Wall clock time and date at job start Sat Apr 11 2020 07:03:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52996 * 109.47079 * 2 1
4 4 H 1.09006 * 109.47344 * 304.99989 * 3 2 1
5 5 C 1.52997 * 109.47276 * 185.00075 * 3 2 1
6 6 N 1.46504 * 109.47425 * 185.00203 * 5 3 2
7 7 C 1.34776 * 119.99851 * 180.02562 * 6 5 3
8 8 O 1.21578 * 120.00437 * 359.97438 * 7 6 5
9 9 C 1.47622 * 119.99839 * 179.97438 * 7 6 5
10 10 N 1.31874 * 126.45441 * 0.02562 * 9 7 6
11 11 N 1.28474 * 110.15039 * 179.73332 * 10 9 7
12 12 H 0.96998 * 124.92996 * 180.23386 * 11 10 9
13 13 C 1.35727 * 110.13365 * 0.39830 * 11 10 9
14 14 C 1.35542 * 107.11540 * 359.60962 * 13 11 10
15 15 F 1.35102 * 127.24390 * 180.26564 * 14 13 11
16 16 N 1.46503 * 109.47551 * 64.99836 * 3 2 1
17 17 C 1.34776 * 120.00059 * 275.00597 * 16 3 2
18 18 O 1.21286 * 120.00093 * 359.97438 * 17 16 3
19 19 C 1.50698 * 119.99879 * 179.97438 * 17 16 3
20 20 S 1.81003 * 109.47116 * 179.97438 * 19 17 16
21 21 C 1.76197 * 100.00290 * 179.97438 * 20 19 17
22 22 H 1.08004 * 119.99807 * 0.02562 * 21 20 19
23 23 C 1.38790 * 120.00145 * 179.97438 * 21 20 19
24 24 N 1.31633 * 120.00122 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00061 * 180.02562 * 23 21 20
26 26 H 1.48500 * 109.47296 * 90.00349 * 25 23 21
27 27 H 1.48500 * 109.47267 * 210.00278 * 25 23 21
28 28 H 1.48504 * 109.46887 * 330.00013 * 25 23 21
29 29 H 1.08997 * 109.47088 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.46921 * 300.00238 * 1 2 3
31 31 H 1.09007 * 109.47062 * 60.00119 * 1 2 3
32 32 H 1.08997 * 109.47149 * 240.00392 * 2 1 3
33 33 H 1.08994 * 109.46917 * 119.99683 * 2 1 3
34 34 H 1.08996 * 109.47484 * 64.99990 * 5 3 2
35 35 H 1.08998 * 109.46892 * 305.00058 * 5 3 2
36 36 H 0.96994 * 119.99912 * 359.97438 * 6 5 3
37 37 H 1.08002 * 126.44421 * 179.87755 * 13 11 10
38 38 H 0.96999 * 119.99875 * 94.99152 * 16 3 2
39 39 H 1.08998 * 109.46826 * 299.99362 * 19 17 16
40 40 H 1.08999 * 109.47415 * 59.99540 * 19 17 16
41 41 H 0.97002 * 120.00144 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8418
5 6 3.5648 1.4444 -0.1257
6 7 4.0631 2.8168 -0.0059
7 6 5.3857 3.0630 -0.0868
8 8 6.1654 2.1462 -0.2588
9 6 5.8877 4.4461 0.0333
10 7 5.1605 5.5301 0.2210
11 7 5.9182 6.5657 0.2848
12 1 5.6068 7.4741 0.4216
13 6 7.2172 6.2045 0.1293
14 6 7.2407 4.8587 -0.0306
15 9 8.3266 4.0756 -0.2119
16 7 1.6525 2.0976 1.2518
17 6 0.4351 2.6644 1.3669
18 8 -0.3393 2.6326 0.4341
19 6 0.0363 3.3377 2.6548
20 16 -1.6421 3.9965 2.4965
21 6 -1.8444 4.7063 4.0965
22 1 -1.0445 4.6449 4.8195
23 6 -3.0313 5.3451 4.4273
24 7 -4.0061 5.4204 3.5459
25 14 -3.2455 6.0982 6.1233
26 1 -2.7821 7.5089 6.1007
27 1 -4.6794 6.0544 6.5069
28 1 -2.4453 5.3300 7.1106
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8901
32 1 1.8934 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.8499 1.0378 -1.0960
35 1 3.9954 0.8311 0.6659
36 1 3.4411 3.5484 0.1309
37 1 8.0720 6.8646 0.1365
38 1 2.2719 2.1231 1.9978
39 1 0.0673 2.6131 3.4684
40 1 0.7277 4.1530 2.8678
41 1 -4.8358 5.8665 3.7772
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001297483228.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:06
Heat of formation + Delta-G solvation = -47.094176 kcal
Electronic energy + Delta-G solvation = -26986.918908 eV
Core-core repulsion = 22751.377569 eV
Total energy + Delta-G solvation = -4235.541339 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.111 amu
Computer time = 1.49 seconds
Orbital eigenvalues (eV)
-48.97929 -43.11714 -40.08935 -39.23253 -36.46935 -34.11549 -32.46492 -32.41839
-32.29358 -31.02985 -29.45125 -28.24602 -25.51995 -24.97320 -23.08472 -22.17850
-21.48550 -20.48136 -20.34309 -19.35645 -17.96995 -17.53115 -16.86318 -16.63788
-16.43595 -16.24713 -15.88237 -15.44813 -15.23165 -15.13178 -14.83023 -14.77020
-14.30996 -14.17172 -13.59380 -13.45945 -13.13722 -13.07673 -12.94655 -12.52828
-12.29255 -11.76051 -11.53060 -11.44663 -11.20526 -11.09063 -11.04127 -10.79922
-10.75263 -10.47228 -10.09027 -9.83600 -9.48078 -9.41123 -9.29936 -9.09511
-8.90004 -8.26356 -6.52263 -6.24471 -3.94745 1.00035 1.36267 2.16827
2.72264 2.96290 3.00968 3.06181 3.19654 3.25611 3.29627 3.66509
3.73698 4.10434 4.17884 4.34961 4.40220 4.62342 4.83717 4.90363
5.02794 5.10830 5.12905 5.25216 5.42147 5.45371 5.59868 5.79262
5.84863 5.85747 5.89075 6.04634 6.10907 6.12136 6.24368 6.29241
6.57962 6.64342 7.01438 7.28367 7.56942 7.65711 7.86997 8.32494
8.57942 9.21146 10.82859
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.010293 B = 0.002692 C = 0.002216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2719.577252 B =10400.240183 C =12634.307633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.129 4.129
3 C 0.134 3.866
4 H 0.097 0.903
5 C 0.112 3.888
6 N -0.713 5.713
7 C 0.603 3.397
8 O -0.525 6.525
9 C -0.033 4.033
10 N -0.225 5.225
11 N -0.365 5.365
12 H 0.459 0.541
13 C -0.037 4.037
14 C 0.037 3.963
15 F -0.100 7.100
16 N -0.736 5.736
17 C 0.533 3.467
18 O -0.508 6.508
19 C -0.155 4.155
20 S -0.058 6.058
21 C -0.536 4.536
22 H 0.072 0.928
23 C 0.074 3.926
24 N -0.868 5.868
25 Si 0.918 3.082
26 H -0.277 1.277
27 H -0.282 1.282
28 H -0.272 1.272
29 H 0.045 0.955
30 H 0.064 0.936
31 H 0.061 0.939
32 H 0.070 0.930
33 H 0.065 0.935
34 H 0.086 0.914
35 H 0.078 0.922
36 H 0.412 0.588
37 H 0.200 0.800
38 H 0.398 0.602
39 H 0.088 0.912
40 H 0.088 0.912
41 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.189 -1.127 -7.076 23.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.168 4.168
3 C 0.029 3.971
4 H 0.115 0.885
5 C -0.011 4.011
6 N -0.365 5.365
7 C 0.387 3.613
8 O -0.398 6.398
9 C -0.195 4.195
10 N -0.063 5.063
11 N -0.082 5.082
12 H 0.306 0.694
13 C -0.182 4.182
14 C 0.007 3.993
15 F -0.078 7.078
16 N -0.391 5.391
17 C 0.320 3.680
18 O -0.382 6.382
19 C -0.305 4.305
20 S 0.169 5.831
21 C -0.684 4.684
22 H 0.090 0.910
23 C -0.135 4.135
24 N -0.503 5.503
25 Si 0.744 3.256
26 H -0.203 1.203
27 H -0.207 1.207
28 H -0.197 1.197
29 H 0.064 0.936
30 H 0.083 0.917
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.084 0.916
34 H 0.104 0.896
35 H 0.096 0.904
36 H 0.249 0.751
37 H 0.217 0.783
38 H 0.232 0.768
39 H 0.107 0.893
40 H 0.107 0.893
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 20.206 -1.525 -8.695 22.050
hybrid contribution 1.681 1.099 2.604 3.288
sum 21.886 -0.425 -6.091 22.722
Atomic orbital electron populations
1.21807 0.93986 1.00720 1.03868 1.21876 0.97816 0.94847 1.02264
1.21251 0.92144 0.94824 0.88886 0.88515 1.21770 0.92974 0.82858
1.03535 1.45796 1.06946 1.10570 1.73211 1.16682 0.82468 0.85188
0.76970 1.90856 1.56071 1.43867 1.49056 1.22143 0.91008 0.94153
1.12213 1.73714 1.22618 0.93108 1.16819 1.43084 1.03838 1.09772
1.51470 0.69416 1.22723 0.89866 0.95614 1.09967 1.17162 0.83720
0.88247 1.10157 1.91547 1.50147 1.72977 1.93166 1.46118 1.17455
1.59460 1.16104 1.20242 0.80769 0.77428 0.89582 1.90721 1.50288
1.57157 1.40034 1.23546 1.07019 1.02834 0.97147 1.85370 1.06462
1.70894 1.20369 1.22866 1.03937 1.42069 0.99522 0.90995 1.24981
0.94845 0.95576 0.98147 1.70015 1.05044 1.40964 1.34263 0.86184
0.77606 0.79344 0.82465 1.20304 1.20747 1.19698 0.93577 0.91730
0.91996 0.91101 0.91639 0.89614 0.90405 0.75133 0.78339 0.76764
0.89338 0.89334 0.92186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.94 8.52 37.16 0.32 -1.62 16
2 C -0.13 -1.30 5.61 -26.73 -0.15 -1.45 16
3 C 0.13 1.41 2.42 -67.93 -0.16 1.24 16
4 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16
5 C 0.11 1.04 5.23 -4.04 -0.02 1.02 16
6 N -0.71 -7.34 5.38 -61.32 -0.33 -7.67 16
7 C 0.60 7.44 7.82 -12.43 -0.10 7.34 16
8 O -0.52 -7.96 16.67 5.30 0.09 -7.87 16
9 C -0.03 -0.37 7.13 -82.74 -0.59 -0.96 16
10 N -0.23 -2.11 11.91 33.43 0.40 -1.71 16
11 N -0.36 -2.06 6.86 30.63 0.21 -1.85 16
12 H 0.46 0.84 8.96 -190.44 -1.71 -0.87 16
13 C -0.04 -0.21 12.06 -16.79 -0.20 -0.41 16
14 C 0.04 0.37 8.03 -39.27 -0.32 0.05 16
15 F -0.10 -1.17 17.03 2.25 0.04 -1.13 16
16 N -0.74 -8.72 4.47 -53.81 -0.24 -8.96 16
17 C 0.53 8.96 6.42 -10.99 -0.07 8.89 16
18 O -0.51 -10.26 13.00 5.55 0.07 -10.19 16
19 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16
20 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16
21 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16
22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16
23 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
24 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16
25 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16
26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
30 H 0.06 1.04 5.65 -51.93 -0.29 0.74 16
31 H 0.06 0.89 7.85 -51.93 -0.41 0.49 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.41 4.22 7.86 -40.82 -0.32 3.90 16
37 H 0.20 0.30 8.06 -52.49 -0.42 -0.13 16
38 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16
39 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16
40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16
41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 372.04 15.07 5.61 5.61
Total: -1.00 -36.84 372.04 -7.93 -44.77
By element:
Atomic # 1 Polarization: 9.36 SS G_CDS: -6.40 Total: 2.96 kcal
Atomic # 6 Polarization: -0.41 SS G_CDS: -0.87 Total: -1.28 kcal
Atomic # 7 Polarization: -45.96 SS G_CDS: 0.77 Total: -45.19 kcal
Atomic # 8 Polarization: -18.23 SS G_CDS: 0.16 Total: -18.07 kcal
Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -36.84 -7.93 -44.77 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001297483228.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.319 kcal
(2) G-P(sol) polarization free energy of solvation -36.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.162 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.094 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.49 seconds