Wall clock time and date at job start Sat Apr 11 2020 07:02:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50695 * 109.47500 * 2 1
4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1
5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2
6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3
7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4
8 8 N 1.46901 * 109.46829 * 89.97637 * 7 6 5
9 9 C 1.46898 * 110.99841 * 179.97438 * 8 7 6
10 10 C 1.53005 * 109.47304 * 179.97438 * 9 8 7
11 11 H 1.08996 * 109.47278 * 295.00685 * 10 9 8
12 12 C 1.52999 * 109.47464 * 174.99842 * 10 9 8
13 13 N 1.46501 * 109.46536 * 55.00194 * 10 9 8
14 14 C 1.34784 * 119.99731 * 205.00055 * 13 10 9
15 15 O 1.21284 * 120.00049 * 0.02562 * 14 13 10
16 16 C 1.50701 * 119.99907 * 180.02562 * 14 13 10
17 17 S 1.81000 * 109.46837 * 179.97438 * 16 14 13
18 18 C 1.76200 * 99.99716 * 179.97438 * 17 16 14
19 19 H 1.08000 * 119.99979 * 0.02562 * 18 17 16
20 20 C 1.38797 * 120.00004 * 179.97438 * 18 17 16
21 21 N 1.31630 * 120.00015 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 120.00080 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47473 * 60.00435 * 22 20 18
24 24 H 1.48501 * 109.47062 * 180.02562 * 22 20 18
25 25 H 1.48504 * 109.47255 * 299.99933 * 22 20 18
26 26 S 1.71215 * 108.61179 * 0.02562 * 6 5 4
27 27 H 1.08994 * 109.46926 * 300.00592 * 1 2 3
28 28 H 1.09001 * 109.46910 * 60.00302 * 1 2 3
29 29 H 1.08996 * 109.47439 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.47102 * 239.99217 * 2 1 3
31 31 H 1.08996 * 109.46894 * 120.00188 * 2 1 3
32 32 H 1.09000 * 109.47136 * 209.97649 * 7 6 5
33 33 H 1.09001 * 109.46989 * 329.97993 * 7 6 5
34 34 H 1.00904 * 111.00180 * 303.95307 * 8 7 6
35 35 H 1.08996 * 109.47206 * 299.99805 * 9 8 7
36 36 H 1.09003 * 109.47142 * 60.00228 * 9 8 7
37 37 H 1.08996 * 109.47562 * 300.00670 * 12 10 9
38 38 H 1.09004 * 109.46471 * 59.99986 * 12 10 9
39 39 H 1.08999 * 109.47208 * 180.02562 * 12 10 9
40 40 H 0.97000 * 120.00632 * 25.00196 * 13 10 9
41 41 H 1.09002 * 109.46750 * 299.99440 * 16 14 13
42 42 H 1.08995 * 109.47118 * 59.99782 * 16 14 13
43 43 H 0.97001 * 120.00301 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 7 2.2846 2.1326 1.0509
5 7 2.7053 3.3071 0.8483
6 6 2.8378 3.6673 -0.3875
7 6 3.3211 5.0128 -0.8643
8 7 4.7821 4.9830 -1.0150
9 6 5.2899 6.2806 -1.4800
10 6 6.8115 6.2110 -1.6241
11 1 7.2628 6.0592 -0.6436
12 6 7.3273 7.5196 -2.2260
13 7 7.1680 5.0949 -2.5037
14 6 8.3801 4.5149 -2.3989
15 8 9.1755 4.9166 -1.5760
16 6 8.7471 3.3673 -3.3040
17 16 10.4264 2.8106 -2.9219
18 6 10.5890 1.5031 -4.0917
19 1 9.7730 1.2724 -4.7606
20 6 11.7661 0.7704 -4.1545
21 7 12.7608 1.0519 -3.3397
22 14 11.9387 -0.6153 -5.3952
23 1 11.7804 -0.0729 -6.7684
24 1 13.2806 -1.2368 -5.2597
25 1 10.8922 -1.6385 -5.1434
26 16 2.3723 2.3602 -1.3906
27 1 -0.3633 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8934 -0.5140 -0.8900
31 1 1.8933 -0.5138 0.8899
32 1 2.8614 5.2445 -1.8250
33 1 3.0464 5.7763 -0.1364
34 1 5.2290 4.7072 -0.1534
35 1 4.8438 6.5207 -2.4451
36 1 5.0288 7.0533 -0.7568
37 1 6.8761 7.6713 -3.2065
38 1 7.0620 8.3499 -1.5716
39 1 8.4113 7.4697 -2.3291
40 1 6.5318 4.7734 -3.1615
41 1 8.0477 2.5454 -3.1504
42 1 8.7007 3.6945 -4.3427
43 1 13.5834 0.5396 -3.3832
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715969577.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:35
Heat of formation + Delta-G solvation = -13.590664 kcal
Electronic energy + Delta-G solvation = -24229.157461 eV
Core-core repulsion = 20561.282119 eV
Total energy + Delta-G solvation = -3667.875342 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 344.108 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.35457 -40.70315 -38.16228 -36.09359 -35.12856 -34.57233 -32.84452 -31.53323
-29.91483 -28.77289 -27.64334 -26.62529 -24.88053 -23.84960 -22.61996 -21.50979
-20.63839 -20.34502 -19.81333 -17.86917 -17.77271 -17.04410 -16.86901 -16.58142
-16.35730 -16.30479 -15.78211 -15.62691 -15.28085 -14.91702 -14.68270 -14.51225
-14.47081 -14.06684 -13.88685 -13.56184 -13.27330 -13.23458 -13.15615 -13.01049
-12.85670 -12.77647 -12.62788 -12.56382 -12.18482 -11.87290 -11.71322 -11.44013
-11.18237 -11.11708 -10.85846 -10.78227 -10.63432 -10.25556 -10.00015 -9.55935
-8.65029 -8.33218 -6.11227 -0.59130 -0.05588 0.37425 1.28973 1.44637
1.46325 1.48579 1.58678 1.71433 2.28394 2.38628 2.83419 3.00628
3.15841 3.35859 3.52854 3.75799 3.86974 4.04559 4.09479 4.18196
4.23387 4.30038 4.33966 4.41363 4.48409 4.54021 4.59650 4.63881
4.73571 4.75476 4.80813 4.95005 5.02078 5.08792 5.26471 5.30275
5.42419 5.61148 5.82676 6.09164 6.20760 6.65153 7.07698 7.37615
7.51202 8.75803
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.008709 B = 0.002597 C = 0.002091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3214.168258 B =10778.088049 C =13389.254014
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.049 4.049
3 C -0.028 4.028
4 N -0.303 5.303
5 N -0.294 5.294
6 C -0.029 4.029
7 C 0.144 3.856
8 N -0.692 5.692
9 C 0.064 3.936
10 C 0.143 3.857
11 H 0.057 0.943
12 C -0.157 4.157
13 N -0.694 5.694
14 C 0.534 3.466
15 O -0.572 6.572
16 C -0.127 4.127
17 S -0.155 6.155
18 C -0.546 4.546
19 H 0.083 0.917
20 C 0.012 3.988
21 N -0.913 5.913
22 Si 0.999 3.001
23 H -0.261 1.261
24 H -0.280 1.280
25 H -0.261 1.261
26 S 0.246 5.754
27 H 0.047 0.953
28 H 0.065 0.935
29 H 0.090 0.910
30 H 0.111 0.889
31 H 0.095 0.905
32 H 0.127 0.873
33 H 0.073 0.927
34 H 0.341 0.659
35 H 0.110 0.890
36 H 0.069 0.931
37 H 0.078 0.922
38 H 0.085 0.915
39 H 0.031 0.969
40 H 0.416 0.584
41 H 0.104 0.896
42 H 0.108 0.892
43 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.286 6.168 -0.864 30.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.090 4.090
3 C -0.307 4.307
4 N -0.141 5.141
5 N -0.133 5.133
6 C -0.309 4.309
7 C 0.012 3.988
8 N -0.324 5.324
9 C -0.065 4.065
10 C 0.038 3.962
11 H 0.076 0.924
12 C -0.216 4.216
13 N -0.347 5.347
14 C 0.319 3.681
15 O -0.451 6.451
16 C -0.278 4.278
17 S 0.072 5.928
18 C -0.693 4.693
19 H 0.101 0.899
20 C -0.193 4.193
21 N -0.549 5.549
22 Si 0.820 3.180
23 H -0.185 1.185
24 H -0.205 1.205
25 H -0.186 1.186
26 S 0.491 5.509
27 H 0.067 0.933
28 H 0.084 0.916
29 H 0.109 0.891
30 H 0.129 0.871
31 H 0.114 0.886
32 H 0.145 0.855
33 H 0.091 0.909
34 H 0.158 0.842
35 H 0.128 0.872
36 H 0.087 0.913
37 H 0.097 0.903
38 H 0.104 0.896
39 H 0.050 0.950
40 H 0.253 0.747
41 H 0.123 0.877
42 H 0.126 0.874
43 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -28.839 6.629 0.281 29.592
hybrid contribution -0.399 -0.864 -0.325 1.005
sum -29.237 5.765 -0.044 29.800
Atomic orbital electron populations
1.21768 0.92002 1.04081 1.02288 1.20395 0.97804 0.84986 1.05828
1.29834 1.02953 1.05399 0.92511 1.71391 1.14618 0.99448 1.28639
1.71387 1.14697 1.08225 1.18966 1.29441 1.04168 1.04741 0.92507
1.20489 0.88761 0.86889 1.02699 1.60485 1.03442 1.30847 1.37581
1.22285 0.91701 0.89488 1.03015 1.21027 0.95269 0.86270 0.93666
0.92428 1.22092 1.00506 0.96402 1.02562 1.45633 1.14732 1.34787
1.39520 1.19996 0.82307 0.82741 0.83010 1.90682 1.51185 1.64946
1.38283 1.23348 1.01945 0.99688 1.02836 1.85582 1.13288 1.42695
1.51212 1.23172 1.04356 1.19482 1.22321 0.89920 1.26150 0.94223
1.00421 0.98477 1.70186 1.05334 1.41183 1.38202 0.85002 0.77743
0.77222 0.78022 1.18516 1.20475 1.18601 1.83467 1.54779 1.03277
1.09400 0.93331 0.91641 0.89094 0.87065 0.88638 0.85535 0.90909
0.84202 0.87193 0.91287 0.90301 0.89624 0.94971 0.74704 0.87737
0.87403 0.92042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.25 9.90 71.98 0.71 -0.54 16
2 C -0.05 -0.58 6.54 29.85 0.20 -0.38 16
3 C -0.03 -0.52 6.78 88.46 0.60 0.08 16
4 N -0.30 -7.75 11.66 -50.85 -0.59 -8.34 16
5 N -0.29 -7.41 11.66 -50.85 -0.59 -8.01 16
6 C -0.03 -0.52 7.04 88.47 0.62 0.10 16
7 C 0.14 1.68 6.28 85.56 0.54 2.22 16
8 N -0.69 -10.09 6.21 -517.91 -3.22 -13.31 16
9 C 0.06 0.72 5.24 86.31 0.45 1.17 16
10 C 0.14 2.83 2.82 44.99 0.13 2.96 16
11 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16
12 C -0.16 -2.84 9.48 71.98 0.68 -2.16 16
13 N -0.69 -16.76 4.80 -442.52 -2.12 -18.89 16
14 C 0.53 19.74 7.81 87.66 0.68 20.42 16
15 O -0.57 -26.79 15.52 -3.04 -0.05 -26.84 16
16 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16
17 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16
18 C -0.55 -31.43 9.50 67.95 0.65 -30.79 16
19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16
20 C 0.01 0.68 5.49 84.86 0.47 1.15 16
21 N -0.91 -56.72 13.22 21.65 0.29 -56.44 16
22 Si 1.00 43.73 29.55 68.60 2.03 45.76 16
23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16
24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16
26 S 0.25 3.50 23.04 -56.49 -1.30 2.20 16
27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16
30 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16
31 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16
32 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16
33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.34 6.65 8.72 -89.69 -0.78 5.87 16
35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16
40 H 0.42 7.56 8.60 -92.71 -0.80 6.76 16
41 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16
42 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16
43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
Total: -1.00 -84.19 395.61 -1.10 -85.29
By element:
Atomic # 1 Polarization: 19.46 SS G_CDS: -0.54 Total: 18.92 kcal
Atomic # 6 Polarization: -16.60 SS G_CDS: 6.17 Total: -10.43 kcal
Atomic # 7 Polarization: -98.75 SS G_CDS: -6.24 Total: -104.99 kcal
Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal
Atomic # 16 Polarization: -5.24 SS G_CDS: -2.46 Total: -7.71 kcal
Total: -84.19 -1.10 -85.29 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715969577.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.699 kcal
(2) G-P(sol) polarization free energy of solvation -84.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.488 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.290 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds