124.99473 * 22 21 20
24 24 Cl 1.73595 * 119.99876 * 179.97438 * 23 22 21
25 25 C 1.47014 * 111.16348 * 296.47908 * 20 19 18
26 26 H 0.96995 * 120.00406 * 0.02562 * 1 2 3
27 27 H 1.08999 * 109.47029 * 60.00117 * 10 9 7
28 28 H 1.09001 * 109.47269 * 300.00296 * 10 9 7
29 29 H 1.09005 * 113.79344 * 41.43722 * 14 13 11
30 30 H 1.09002 * 113.79657 * 269.96955 * 14 13 11
31 31 H 1.08996 * 113.79428 * 90.03580 * 16 13 11
32 32 H 1.08996 * 113.79859 * 318.55369 * 16 13 11
33 33 H 1.09004 * 109.56887 * 65.41278 * 17 15 14
34 34 H 1.09002 * 109.67018 * 305.10897 * 17 15 14
35 35 H 1.09001 * 109.51987 * 184.70051 * 18 17 15
36 36 H 1.08994 * 109.56626 * 64.54425 * 18 17 15
37 37 H 1.08993 * 109.42128 * 300.90184 * 19 18 17
38 38 H 1.09001 * 109.41775 * 181.08732 * 19 18 17
39 39 H 1.09002 * 109.47401 * 306.04816 * 21 20 19
40 40 H 1.09001 * 109.46874 * 186.04829 * 21 20 19
41 41 H 1.07995 * 119.99948 * 304.99977 * 22 21 20
42 42 H 1.08005 * 120.00245 * 0.02562 * 23 22 21
43 43 H 1.08994 * 109.50309 * 179.22420 * 25 20 19
44 44 H 1.09004 * 109.50037 * 299.33515 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3465 0.0006
5 1 1.8915 2.3964 -1.2126
6 1 1.8914 2.3965 1.2124
7 6 2.0103 -1.2020 0.0005
8 1 3.0903 -1.2020 0.0010
9 16 1.1294 -2.7280 0.0005
10 6 2.5160 -3.8914 0.0005
11 6 1.9876 -5.3027 -0.0001
12 8 0.7913 -5.5023 -0.0010
13 7 2.8444 -6.3431 0.0003
14 6 2.6882 -7.8114 -0.0005
15 6 4.0875 -7.8517 -0.6290
16 6 4.3155 -6.4712 0.0009
17 6 4.9868 -8.9433 -0.0529
18 6 6.3882 -8.8027 -0.6584
19 6 6.2822 -8.8366 -2.1846
20 7 5.4550 -7.7165 -2.6502
21 6 5.4817 -7.6159 -4.1155
22 6 4.8148 -8.8273 -4.7144
23 6 3.8208 -8.6793 -5.5572
24 17 3.0531 -10.0747 -6.2477
25 6 4.0756 -7.8337 -2.1551
26 1 -0.4850 0.8400 -0.0004
27 1 3.1245 -3.7313 0.8905
28 1 3.1246 -3.7313 -0.8894
29 1 1.8988 -8.1693 -0.6616
30 1 2.6411 -8.2493 0.9966
31 1 4.7532 -6.5099 0.9983
32 1 4.8188 -5.7647 -0.6592
33 1 4.5780 -9.9225 -0.3024
34 1 5.0449 -8.8371 1.0304
35 1 7.0161 -9.6263 -0.3186
36 1 6.8280 -7.8560 -0.3448
37 1 5.8271 -9.7769 -2.4954
38 1 7.2787 -8.7562 -2.6189
39 1 6.5154 -7.5639 -4.4574
40 1 4.9501 -6.7169 -4.4276
41 1 5.1554 -9.8174 -4.4496
42 1 3.4805 -7.6891 -5.8224
43 1 3.4901 -6.9834 -2.5045
44 1 3.6331 -8.7581 -2.5264
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001675649852.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:14
Heat of formation + Delta-G solvation = -10.959031 kcal
Electronic energy + Delta-G solvation = -25469.689066 eV
Core-core repulsion = 21767.591383 eV
Total energy + Delta-G solvation = -3702.097683 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.107 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.98685 -39.87291 -38.41945 -37.52958 -35.17481 -34.59704 -32.68211 -32.11197
-30.38883 -27.79022 -27.52208 -27.23210 -26.67834 -23.93800 -22.74747 -21.15870
-20.48717 -19.59551 -19.23398 -17.95791 -17.45051 -16.91428 -16.87673 -16.81409
-16.23212 -15.89431 -15.82854 -15.72256 -15.47192 -14.93018 -14.62696 -14.34594
-13.92691 -13.83579 -13.69176 -13.46107 -13.29694 -13.28485 -13.17796 -12.99129
-12.91647 -12.70148 -12.59705 -12.43407 -11.99986 -11.81828 -11.73232 -11.57569
-11.36210 -11.25440 -11.16671 -10.73407 -10.29957 -10.11274 -9.71738 -9.29511
-8.69532 -8.35583 -6.14604 0.85848 1.21880 1.33608 1.41300 1.43240
1.55790 1.58967 2.00876 2.26448 2.81612 2.98478 3.22180 3.40959
3.59995 3.69404 3.88402 3.92380 4.05508 4.12590 4.22980 4.29206
4.30473 4.43418 4.43835 4.50292 4.56405 4.61025 4.69771 4.72489
4.78652 4.82872 4.87966 4.95300 5.02963 5.10501 5.19027 5.21805
5.28745 5.39983 5.40779 5.52446 6.04686 6.15236 6.19153 6.61755
7.05376 7.12465 8.74087
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.011376 B = 0.002533 C = 0.002366
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2460.830603 B =11050.747786 C =11830.193807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.013 3.987
3 Si 1.001 2.999
4 H -0.256 1.256
5 H -0.273 1.273
6 H -0.273 1.273
7 C -0.544 4.544
8 H 0.081 0.919
9 S -0.152 6.152
10 C -0.116 4.116
11 C 0.551 3.449
12 O -0.573 6.573
13 N -0.646 5.646
14 C 0.110 3.890
15 C -0.070 4.070
16 C 0.118 3.882
17 C -0.100 4.100
18 C -0.112 4.112
19 C 0.049 3.951
20 N -0.530 5.530
21 C 0.089 3.911
22 C -0.170 4.170
23 C -0.105 4.105
24 Cl -0.110 7.110
25 C 0.085 3.915
26 H 0.271 0.729
27 H 0.102 0.898
28 H 0.101 0.899
29 H 0.068 0.932
30 H 0.105 0.895
31 H 0.106 0.894
32 H 0.087 0.913
33 H 0.074 0.926
34 H 0.084 0.916
35 H 0.087 0.913
36 H 0.071 0.929
37 H 0.038 0.962
38 H 0.088 0.912
39 H 0.110 0.890
40 H 0.079 0.921
41 H 0.125 0.875
42 H 0.151 0.849
43 H 0.054 0.946
44 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.766 -23.413 -6.267 31.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.192 4.192
3 Si 0.822 3.178
4 H -0.180 1.180
5 H -0.198 1.198
6 H -0.198 1.198
7 C -0.692 4.692
8 H 0.100 0.900
9 S 0.075 5.925
10 C -0.267 4.267
11 C 0.340 3.660
12 O -0.453 6.453
13 N -0.382 5.382
14 C -0.012 4.012
15 C -0.071 4.071
16 C -0.004 4.004
17 C -0.138 4.138
18 C -0.150 4.150
19 C -0.078 4.078
20 N -0.252 5.252
21 C -0.039 4.039
22 C -0.191 4.191
23 C -0.151 4.151
24 Cl -0.082 7.082
25 C -0.043 4.043
26 H 0.080 0.920
27 H 0.121 0.879
28 H 0.119 0.881
29 H 0.086 0.914
30 H 0.123 0.877
31 H 0.124 0.876
32 H 0.105 0.895
33 H 0.093 0.907
34 H 0.103 0.897
35 H 0.106 0.894
36 H 0.090 0.910
37 H 0.056 0.944
38 H 0.106 0.894
39 H 0.128 0.872
40 H 0.097 0.903
41 H 0.143 0.857
42 H 0.169 0.831
43 H 0.073 0.927
44 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 17.876 -23.127 -6.123 29.865
hybrid contribution 0.522 0.535 -0.494 0.896
sum 18.398 -22.592 -6.617 29.878
Atomic orbital electron populations
1.70192 1.08005 1.28597 1.48010 1.26159 0.95998 1.03368 0.93670
0.84879 0.78606 0.76145 0.78147 1.17969 1.19816 1.19842 1.23202
0.95251 0.91829 1.58899 0.90042 1.85575 1.10552 0.99307 1.97017
1.23235 1.03275 0.94197 1.05993 1.19759 0.85293 0.85852 0.75063
1.90677 1.17179 1.85785 1.51621 1.50114 1.09163 1.06025 1.72892
1.23419 0.97527 0.78498 1.01751 1.21937 0.94313 0.95979 0.94920
1.23472 0.78767 0.96258 1.01858 1.21510 0.94600 0.96856 1.00877
1.21598 0.96343 1.03350 0.93716 1.22227 0.97737 0.91250 0.96600
1.62236 1.10095 1.44312 1.08544 1.21379 1.02142 0.94187 0.86224
1.24003 0.96247 1.02302 0.96569 1.24701 0.98010 0.92121 1.00222
1.98374 1.81715 1.43639 1.84467 1.21638 0.89815 1.00175 0.92626
0.91951 0.87937 0.88065 0.91356 0.87734 0.87615 0.89468 0.90710
0.89722 0.89439 0.91019 0.94397 0.89408 0.87183 0.90302 0.85678
0.83132 0.92723 0.93859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16
2 C 0.01 0.73 5.49 84.86 0.47 1.20 16
3 Si 1.00 44.03 29.55 68.60 2.03 46.06 16
4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16
5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
7 C -0.54 -31.72 9.50 67.95 0.65 -31.07 16
8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16
9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.90 16
10 C -0.12 -4.95 5.90 71.24 0.42 -4.53 16
11 C 0.55 22.33 8.07 87.66 0.71 23.04 16
12 O -0.57 -28.74 16.59 -3.04 -0.05 -28.79 16
13 N -0.65 -18.29 3.45 -843.24 -2.91 -21.20 16
14 C 0.11 2.32 7.97 86.30 0.69 3.01 16
15 C -0.07 -1.06 0.86 -52.07 -0.04 -1.11 16
16 C 0.12 2.21 7.63 86.30 0.66 2.87 16
17 C -0.10 -0.90 5.18 30.60 0.16 -0.75 16
18 C -0.11 -0.84 6.04 30.71 0.19 -0.65 16
19 C 0.05 0.43 5.04 86.33 0.44 0.87 16
20 N -0.53 -6.83 4.87 -901.39 -4.39 -11.22 16
21 C 0.09 1.01 5.83 85.56 0.50 1.51 16
22 C -0.17 -2.03 7.33 25.49 0.19 -1.84 16
23 C -0.11 -1.51 10.43 67.62 0.71 -0.81 16
24 Cl -0.11 -1.86 29.10 -2.72 -0.08 -1.94 16
25 C 0.09 1.42 4.17 86.16 0.36 1.78 16
26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
27 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16
28 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16
29 H 0.07 1.60 8.09 -2.38 -0.02 1.58 16
30 H 0.10 1.80 8.09 -2.39 -0.02 1.78 16
31 H 0.11 1.55 8.02 -2.39 -0.02 1.54 16
32 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16
33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
34 H 0.08 0.62 8.05 -2.39 -0.02 0.60 16
35 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16
36 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16
37 H 0.04 0.33 6.96 -2.39 -0.02 0.32 16
38 H 0.09 0.60 8.03 -2.39 -0.02 0.58 16
39 H 0.11 0.92 8.04 -2.39 -0.02 0.90 16
40 H 0.08 1.05 7.80 -2.39 -0.02 1.03 16
41 H 0.13 1.39 7.12 -2.91 -0.02 1.37 16
42 H 0.15 2.02 7.84 -2.91 -0.02 2.00 16
43 H 0.05 1.23 8.01 -2.39 -0.02 1.21 16
44 H 0.04 0.72 7.17 -2.38 -0.02 0.71 16
Total: -1.00 -78.22 386.24 0.77 -77.45
By element:
Atomic # 1 Polarization: 11.50 SS G_CDS: 0.98 Total: 12.48 kcal
Atomic # 6 Polarization: -12.56 SS G_CDS: 6.07 Total: -6.49 kcal
Atomic # 7 Polarization: -81.85 SS G_CDS: -7.01 Total: -88.87 kcal
Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal
Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal
Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.90 kcal
Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal
Total: -78.22 0.77 -77.45 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001675649852.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.490 kcal
(2) G-P(sol) polarization free energy of solvation -78.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.732 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds