Wall clock time and date at job start Sat Apr 11 2020 07:03:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38124 * 120.03609 * 2 1
4 4 C 1.38274 * 120.07484 * 180.27389 * 3 2 1
5 5 C 1.38321 * 120.15128 * 359.74847 * 4 3 2
6 6 C 1.50698 * 119.95909 * 179.97438 * 5 4 3
7 7 F 1.39897 * 109.47010 * 269.97380 * 6 5 4
8 8 F 1.39898 * 109.47144 * 29.98079 * 6 5 4
9 9 F 1.39911 * 109.46712 * 149.97698 * 6 5 4
10 10 C 1.38074 * 120.07634 * 359.97438 * 5 4 3
11 11 C 1.38908 * 120.03932 * 179.74774 * 2 1 3
12 12 N 1.39725 * 120.07563 * 0.02562 * 11 2 1
13 13 C 1.34777 * 119.99860 * 154.87482 * 12 11 2
14 14 O 1.21378 * 120.00178 * 354.47778 * 13 12 11
15 15 C 1.49355 * 120.00004 * 174.75411 * 13 12 11
16 16 O 1.21358 * 119.99773 * 359.72356 * 15 13 12
17 17 N 1.34769 * 120.00044 * 179.72508 * 15 13 12
18 18 C 1.46498 * 120.00267 * 179.97438 * 17 15 13
19 19 H 1.09005 * 109.47075 * 35.00001 * 18 17 15
20 20 C 1.53004 * 109.47259 * 275.00085 * 18 17 15
21 21 C 1.50703 * 109.47643 * 154.99665 * 18 17 15
22 22 H 1.08000 * 119.99690 * 0.02562 * 21 18 17
23 23 C 1.37875 * 120.00100 * 180.02562 * 21 18 17
24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 18
25 25 Si 1.86796 * 119.99754 * 180.02562 * 23 21 18
26 26 H 1.48507 * 109.47400 * 359.97438 * 25 23 21
27 27 H 1.48504 * 109.47310 * 119.99855 * 25 23 21
28 28 H 1.48506 * 109.47131 * 239.99635 * 25 23 21
29 29 H 1.09009 * 109.47237 * 270.25211 * 1 2 3
30 30 H 1.08995 * 109.47541 * 30.25491 * 1 2 3
31 31 H 1.09001 * 109.46926 * 150.25439 * 1 2 3
32 32 H 1.07991 * 119.96436 * 0.02562 * 3 2 1
33 33 H 1.07994 * 119.92876 * 179.72313 * 4 3 2
34 34 H 1.07995 * 120.03868 * 180.02562 * 10 5 4
35 35 H 0.96991 * 119.99809 * 334.86838 * 12 11 2
36 36 H 0.97005 * 120.00000 * 359.97438 * 17 15 13
37 37 H 1.09004 * 109.46783 * 179.97438 * 20 18 17
38 38 H 1.08991 * 109.46862 * 299.99857 * 20 18 17
39 39 H 1.09001 * 109.46975 * 59.99356 * 20 18 17
40 40 H 0.97001 * 119.99811 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1983 1.1958 0.0000
4 6 3.5810 1.1967 -0.0057
5 6 4.2766 0.0011 -0.0062
6 6 5.7836 0.0072 -0.0130
7 9 6.2439 0.0055 -1.3341
8 9 6.2483 1.1530 0.6414
9 9 6.2575 -1.1316 0.6474
10 6 3.5919 -1.1978 -0.0004
11 6 2.2023 -1.2025 0.0053
12 7 1.5061 -2.4139 0.0101
13 6 2.0868 -3.5268 -0.4806
14 8 3.1733 -3.4582 -1.0174
15 6 1.3906 -4.8435 -0.3695
16 8 0.3043 -4.9120 0.1672
17 7 1.9688 -5.9554 -0.8651
18 6 1.2862 -7.2470 -0.7556
19 1 0.2107 -7.0991 -0.8538
20 6 1.5928 -7.8720 0.6068
21 6 1.7688 -8.1646 -1.8493
22 1 2.5102 -7.8203 -2.5552
23 6 1.2638 -9.4437 -1.9489
24 7 0.3614 -9.8632 -1.0891
25 14 1.8626 -10.5813 -3.3041
26 1 2.8720 -9.8750 -4.1334
27 1 2.4765 -11.7910 -2.6998
28 1 0.7148 -10.9822 -4.1570
29 1 -0.3634 0.0045 1.0277
30 1 -0.3634 0.8876 -0.5178
31 1 -0.3633 -0.8923 -0.5099
32 1 1.6584 2.1310 0.0004
33 1 4.1192 2.1330 -0.0102
34 1 4.1355 -2.1309 -0.0004
35 1 0.6050 -2.4540 0.3666
36 1 2.8369 -5.9005 -1.2944
37 1 1.0845 -8.8329 0.6884
38 1 2.6682 -8.0200 0.7049
39 1 1.2437 -7.2083 1.3979
40 1 0.0065 -10.7632 -1.1589
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122844603.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:53
Heat of formation + Delta-G solvation = -195.299604 kcal
Electronic energy + Delta-G solvation = -29696.497902 eV
Core-core repulsion = 24868.396755 eV
Total energy + Delta-G solvation = -4828.101146 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-50.30134 -47.82732 -47.74708 -41.19837 -39.51752 -38.09027 -35.67253 -34.88263
-33.40758 -32.47760 -30.38729 -29.22490 -28.68665 -25.47748 -25.25776 -24.76569
-23.08136 -21.56365 -20.91607 -19.78369 -19.18000 -18.62955 -18.54842 -18.26451
-16.88452 -16.43244 -15.98942 -15.85523 -15.55707 -15.40857 -14.99779 -14.65998
-14.52329 -14.32385 -14.26532 -14.19628 -14.12601 -13.91445 -13.86418 -13.49815
-13.32211 -12.95514 -12.76316 -12.56152 -12.52921 -12.00742 -11.86907 -11.71207
-11.29451 -11.16060 -11.05912 -10.91982 -10.80518 -10.40070 -10.32026 -9.37270
-9.21361 -9.15387 -8.68686 -8.46313 -8.21835 -6.22430 -4.32202 0.53335
0.84887 1.70695 2.38715 2.53811 3.10581 3.20155 3.28440 3.32143
3.50828 3.57012 3.80643 3.98172 4.26211 4.28759 4.40526 4.45661
4.68144 4.89551 4.92915 5.02765 5.11018 5.21912 5.23644 5.43745
5.60976 5.72136 5.89978 5.94028 5.99292 6.49593 6.65356 6.77028
6.88740 6.95837 7.11906 7.29772 7.55865 7.65686 7.76578 7.99052
8.33329 8.51871 8.77786 9.35244 10.83657
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.015230 B = 0.002587 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1838.029787 B =10821.048275 C =11995.456513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.083 4.083
3 C -0.100 4.100
4 C -0.089 4.089
5 C -0.169 4.169
6 C 0.511 3.489
7 F -0.175 7.175
8 F -0.179 7.179
9 F -0.174 7.174
10 C -0.082 4.082
11 C 0.152 3.848
12 N -0.647 5.647
13 C 0.507 3.493
14 O -0.499 6.499
15 C 0.495 3.505
16 O -0.534 6.534
17 N -0.665 5.665
18 C 0.261 3.739
19 H 0.055 0.945
20 C -0.149 4.149
21 C -0.538 4.538
22 H 0.065 0.935
23 C 0.068 3.932
24 N -0.883 5.883
25 Si 0.905 3.095
26 H -0.271 1.271
27 H -0.282 1.282
28 H -0.282 1.282
29 H 0.080 0.920
30 H 0.078 0.922
31 H 0.072 0.928
32 H 0.139 0.861
33 H 0.136 0.864
34 H 0.160 0.840
35 H 0.426 0.574
36 H 0.403 0.597
37 H 0.095 0.905
38 H 0.031 0.969
39 H 0.016 0.984
40 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.947 23.031 3.795 23.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.085 4.085
3 C -0.119 4.119
4 C -0.108 4.108
5 C -0.171 4.171
6 C 0.457 3.543
7 F -0.156 7.156
8 F -0.160 7.160
9 F -0.156 7.156
10 C -0.102 4.102
11 C 0.056 3.944
12 N -0.293 5.293
13 C 0.290 3.710
14 O -0.372 6.372
15 C 0.273 3.727
16 O -0.412 6.412
17 N -0.314 5.314
18 C 0.161 3.839
19 H 0.073 0.927
20 C -0.208 4.208
21 C -0.576 4.576
22 H 0.084 0.916
23 C -0.136 4.136
24 N -0.520 5.520
25 Si 0.732 3.268
26 H -0.196 1.196
27 H -0.208 1.208
28 H -0.208 1.208
29 H 0.099 0.901
30 H 0.097 0.903
31 H 0.091 0.909
32 H 0.157 0.843
33 H 0.154 0.846
34 H 0.178 0.822
35 H 0.265 0.735
36 H 0.238 0.762
37 H 0.114 0.886
38 H 0.050 0.950
39 H 0.036 0.964
40 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 3.854 22.691 3.826 23.332
hybrid contribution 0.600 -0.629 -0.723 1.131
sum 4.454 22.061 3.103 22.719
Atomic orbital electron populations
1.20866 0.89970 1.03938 1.03246 1.19909 0.96825 0.91465 1.00332
1.20804 0.93190 0.97396 1.00492 1.20880 0.94636 0.96782 0.98485
1.19775 0.90812 0.95849 1.10627 1.18224 0.88655 0.73560 0.73908
1.93235 1.90501 1.96126 1.35764 1.93176 1.90481 1.50931 1.81434
1.93217 1.90108 1.51222 1.81011 1.21190 0.93068 0.98785 0.97130
1.17454 0.90827 0.85115 1.00964 1.43271 1.19792 1.06050 1.60187
1.21118 0.86056 0.86078 0.77720 1.90714 1.20475 1.86156 1.39857
1.19562 0.86378 0.84664 0.82061 1.90738 1.20404 1.86069 1.44029
1.46534 1.22765 1.08053 1.54006 1.19016 0.94035 0.76368 0.94504
0.92709 1.22106 0.99774 1.02797 0.96079 1.21227 1.25328 0.97798
1.13231 0.91636 1.24875 0.94606 0.97747 0.96336 1.69897 1.28150
1.18482 1.35477 0.86334 0.78707 0.80375 0.81385 1.19574 1.20755
1.20793 0.90124 0.90333 0.90935 0.84322 0.84612 0.82222 0.73458
0.76226 0.88644 0.95022 0.96447 0.92452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.82 9.45 36.00 0.34 -0.48 16
2 C -0.08 -0.75 5.90 -104.42 -0.62 -1.37 16
3 C -0.10 -0.78 9.70 -39.61 -0.38 -1.16 16
4 C -0.09 -0.78 9.40 -39.54 -0.37 -1.15 16
5 C -0.17 -1.90 5.45 -104.65 -0.57 -2.47 16
6 C 0.51 5.90 3.36 36.00 0.12 6.02 16
7 F -0.17 -2.16 17.30 2.25 0.04 -2.12 16
8 F -0.18 -1.88 16.46 2.25 0.04 -1.85 16
9 F -0.17 -2.22 16.46 2.25 0.04 -2.18 16
10 C -0.08 -1.05 8.07 -39.38 -0.32 -1.37 16
11 C 0.15 1.81 6.41 -83.75 -0.54 1.27 16
12 N -0.65 -8.27 4.95 -10.29 -0.05 -8.33 16
13 C 0.51 8.12 7.69 -11.63 -0.09 8.04 16
14 O -0.50 -8.62 13.64 5.47 0.07 -8.54 16
15 C 0.50 9.43 7.85 -11.63 -0.09 9.34 16
16 O -0.53 -11.15 16.15 5.49 0.09 -11.06 16
17 N -0.66 -13.73 5.06 -55.39 -0.28 -14.01 16
18 C 0.26 6.39 2.56 -69.08 -0.18 6.21 16
19 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16
20 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16
21 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16
22 H 0.07 1.65 7.74 -52.49 -0.41 1.24 16
23 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16
24 N -0.88 -24.02 11.32 55.43 0.63 -23.39 16
25 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16
26 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16
27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
29 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16
30 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16
31 H 0.07 0.53 6.99 -51.93 -0.36 0.17 16
32 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16
33 H 0.14 0.91 7.60 -52.49 -0.40 0.51 16
34 H 0.16 2.35 5.33 -52.49 -0.28 2.07 16
35 H 0.43 4.75 6.89 -40.82 -0.28 4.47 16
36 H 0.40 7.77 8.01 -40.82 -0.33 7.44 16
37 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16
38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16
39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16
LS Contribution 356.40 15.07 5.37 5.37
Total: -1.00 -29.14 356.40 -5.83 -34.97
By element:
Atomic # 1 Polarization: 12.74 SS G_CDS: -4.01 Total: 8.73 kcal
Atomic # 6 Polarization: 9.89 SS G_CDS: -2.74 Total: 7.15 kcal
Atomic # 7 Polarization: -46.03 SS G_CDS: 0.30 Total: -45.73 kcal
Atomic # 8 Polarization: -19.77 SS G_CDS: 0.16 Total: -19.61 kcal
Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.15 kcal
Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -29.14 -5.83 -34.97 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122844603.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -160.329 kcal
(2) G-P(sol) polarization free energy of solvation -29.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) -195.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds