Wall clock time and date at job start Sat Apr 11 2020 07:03:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38124 * 120.03609 * 2 1
4 4 C 1.38274 * 120.07484 * 180.27389 * 3 2 1
5 5 C 1.38321 * 120.15128 * 359.74847 * 4 3 2
6 6 C 1.50698 * 119.95909 * 179.97438 * 5 4 3
7 7 F 1.39897 * 109.47010 * 269.97380 * 6 5 4
8 8 F 1.39898 * 109.47144 * 29.98079 * 6 5 4
9 9 F 1.39911 * 109.46712 * 149.97698 * 6 5 4
10 10 C 1.38074 * 120.07634 * 359.97438 * 5 4 3
11 11 C 1.38908 * 120.03932 * 179.74774 * 2 1 3
12 12 N 1.39725 * 120.07563 * 0.02562 * 11 2 1
13 13 C 1.34777 * 119.99860 * 154.87482 * 12 11 2
14 14 O 1.21378 * 120.00178 * 354.47778 * 13 12 11
15 15 C 1.49355 * 120.00004 * 174.75411 * 13 12 11
16 16 O 1.21358 * 119.99773 * 359.72356 * 15 13 12
17 17 N 1.34769 * 120.00044 * 179.72508 * 15 13 12
18 18 C 1.46498 * 120.00267 * 179.97438 * 17 15 13
19 19 H 1.09005 * 109.47075 * 35.00001 * 18 17 15
20 20 C 1.53004 * 109.47259 * 275.00085 * 18 17 15
21 21 C 1.50703 * 109.47643 * 154.99665 * 18 17 15
22 22 H 1.08000 * 119.99690 * 0.02562 * 21 18 17
23 23 C 1.37875 * 120.00100 * 180.02562 * 21 18 17
24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 18
25 25 Si 1.86796 * 119.99754 * 180.02562 * 23 21 18
26 26 H 1.48507 * 109.47400 * 359.97438 * 25 23 21
27 27 H 1.48504 * 109.47310 * 119.99855 * 25 23 21
28 28 H 1.48506 * 109.47131 * 239.99635 * 25 23 21
29 29 H 1.09009 * 109.47237 * 270.25211 * 1 2 3
30 30 H 1.08995 * 109.47541 * 30.25491 * 1 2 3
31 31 H 1.09001 * 109.46926 * 150.25439 * 1 2 3
32 32 H 1.07991 * 119.96436 * 0.02562 * 3 2 1
33 33 H 1.07994 * 119.92876 * 179.72313 * 4 3 2
34 34 H 1.07995 * 120.03868 * 180.02562 * 10 5 4
35 35 H 0.96991 * 119.99809 * 334.86838 * 12 11 2
36 36 H 0.97005 * 120.00000 * 359.97438 * 17 15 13
37 37 H 1.09004 * 109.46783 * 179.97438 * 20 18 17
38 38 H 1.08991 * 109.46862 * 299.99857 * 20 18 17
39 39 H 1.09001 * 109.46975 * 59.99356 * 20 18 17
40 40 H 0.97001 * 119.99811 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1983 1.1958 0.0000
4 6 3.5810 1.1967 -0.0057
5 6 4.2766 0.0011 -0.0062
6 6 5.7836 0.0072 -0.0130
7 9 6.2439 0.0055 -1.3341
8 9 6.2483 1.1530 0.6414
9 9 6.2575 -1.1316 0.6474
10 6 3.5919 -1.1978 -0.0004
11 6 2.2023 -1.2025 0.0053
12 7 1.5061 -2.4139 0.0101
13 6 2.0868 -3.5268 -0.4806
14 8 3.1733 -3.4582 -1.0174
15 6 1.3906 -4.8435 -0.3695
16 8 0.3043 -4.9120 0.1672
17 7 1.9688 -5.9554 -0.8651
18 6 1.2862 -7.2470 -0.7556
19 1 0.2107 -7.0991 -0.8538
20 6 1.5928 -7.8720 0.6068
21 6 1.7688 -8.1646 -1.8493
22 1 2.5102 -7.8203 -2.5552
23 6 1.2638 -9.4437 -1.9489
24 7 0.3614 -9.8632 -1.0891
25 14 1.8626 -10.5813 -3.3041
26 1 2.8720 -9.8750 -4.1334
27 1 2.4765 -11.7910 -2.6998
28 1 0.7148 -10.9822 -4.1570
29 1 -0.3634 0.0045 1.0277
30 1 -0.3634 0.8876 -0.5178
31 1 -0.3633 -0.8923 -0.5099
32 1 1.6584 2.1310 0.0004
33 1 4.1192 2.1330 -0.0102
34 1 4.1355 -2.1309 -0.0004
35 1 0.6050 -2.4540 0.3666
36 1 2.8369 -5.9005 -1.2944
37 1 1.0845 -8.8329 0.6884
38 1 2.6682 -8.0200 0.7049
39 1 1.2437 -7.2083 1.3979
40 1 0.0065 -10.7632 -1.1589
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000122844603.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:53
Heat of formation + Delta-G solvation = -213.297110 kcal
Electronic energy + Delta-G solvation = -29697.278332 eV
Core-core repulsion = 24868.396755 eV
Total energy + Delta-G solvation = -4828.881577 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.113 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-51.22099 -48.73824 -48.68951 -42.34309 -40.71520 -39.42809 -37.13716 -36.27483
-34.44097 -34.10198 -31.40338 -30.94342 -29.42738 -27.40476 -26.59215 -25.62323
-24.16459 -22.66324 -22.22643 -21.32963 -20.38230 -19.59119 -19.54937 -19.36482
-18.18876 -18.01915 -17.18411 -17.09427 -16.97971 -16.55985 -16.27596 -15.81342
-15.58794 -15.47572 -15.28816 -15.13644 -15.03057 -14.94511 -14.85202 -14.72995
-14.57925 -14.45546 -13.80696 -13.73146 -13.41113 -13.24257 -13.09367 -12.93726
-12.89114 -12.75173 -12.49305 -12.39330 -12.31847 -12.13616 -11.84959 -11.16992
-10.73413 -10.63234 -10.04608 -10.02654 -9.35934 -8.22331 -6.39442 -0.31877
-0.05119 0.50018 1.18054 1.43461 1.45865 1.57286 1.60225 2.01162
2.36706 2.41836 2.57058 2.70806 2.99885 3.08837 3.36040 3.39631
3.70148 3.78750 3.98878 4.13823 4.21996 4.57220 4.64479 4.67880
4.79276 4.86227 4.91509 4.99187 5.07558 5.11509 5.20190 5.26570
5.27049 5.40477 5.57382 5.69899 5.73068 5.89516 6.01428 6.42417
6.61548 6.69636 7.01158 7.32801 8.84018
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.015230 B = 0.002587 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1838.029787 B =10821.048275 C =11995.456513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.071 4.071
3 C -0.090 4.090
4 C -0.078 4.078
5 C -0.183 4.183
6 C 0.511 3.489
7 F -0.182 7.182
8 F -0.171 7.171
9 F -0.186 7.186
10 C -0.102 4.102
11 C 0.124 3.876
12 N -0.629 5.629
13 C 0.516 3.484
14 O -0.515 6.515
15 C 0.497 3.503
16 O -0.553 6.553
17 N -0.669 5.669
18 C 0.269 3.731
19 H 0.018 0.982
20 C -0.137 4.137
21 C -0.553 4.553
22 H 0.070 0.930
23 C 0.021 3.979
24 N -0.912 5.912
25 Si 0.971 3.029
26 H -0.265 1.265
27 H -0.277 1.277
28 H -0.280 1.280
29 H 0.097 0.903
30 H 0.103 0.897
31 H 0.062 0.938
32 H 0.181 0.819
33 H 0.162 0.838
34 H 0.134 0.866
35 H 0.433 0.567
36 H 0.410 0.590
37 H 0.074 0.926
38 H 0.039 0.961
39 H 0.021 0.979
40 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.786 25.653 3.443 26.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.073 4.073
3 C -0.108 4.108
4 C -0.097 4.097
5 C -0.185 4.185
6 C 0.457 3.543
7 F -0.163 7.163
8 F -0.153 7.153
9 F -0.167 7.167
10 C -0.122 4.122
11 C 0.029 3.971
12 N -0.276 5.276
13 C 0.298 3.702
14 O -0.390 6.390
15 C 0.276 3.724
16 O -0.433 6.433
17 N -0.319 5.319
18 C 0.166 3.834
19 H 0.036 0.964
20 C -0.196 4.196
21 C -0.591 4.591
22 H 0.088 0.912
23 C -0.180 4.180
24 N -0.549 5.549
25 Si 0.796 3.204
26 H -0.189 1.189
27 H -0.203 1.203
28 H -0.206 1.206
29 H 0.115 0.885
30 H 0.121 0.879
31 H 0.081 0.919
32 H 0.199 0.801
33 H 0.180 0.820
34 H 0.151 0.849
35 H 0.274 0.726
36 H 0.246 0.754
37 H 0.093 0.907
38 H 0.058 0.942
39 H 0.040 0.960
40 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 3.695 25.368 3.490 25.872
hybrid contribution 0.617 -1.275 -0.558 1.522
sum 4.312 24.094 2.932 24.652
Atomic orbital electron populations
1.20985 0.87999 1.04690 1.04506 1.20268 0.98225 0.90661 0.98181
1.21295 0.92772 0.98387 0.98307 1.21287 0.95399 0.96683 0.96306
1.19809 0.90379 0.96328 1.11936 1.18321 0.89092 0.73385 0.73544
1.93217 1.90662 1.96154 1.36303 1.93184 1.90474 1.50369 1.81236
1.93191 1.90313 1.52015 1.81223 1.21038 0.93722 0.98542 0.98937
1.17639 0.90636 0.85357 1.03438 1.43052 1.19861 1.05648 1.59008
1.20328 0.85679 0.85662 0.78522 1.90726 1.20941 1.86210 1.41080
1.20023 0.86011 0.85526 0.80811 1.90716 1.21333 1.86690 1.44566
1.46285 1.23031 1.07606 1.54948 1.18638 0.92214 0.77906 0.94597
0.96404 1.21937 0.99903 1.01712 0.96029 1.21521 1.25503 0.98372
1.13742 0.91235 1.25701 0.94636 0.99195 0.98433 1.70015 1.29059
1.18947 1.36927 0.85311 0.78214 0.78321 0.78598 1.18907 1.20277
1.20594 0.88504 0.87862 0.91924 0.80137 0.82017 0.84851 0.72573
0.75431 0.90722 0.94226 0.95980 0.92268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.22 9.45 71.23 0.67 -0.55 16
2 C -0.07 -1.07 5.90 -19.73 -0.12 -1.19 16
3 C -0.09 -0.99 9.70 22.25 0.22 -0.78 16
4 C -0.08 -1.12 9.40 22.30 0.21 -0.91 16
5 C -0.18 -3.91 5.45 -19.88 -0.11 -4.02 16
6 C 0.51 11.55 3.36 71.24 0.24 11.78 16
7 F -0.18 -4.44 17.30 44.97 0.78 -3.66 16
8 F -0.17 -3.36 16.46 44.97 0.74 -2.62 16
9 F -0.19 -4.86 16.46 44.97 0.74 -4.12 16
10 C -0.10 -2.64 8.07 22.40 0.18 -2.46 16
11 C 0.12 2.82 6.41 38.22 0.24 3.06 16
12 N -0.63 -15.93 4.95 -304.83 -1.51 -17.44 16
13 C 0.52 16.83 7.69 87.24 0.67 17.50 16
14 O -0.51 -18.28 13.64 -3.33 -0.05 -18.32 16
15 C 0.50 19.39 7.85 87.24 0.68 20.08 16
16 O -0.55 -23.68 16.15 -3.27 -0.05 -23.73 16
17 N -0.67 -28.42 5.06 -447.53 -2.27 -30.69 16
18 C 0.27 13.53 2.56 44.25 0.11 13.64 16
19 H 0.02 1.03 7.58 -2.38 -0.02 1.02 16
20 C -0.14 -6.69 9.26 71.98 0.67 -6.02 16
21 C -0.55 -29.06 8.73 25.60 0.22 -28.84 16
22 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16
23 C 0.02 1.12 5.30 84.65 0.45 1.57 16
24 N -0.91 -50.49 11.32 21.45 0.24 -50.24 16
25 Si 0.97 41.64 29.54 68.60 2.03 43.67 16
26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16
27 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16
28 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16
29 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16
30 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16
31 H 0.06 0.77 6.99 -2.39 -0.02 0.75 16
32 H 0.18 0.56 8.06 -2.92 -0.02 0.53 16
33 H 0.16 1.47 7.60 -2.91 -0.02 1.45 16
34 H 0.13 4.13 5.33 -2.91 -0.02 4.12 16
35 H 0.43 9.42 6.89 -92.72 -0.64 8.78 16
36 H 0.41 16.21 8.01 -92.70 -0.74 15.47 16
37 H 0.07 3.96 6.07 -2.38 -0.01 3.95 16
38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
39 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16
40 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16
Total: -1.00 -64.68 356.40 4.76 -59.92
By element:
Atomic # 1 Polarization: 24.62 SS G_CDS: -0.24 Total: 24.37 kcal
Atomic # 6 Polarization: 18.52 SS G_CDS: 4.35 Total: 22.87 kcal
Atomic # 7 Polarization: -94.83 SS G_CDS: -3.53 Total: -98.37 kcal
Atomic # 8 Polarization: -41.96 SS G_CDS: -0.10 Total: -42.05 kcal
Atomic # 9 Polarization: -12.67 SS G_CDS: 2.26 Total: -10.41 kcal
Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal
Total: -64.68 4.76 -59.92 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122844603.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -153.376 kcal
(2) G-P(sol) polarization free energy of solvation -64.680 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) -213.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds