Wall clock time and date at job start Sat Apr 11 2020 07:02:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50695 * 109.47500 * 2 1
4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1
5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2
6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3
7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4
8 8 N 1.46901 * 109.46829 * 89.97637 * 7 6 5
9 9 C 1.46898 * 110.99841 * 179.97438 * 8 7 6
10 10 C 1.53005 * 109.47304 * 179.97438 * 9 8 7
11 11 H 1.08996 * 109.47278 * 295.00685 * 10 9 8
12 12 C 1.52999 * 109.47464 * 174.99842 * 10 9 8
13 13 N 1.46501 * 109.46536 * 55.00194 * 10 9 8
14 14 C 1.34784 * 119.99731 * 205.00055 * 13 10 9
15 15 O 1.21284 * 120.00049 * 0.02562 * 14 13 10
16 16 C 1.50701 * 119.99907 * 180.02562 * 14 13 10
17 17 S 1.81000 * 109.46837 * 179.97438 * 16 14 13
18 18 C 1.76200 * 99.99716 * 179.97438 * 17 16 14
19 19 H 1.08000 * 119.99979 * 0.02562 * 18 17 16
20 20 C 1.38797 * 120.00004 * 179.97438 * 18 17 16
21 21 N 1.31630 * 120.00015 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 120.00080 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47473 * 60.00435 * 22 20 18
24 24 H 1.48501 * 109.47062 * 180.02562 * 22 20 18
25 25 H 1.48504 * 109.47255 * 299.99933 * 22 20 18
26 26 S 1.71215 * 108.61179 * 0.02562 * 6 5 4
27 27 H 1.08994 * 109.46926 * 300.00592 * 1 2 3
28 28 H 1.09001 * 109.46910 * 60.00302 * 1 2 3
29 29 H 1.08996 * 109.47439 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.47102 * 239.99217 * 2 1 3
31 31 H 1.08996 * 109.46894 * 120.00188 * 2 1 3
32 32 H 1.09000 * 109.47136 * 209.97649 * 7 6 5
33 33 H 1.09001 * 109.46989 * 329.97993 * 7 6 5
34 34 H 1.00904 * 111.00180 * 303.95307 * 8 7 6
35 35 H 1.08996 * 109.47206 * 299.99805 * 9 8 7
36 36 H 1.09003 * 109.47142 * 60.00228 * 9 8 7
37 37 H 1.08996 * 109.47562 * 300.00670 * 12 10 9
38 38 H 1.09004 * 109.46471 * 59.99986 * 12 10 9
39 39 H 1.08999 * 109.47208 * 180.02562 * 12 10 9
40 40 H 0.97000 * 120.00632 * 25.00196 * 13 10 9
41 41 H 1.09002 * 109.46750 * 299.99440 * 16 14 13
42 42 H 1.08995 * 109.47118 * 59.99782 * 16 14 13
43 43 H 0.97001 * 120.00301 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 7 2.2846 2.1326 1.0509
5 7 2.7053 3.3071 0.8483
6 6 2.8378 3.6673 -0.3875
7 6 3.3211 5.0128 -0.8643
8 7 4.7821 4.9830 -1.0150
9 6 5.2899 6.2806 -1.4800
10 6 6.8115 6.2110 -1.6241
11 1 7.2628 6.0592 -0.6436
12 6 7.3273 7.5196 -2.2260
13 7 7.1680 5.0949 -2.5037
14 6 8.3801 4.5149 -2.3989
15 8 9.1755 4.9166 -1.5760
16 6 8.7471 3.3673 -3.3040
17 16 10.4264 2.8106 -2.9219
18 6 10.5890 1.5031 -4.0917
19 1 9.7730 1.2724 -4.7606
20 6 11.7661 0.7704 -4.1545
21 7 12.7608 1.0519 -3.3397
22 14 11.9387 -0.6153 -5.3952
23 1 11.7804 -0.0729 -6.7684
24 1 13.2806 -1.2368 -5.2597
25 1 10.8922 -1.6385 -5.1434
26 16 2.3723 2.3602 -1.3906
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8934 -0.5140 -0.8900
31 1 1.8933 -0.5138 0.8899
32 1 2.8614 5.2445 -1.8250
33 1 3.0464 5.7763 -0.1364
34 1 5.2290 4.7072 -0.1534
35 1 4.8438 6.5207 -2.4451
36 1 5.0288 7.0533 -0.7568
37 1 6.8761 7.6713 -3.2065
38 1 7.0620 8.3499 -1.5716
39 1 8.4113 7.4697 -2.3291
40 1 6.5318 4.7734 -3.1615
41 1 8.0477 2.5454 -3.1504
42 1 8.7007 3.6945 -4.3427
43 1 13.5834 0.5396 -3.3832
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715969577.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:35
Heat of formation + Delta-G solvation = 14.705239 kcal
Electronic energy + Delta-G solvation = -24227.930458 eV
Core-core repulsion = 20561.282119 eV
Total energy + Delta-G solvation = -3666.648339 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.108 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.59866 -39.38353 -37.28838 -35.27934 -34.38744 -32.40102 -31.74327 -30.69289
-28.49890 -28.10438 -25.95490 -25.44942 -24.23954 -23.28909 -21.63216 -20.22814
-19.94862 -19.63391 -17.82192 -16.89395 -16.42115 -16.31327 -15.81305 -15.31463
-15.15079 -14.82387 -14.78051 -14.61621 -14.32751 -13.92494 -13.86186 -13.36451
-13.16938 -13.09779 -12.75236 -12.72521 -12.50793 -12.38953 -12.18974 -11.96802
-11.73368 -11.65338 -11.04599 -11.01885 -11.00466 -10.74687 -10.71955 -10.48391
-10.04643 -9.97215 -9.79020 -9.31790 -9.03563 -8.94181 -8.78500 -8.19472
-6.45976 -6.18690 -3.88713 0.08372 0.59184 1.07627 2.22607 3.08902
3.19382 3.24997 3.29189 3.33473 3.46218 3.73170 3.86095 4.13132
4.23480 4.37486 4.50229 4.64937 4.67997 4.80288 4.90252 5.00789
5.09932 5.16161 5.18570 5.21601 5.27571 5.31628 5.33794 5.39008
5.46946 5.57802 5.66644 5.72292 5.95660 6.00160 6.12082 6.20848
6.41322 6.73413 6.86914 7.61941 7.85821 8.24924 8.37868 8.72915
9.26378 10.88697
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.008709 B = 0.002597 C = 0.002091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3214.168258 B =10778.088049 C =13389.254014
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.046 4.046
3 C -0.019 4.019
4 N -0.261 5.261
5 N -0.256 5.256
6 C -0.020 4.020
7 C 0.141 3.859
8 N -0.682 5.682
9 C 0.053 3.947
10 C 0.146 3.854
11 H 0.086 0.914
12 C -0.162 4.162
13 N -0.721 5.721
14 C 0.533 3.467
15 O -0.523 6.523
16 C -0.152 4.152
17 S -0.061 6.061
18 C -0.535 4.535
19 H 0.072 0.928
20 C 0.073 3.927
21 N -0.868 5.868
22 Si 0.918 3.082
23 H -0.274 1.274
24 H -0.283 1.283
25 H -0.274 1.274
26 S 0.199 5.801
27 H 0.062 0.938
28 H 0.058 0.942
29 H 0.072 0.928
30 H 0.091 0.909
31 H 0.100 0.900
32 H 0.098 0.902
33 H 0.067 0.933
34 H 0.354 0.646
35 H 0.082 0.918
36 H 0.049 0.951
37 H 0.057 0.943
38 H 0.061 0.939
39 H 0.068 0.932
40 H 0.400 0.600
41 H 0.088 0.912
42 H 0.087 0.913
43 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.555 6.305 1.744 28.321
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.087 4.087
3 C -0.298 4.298
4 N -0.099 5.099
5 N -0.095 5.095
6 C -0.299 4.299
7 C 0.009 3.991
8 N -0.315 5.315
9 C -0.077 4.077
10 C 0.040 3.960
11 H 0.104 0.896
12 C -0.221 4.221
13 N -0.375 5.375
14 C 0.319 3.681
15 O -0.398 6.398
16 C -0.302 4.302
17 S 0.165 5.835
18 C -0.683 4.683
19 H 0.090 0.910
20 C -0.136 4.136
21 N -0.504 5.504
22 Si 0.744 3.256
23 H -0.200 1.200
24 H -0.208 1.208
25 H -0.200 1.200
26 S 0.443 5.557
27 H 0.081 0.919
28 H 0.077 0.923
29 H 0.091 0.909
30 H 0.110 0.890
31 H 0.118 0.882
32 H 0.116 0.884
33 H 0.085 0.915
34 H 0.173 0.827
35 H 0.100 0.900
36 H 0.067 0.933
37 H 0.076 0.924
38 H 0.080 0.920
39 H 0.087 0.913
40 H 0.234 0.766
41 H 0.107 0.893
42 H 0.106 0.894
43 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -26.035 6.740 2.911 27.050
hybrid contribution -1.132 -0.981 -1.132 1.877
sum -27.167 5.759 1.779 27.828
Atomic orbital electron populations
1.21785 0.93129 1.03001 1.02687 1.20196 0.96891 0.86512 1.05086
1.29328 1.03913 1.04330 0.92204 1.71438 1.12835 0.98771 1.26838
1.71444 1.13194 1.07684 1.17166 1.29003 1.04822 1.03353 0.92715
1.20324 0.89638 0.88026 1.01161 1.60447 1.02651 1.30145 1.38241
1.22331 0.94860 0.89440 1.01056 1.20832 0.92628 0.86981 0.95566
0.89595 1.22151 1.02901 0.96226 1.00853 1.45861 1.16689 1.35276
1.39680 1.20265 0.81037 0.82972 0.83781 1.90692 1.49275 1.63515
1.36297 1.23510 1.06905 0.98455 1.01357 1.85382 1.06645 1.41602
1.49855 1.22830 1.03699 1.19454 1.22325 0.91030 1.24988 0.94804
0.97487 0.96325 1.70010 1.04618 1.39628 1.36095 0.86237 0.77485
0.81049 0.80797 1.19955 1.20840 1.19954 1.83742 1.55930 1.04835
1.11172 0.91886 0.92325 0.90918 0.89004 0.88205 0.88380 0.91529
0.82690 0.89960 0.93251 0.92414 0.91957 0.91266 0.76571 0.89332
0.89427 0.92170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.75 9.90 37.16 0.37 -0.38 16
2 C -0.05 -0.29 6.54 -27.88 -0.18 -0.48 16
3 C -0.02 -0.18 6.78 -13.30 -0.09 -0.27 16
4 N -0.26 -3.29 11.66 32.58 0.38 -2.91 16
5 N -0.26 -3.22 11.66 32.58 0.38 -2.84 16
6 C -0.02 -0.19 7.04 -13.30 -0.09 -0.29 16
7 C 0.14 1.02 6.28 -4.97 -0.03 0.98 16
8 N -0.68 -5.79 6.21 -115.05 -0.71 -6.50 16
9 C 0.05 0.38 5.24 -3.82 -0.02 0.36 16
10 C 0.15 1.57 2.82 -67.93 -0.19 1.38 16
11 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16
12 C -0.16 -1.63 9.48 37.16 0.35 -1.27 16
13 N -0.72 -9.34 4.80 -53.80 -0.26 -9.60 16
14 C 0.53 9.89 7.81 -10.98 -0.09 9.81 16
15 O -0.52 -11.82 15.52 5.55 0.09 -11.74 16
16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16
17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16
18 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16
19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
21 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16
22 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16
23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
25 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16
26 S 0.20 1.61 23.04 -107.50 -2.48 -0.87 16
27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
34 H 0.35 3.61 8.72 -39.29 -0.34 3.27 16
35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
40 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16
41 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16
42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16
43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16
LS Contribution 395.61 15.07 5.96 5.96
Total: -1.00 -36.41 395.61 -9.25 -45.65
By element:
Atomic # 1 Polarization: 8.54 SS G_CDS: -6.55 Total: 1.99 kcal
Atomic # 6 Polarization: -6.51 SS G_CDS: 0.45 Total: -6.07 kcal
Atomic # 7 Polarization: -48.04 SS G_CDS: 0.52 Total: -47.52 kcal
Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.74 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Atomic # 16 Polarization: -0.07 SS G_CDS: -4.69 Total: -4.76 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -36.41 -9.25 -45.65 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715969577.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.360 kcal
(2) G-P(sol) polarization free energy of solvation -36.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.954 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.705 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds