Wall clock time and date at job start Sat Apr 11 2020 07:03:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31636 * 1
3 3 Si 1.86798 * 119.99829 * 2 1
4 4 H 1.48499 * 109.46989 * 270.00215 * 3 2 1
5 5 H 1.48504 * 109.47326 * 30.00208 * 3 2 1
6 6 H 1.48501 * 109.46974 * 149.99809 * 3 2 1
7 7 C 1.38803 * 119.99728 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99564 * 180.02562 * 7 2 1
9 9 S 1.76200 * 120.00273 * 0.02562 * 7 2 1
10 10 C 1.80997 * 99.99870 * 179.97438 * 9 7 2
11 11 C 1.50695 * 109.47017 * 179.97438 * 10 9 7
12 12 O 1.21285 * 119.99853 * 359.97438 * 11 10 9
13 13 N 1.34777 * 120.00012 * 180.02562 * 11 10 9
14 14 C 1.46505 * 120.00043 * 180.02562 * 13 11 10
15 15 C 1.52995 * 109.47153 * 179.97438 * 14 13 11
16 16 C 1.53001 * 109.47227 * 179.97438 * 15 14 13
17 17 N 1.46900 * 109.47174 * 180.02562 * 16 15 14
18 18 C 1.46894 * 111.00025 * 180.02562 * 17 16 15
19 19 C 1.50700 * 109.47384 * 179.97438 * 18 17 16
20 20 C 1.38224 * 119.99213 * 260.02567 * 19 18 17
21 21 C 1.38187 * 120.05295 * 179.97438 * 20 19 18
22 22 C 1.38492 * 120.02416 * 0.02562 * 21 20 19
23 23 F 1.35099 * 120.00943 * 179.97438 * 22 21 20
24 24 C 1.38397 * 119.97529 * 359.72914 * 22 21 20
25 25 C 1.38445 * 119.94721 * 0.52975 * 24 22 21
26 26 F 1.35104 * 120.01039 * 179.74070 * 25 24 22
27 27 H 0.96994 * 120.00232 * 359.97438 * 1 2 3
28 28 H 1.09006 * 109.46994 * 60.00091 * 10 9 7
29 29 H 1.08998 * 109.46982 * 300.00325 * 10 9 7
30 30 H 0.97001 * 120.00046 * 359.97438 * 13 11 10
31 31 H 1.09000 * 109.47103 * 59.99135 * 14 13 11
32 32 H 1.08999 * 109.46675 * 299.99821 * 14 13 11
33 33 H 1.09006 * 109.46808 * 60.00136 * 15 14 13
34 34 H 1.08997 * 109.47557 * 300.00625 * 15 14 13
35 35 H 1.09006 * 109.46758 * 60.00544 * 16 15 14
36 36 H 1.08992 * 109.47397 * 300.00321 * 16 15 14
37 37 H 1.00905 * 110.99897 * 56.05125 * 17 16 15
38 38 H 1.09004 * 109.47067 * 59.99889 * 18 17 16
39 39 H 1.09004 * 109.47385 * 300.00243 * 18 17 16
40 40 H 1.08009 * 119.97191 * 359.97414 * 20 19 18
41 41 H 1.07999 * 119.98601 * 180.02562 * 21 20 19
42 42 H 1.07999 * 120.03007 * 180.27174 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4478 2.6527 0.7001
6 1 3.5478 1.4402 0.7001
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 16 1.1293 -2.7280 -0.0019
10 6 2.5159 -3.8914 -0.0029
11 6 1.9874 -5.3027 -0.0036
12 8 0.7911 -5.5022 -0.0029
13 7 2.8442 -6.3431 -0.0039
14 6 2.3304 -7.7151 -0.0050
15 6 3.5024 -8.6985 -0.0058
16 6 2.9659 -10.1314 -0.0064
17 7 4.0913 -11.0756 -0.0065
18 6 3.6131 -12.4646 -0.0077
19 6 4.7929 -13.4021 -0.0084
20 6 5.2049 -13.9934 -1.1879
21 6 6.2869 -14.8529 -1.1901
22 6 6.9595 -15.1233 -0.0100
23 9 8.0170 -15.9640 -0.0124
24 6 6.5511 -14.5279 1.1707
25 6 5.4636 -13.6712 1.1726
26 9 5.0605 -13.0934 2.3254
27 1 -0.4850 0.8400 0.0004
28 1 3.1245 -3.7321 0.8872
29 1 3.1245 -3.7305 -0.8927
30 1 3.8010 -6.1835 -0.0041
31 1 1.7221 -7.8745 -0.8954
32 1 1.7214 -7.8757 0.8846
33 1 4.1110 -8.5392 0.8844
34 1 4.1112 -8.5377 -0.8955
35 1 2.3572 -10.2910 -0.8964
36 1 2.3575 -10.2919 0.8835
37 1 4.7063 -10.9053 0.7751
38 1 3.0093 -12.6402 -0.8981
39 1 3.0084 -12.6415 0.8819
40 1 4.6807 -13.7834 -2.1086
41 1 6.6082 -15.3139 -2.1124
42 1 7.0777 -14.7347 2.0906
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001154803248.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:43
Heat of formation + Delta-G solvation = -112.910515 kcal
Electronic energy + Delta-G solvation = -25000.723349 eV
Core-core repulsion = 20742.408038 eV
Total energy + Delta-G solvation = -4258.315311 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.111 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.59145 -49.55050 -39.65939 -39.17200 -37.16161 -34.99245 -32.64849 -32.42120
-31.46247 -30.61396 -28.89866 -26.15866 -25.45872 -23.90261 -23.79829 -22.20912
-21.70665 -20.27563 -18.78600 -17.85497 -17.82480 -16.89780 -16.62906 -16.29140
-16.23551 -16.10857 -15.97653 -15.84208 -15.32553 -15.00897 -14.82718 -14.79245
-14.59513 -14.38531 -13.91472 -13.40133 -13.36118 -13.09815 -12.73391 -12.60924
-12.54626 -12.32129 -11.95806 -11.86877 -11.79248 -11.68312 -11.14402 -11.05633
-11.01843 -10.75576 -9.81135 -9.69232 -9.40811 -9.32496 -9.06535 -8.93544
-8.86586 -8.23010 -6.49443 -6.21172 -3.91712 0.30289 0.40294 2.69667
3.03347 3.11099 3.22823 3.25952 3.28210 3.32156 3.61608 3.79256
3.85282 3.95076 4.08819 4.21031 4.23893 4.46992 4.65296 4.76014
4.83260 4.93209 5.00435 5.13993 5.16706 5.21469 5.22472 5.25328
5.33696 5.37759 5.42939 5.50578 5.64619 5.65788 5.85570 5.92879
5.97192 6.13586 6.14972 6.41266 6.63315 6.80112 7.60119 7.71958
8.35776 8.62419 9.24152 10.86302
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.030518 B = 0.001278 C = 0.001261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.277102 B =21902.822636 C =22203.755611
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.074 3.926
3 Si 0.919 3.081
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.272 1.272
7 C -0.536 4.536
8 H 0.073 0.927
9 S -0.061 6.061
10 C -0.153 4.153
11 C 0.531 3.469
12 O -0.519 6.519
13 N -0.739 5.739
14 C 0.123 3.877
15 C -0.129 4.129
16 C 0.061 3.939
17 N -0.684 5.684
18 C 0.098 3.902
19 C -0.124 4.124
20 C -0.042 4.042
21 C -0.163 4.163
22 C 0.129 3.871
23 F -0.131 7.131
24 C -0.192 4.192
25 C 0.134 3.866
26 F -0.129 7.129
27 H 0.268 0.732
28 H 0.089 0.911
29 H 0.090 0.910
30 H 0.398 0.602
31 H 0.066 0.934
32 H 0.064 0.936
33 H 0.068 0.932
34 H 0.079 0.921
35 H 0.080 0.920
36 H 0.037 0.963
37 H 0.343 0.657
38 H 0.091 0.909
39 H 0.047 0.953
40 H 0.147 0.853
41 H 0.144 0.856
42 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.198 -33.137 -0.624 36.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.684 4.684
8 H 0.091 0.909
9 S 0.166 5.834
10 C -0.304 4.304
11 C 0.317 3.683
12 O -0.393 6.393
13 N -0.394 5.394
14 C -0.002 4.002
15 C -0.167 4.167
16 C -0.068 4.068
17 N -0.315 5.315
18 C -0.030 4.030
19 C -0.126 4.126
20 C -0.061 4.061
21 C -0.182 4.182
22 C 0.109 3.891
23 F -0.110 7.110
24 C -0.212 4.212
25 C 0.114 3.886
26 F -0.108 7.108
27 H 0.078 0.922
28 H 0.108 0.892
29 H 0.108 0.892
30 H 0.232 0.768
31 H 0.085 0.915
32 H 0.082 0.918
33 H 0.086 0.914
34 H 0.098 0.902
35 H 0.098 0.902
36 H 0.055 0.945
37 H 0.161 0.839
38 H 0.109 0.891
39 H 0.065 0.935
40 H 0.164 0.836
41 H 0.162 0.838
42 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 12.103 -33.346 -1.253 35.497
hybrid contribution 2.377 1.143 1.206 2.900
sum 14.480 -32.204 -0.047 35.309
Atomic orbital electron populations
1.70019 1.05956 1.27450 1.46885 1.24992 0.95021 0.99019 0.94526
0.86166 0.79406 0.81563 0.78350 1.20264 1.20749 1.19705 1.22875
0.94923 0.91669 1.58939 0.90919 1.85393 1.04990 0.96334 1.96719
1.23531 1.06547 0.95401 1.04937 1.20314 0.86526 0.86318 0.75136
1.90701 1.15394 1.85645 1.47541 1.45982 1.09966 1.05489 1.77956
1.21174 0.95850 0.80778 1.02397 1.21737 0.98176 0.93295 1.03473
1.21880 0.92352 0.91084 1.01474 1.60540 1.19045 1.01601 1.50349
1.20801 0.92913 0.86842 1.02480 1.19918 0.99594 1.00967 0.92114
1.20826 0.94553 0.93202 0.97498 1.21264 0.97637 1.01583 0.97683
1.17335 0.86286 0.91466 0.93972 1.91547 1.53817 1.68388 1.97236
1.21032 0.99458 1.01206 0.99469 1.17198 0.94631 0.94921 0.81828
1.91541 1.89634 1.82447 1.47156 0.92188 0.89230 0.89193 0.76788
0.91530 0.91754 0.91354 0.90210 0.90202 0.94481 0.83917 0.89056
0.93496 0.83566 0.83794 0.83375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16
2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16
4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16
8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16
9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16
10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16
11 C 0.53 9.93 7.85 -10.99 -0.09 9.85 16
12 O -0.52 -11.85 15.86 5.55 0.09 -11.77 16
13 N -0.74 -9.70 5.56 -60.29 -0.33 -10.04 16
14 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16
15 C -0.13 -0.97 5.59 -26.73 -0.15 -1.12 16
16 C 0.06 0.42 5.69 -3.82 -0.02 0.39 16
17 N -0.68 -4.48 6.49 -115.06 -0.75 -5.23 16
18 C 0.10 0.55 5.53 -4.98 -0.03 0.52 16
19 C -0.12 -0.72 5.40 -104.55 -0.56 -1.28 16
20 C -0.04 -0.19 9.66 -39.60 -0.38 -0.57 16
21 C -0.16 -0.77 10.02 -39.51 -0.40 -1.17 16
22 C 0.13 0.79 7.30 -39.43 -0.29 0.50 16
23 F -0.13 -0.93 17.27 2.25 0.04 -0.89 16
24 C -0.19 -1.18 10.01 -39.45 -0.39 -1.57 16
25 C 0.13 0.89 7.24 -39.43 -0.29 0.60 16
26 F -0.13 -0.98 16.66 2.25 0.04 -0.95 16
27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
28 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16
29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
30 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16
31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16
37 H 0.34 2.28 8.72 -39.29 -0.34 1.94 16
38 H 0.09 0.42 8.00 -51.93 -0.42 0.00 16
39 H 0.05 0.28 7.94 -51.93 -0.41 -0.14 16
40 H 0.15 0.38 8.04 -52.48 -0.42 -0.04 16
41 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16
42 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16
LS Contribution 386.16 15.07 5.82 5.82
Total: -1.00 -34.77 386.16 -9.51 -44.28
By element:
Atomic # 1 Polarization: 5.85 SS G_CDS: -5.71 Total: 0.14 kcal
Atomic # 6 Polarization: -6.21 SS G_CDS: -2.20 Total: -8.41 kcal
Atomic # 7 Polarization: -40.40 SS G_CDS: -0.35 Total: -40.75 kcal
Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal
Atomic # 9 Polarization: -1.91 SS G_CDS: 0.08 Total: -1.83 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -34.77 -9.51 -44.28 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001154803248.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.635 kcal
(2) G-P(sol) polarization free energy of solvation -34.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds