Wall clock time and date at job start Sat Apr 11 2020 07:03:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46495 * 120.00340 * 2 1
4 4 C 1.52994 * 109.47464 * 270.00244 * 3 2 1
5 5 O 1.42905 * 109.47134 * 64.99922 * 4 3 2
6 6 C 1.42896 * 114.00087 * 180.02562 * 5 4 3
7 7 C 1.53001 * 109.47111 * 179.97438 * 6 5 4
8 8 N 1.46497 * 109.46940 * 64.99957 * 7 6 5
9 9 C 1.36943 * 120.00005 * 180.02562 * 8 7 6
10 10 H 1.08003 * 119.99618 * 359.97438 * 9 8 7
11 11 C 1.38809 * 120.00015 * 179.97438 * 9 8 7
12 12 N 1.31622 * 120.00098 * 359.97438 * 11 9 8
13 13 Si 1.86797 * 119.99846 * 179.97438 * 11 9 8
14 14 H 1.48503 * 109.47070 * 60.00150 * 13 11 9
15 15 H 1.48508 * 109.47208 * 179.97438 * 13 11 9
16 16 H 1.48491 * 109.47462 * 299.99951 * 13 11 9
17 17 C 1.34780 * 119.99863 * 180.02562 * 2 1 3
18 18 O 1.21562 * 120.00017 * 175.63180 * 17 2 1
19 19 C 1.47697 * 119.99841 * 355.62139 * 17 2 1
20 20 C 1.39672 * 120.15819 * 47.95601 * 19 17 2
21 21 C 1.37855 * 119.90418 * 179.76097 * 20 19 17
22 22 C 1.38457 * 120.22830 * 0.51743 * 21 20 19
23 23 C 1.38302 * 120.32489 * 359.73827 * 22 21 20
24 24 Cl 1.73602 * 119.95239 * 179.97438 * 23 22 21
25 25 C 1.38442 * 120.09162 * 0.02562 * 23 22 21
26 26 F 1.35100 * 120.11475 * 180.02562 * 25 23 22
27 27 H 1.09001 * 109.46979 * 94.79713 * 1 2 3
28 28 H 1.08997 * 109.47241 * 214.79570 * 1 2 3
29 29 H 1.08998 * 109.46858 * 334.79391 * 1 2 3
30 30 H 1.09003 * 109.47109 * 30.00325 * 3 2 1
31 31 H 1.09006 * 109.47259 * 149.99749 * 3 2 1
32 32 H 1.08996 * 109.47506 * 184.99662 * 4 3 2
33 33 H 1.08998 * 109.47371 * 305.00099 * 4 3 2
34 34 H 1.09000 * 109.46810 * 299.99842 * 6 5 4
35 35 H 1.08997 * 109.47319 * 59.99520 * 6 5 4
36 36 H 1.09009 * 109.46979 * 184.99655 * 7 6 5
37 37 H 1.08996 * 109.47134 * 304.99793 * 7 6 5
38 38 H 0.97002 * 120.00354 * 359.97438 * 8 7 6
39 39 H 0.96996 * 120.00062 * 179.97438 * 12 11 9
40 40 H 1.08002 * 120.04938 * 0.02562 * 20 19 17
41 41 H 1.07999 * 119.89035 * 180.25144 * 21 20 19
42 42 H 1.07998 * 119.83911 * 179.76018 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2686 0.0000
4 6 2.4526 1.7104 -1.4424
5 8 1.2061 1.9936 -2.0813
6 6 1.3324 2.4166 -3.4404
7 6 -0.0566 2.6898 -4.0207
8 7 -0.6656 3.8216 -3.3176
9 6 -1.9182 4.2509 -3.6669
10 1 -2.4569 3.7554 -4.4611
11 6 -2.4954 5.3230 -3.0004
12 7 -1.8391 5.9265 -2.0322
13 14 -4.2037 5.9090 -3.4774
14 1 -5.1769 4.8033 -3.2890
15 1 -4.5898 7.0590 -2.6206
16 1 -4.2028 6.3304 -4.9013
17 6 2.1389 -1.1672 -0.0005
18 8 3.3519 -1.1688 -0.0807
19 6 1.4036 -2.4445 0.0966
20 6 0.2956 -2.6801 -0.7205
21 6 -0.3839 -3.8761 -0.6290
22 6 0.0217 -4.8406 0.2778
23 6 1.1143 -4.6152 1.0951
24 17 1.6140 -5.8309 2.2291
25 6 1.8094 -3.4208 1.0110
26 9 2.8771 -3.2003 1.8089
27 1 -0.3633 -0.0859 -1.0241
28 1 -0.3633 -0.8439 0.5864
29 1 -0.3633 0.9298 0.4377
30 1 1.6086 2.0283 0.5139
31 1 3.1500 1.1383 0.5139
32 1 3.0733 2.6063 -1.4437
33 1 2.9642 0.9131 -1.9815
34 1 1.9301 3.3271 -3.4834
35 1 1.8207 1.6337 -4.0206
36 1 0.0327 2.9263 -5.0811
37 1 -0.6824 1.8059 -3.8970
38 1 -0.1820 4.2664 -2.6040
39 1 -2.2423 6.6759 -1.5666
40 1 -0.0258 -1.9282 -1.4260
41 1 -1.2382 -4.0597 -1.2637
42 1 -0.5176 -5.7738 0.3469
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001284874431.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:13
Heat of formation + Delta-G solvation = -81.777922 kcal
Electronic energy + Delta-G solvation = -27465.394099 eV
Core-core repulsion = 23194.012302 eV
Total energy + Delta-G solvation = -4271.381796 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.109 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-49.30680 -40.57853 -38.91895 -37.72141 -36.94604 -35.71438 -34.40572 -32.21838
-31.36515 -30.96149 -29.71964 -27.64542 -26.73306 -24.61734 -23.51996 -23.36297
-22.53703 -21.15471 -20.00260 -18.10638 -17.66155 -17.22635 -17.12099 -16.77991
-16.29889 -16.06224 -15.73616 -15.44226 -15.22733 -14.99873 -14.53723 -13.95795
-13.93140 -13.71052 -13.44923 -13.18681 -13.13010 -12.95152 -12.70444 -12.68384
-12.53797 -12.01512 -11.95446 -11.70628 -11.67879 -11.50616 -11.35636 -10.92230
-10.79776 -10.52979 -10.17746 -10.05449 -9.71288 -9.47176 -9.25812 -9.20069
-8.88321 -8.78128 -6.89651 -5.74415 -3.02652 0.25864 0.47752 1.48919
2.35486 2.72790 3.02227 3.43782 3.48172 3.49325 3.55958 3.96615
4.01581 4.31595 4.37726 4.59827 4.60333 4.86378 5.04204 5.12768
5.24023 5.30793 5.33549 5.43806 5.48613 5.51860 5.54916 5.56639
5.61273 5.69308 5.70915 5.82086 5.86305 5.93739 6.07556 6.33421
6.35248 6.59079 6.72366 7.14407 7.56192 7.69519 7.88226 8.44256
9.55676 10.14321 10.50278 11.48312
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.016894 B = 0.002285 C = 0.002141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.001626 B =12249.908546 C =13074.386915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.594 5.594
3 C 0.120 3.880
4 C 0.044 3.956
5 O -0.370 6.370
6 C 0.058 3.942
7 C 0.156 3.844
8 N -0.727 5.727
9 C -0.239 4.239
10 H 0.068 0.932
11 C -0.014 4.014
12 N -0.932 5.932
13 Si 0.907 3.093
14 H -0.286 1.286
15 H -0.291 1.291
16 H -0.287 1.287
17 C 0.559 3.441
18 O -0.527 6.527
19 C -0.149 4.149
20 C -0.054 4.054
21 C -0.121 4.121
22 C -0.064 4.064
23 C -0.084 4.084
24 Cl -0.045 7.045
25 C 0.156 3.844
26 F -0.112 7.112
27 H 0.069 0.931
28 H 0.065 0.935
29 H 0.084 0.916
30 H 0.094 0.906
31 H 0.096 0.904
32 H 0.058 0.942
33 H 0.048 0.952
34 H 0.048 0.952
35 H 0.042 0.958
36 H 0.031 0.969
37 H 0.025 0.975
38 H 0.387 0.613
39 H 0.255 0.745
40 H 0.152 0.848
41 H 0.148 0.852
42 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.009 -22.617 6.363 24.252
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.326 5.326
3 C -0.002 4.002
4 C -0.034 4.034
5 O -0.289 6.289
6 C -0.018 4.018
7 C 0.028 3.972
8 N -0.372 5.372
9 C -0.370 4.370
10 H 0.086 0.914
11 C -0.210 4.210
12 N -0.581 5.581
13 Si 0.738 3.262
14 H -0.213 1.213
15 H -0.217 1.217
16 H -0.213 1.213
17 C 0.346 3.654
18 O -0.404 6.404
19 C -0.153 4.153
20 C -0.073 4.073
21 C -0.140 4.140
22 C -0.082 4.082
23 C -0.111 4.111
24 Cl -0.016 7.016
25 C 0.135 3.865
26 F -0.090 7.090
27 H 0.088 0.912
28 H 0.084 0.916
29 H 0.102 0.898
30 H 0.113 0.887
31 H 0.114 0.886
32 H 0.076 0.924
33 H 0.066 0.934
34 H 0.066 0.934
35 H 0.060 0.940
36 H 0.049 0.951
37 H 0.042 0.958
38 H 0.221 0.779
39 H 0.065 0.935
40 H 0.169 0.831
41 H 0.166 0.834
42 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 6.410 -22.680 6.483 24.444
hybrid contribution -0.383 0.490 0.039 0.623
sum 6.027 -22.190 6.522 23.901
Atomic orbital electron populations
1.22061 0.78180 1.03516 1.02703 1.47652 1.07845 1.05253 1.71843
1.21647 0.98283 0.84200 0.96046 1.22845 0.87637 0.99203 0.93719
1.88002 1.27739 1.87512 1.25682 1.22779 0.99262 0.97476 0.82326
1.20677 0.90177 0.91858 0.94498 1.42280 1.17705 1.34879 1.42290
1.19183 0.92642 1.10861 1.14341 0.91353 1.24729 0.98599 0.98933
0.98733 1.69659 1.37843 1.24915 1.25692 0.86280 0.84397 0.78018
0.77543 1.21318 1.21721 1.21338 1.17944 0.86918 0.83239 0.77296
1.90821 1.13197 1.87005 1.49341 1.19955 0.99473 0.95631 1.00262
1.21590 0.91344 0.97791 0.96529 1.21198 1.01046 0.92731 0.98983
1.21187 0.93576 1.00406 0.93067 1.20885 0.99863 0.91153 0.99236
1.98401 1.90825 1.53277 1.59104 1.17288 0.85652 0.92467 0.91083
1.91601 1.52115 1.94613 1.70650 0.91209 0.91633 0.89753 0.88729
0.88582 0.92416 0.93414 0.93381 0.94029 0.95133 0.95756 0.77924
0.93535 0.83053 0.83386 0.83449
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.84 8.69 59.85 0.52 1.36 16
2 N -0.59 -7.40 2.84 -182.75 -0.52 -7.92 16
3 C 0.12 1.51 5.82 -4.05 -0.02 1.49 16
4 C 0.04 0.60 6.28 37.15 0.23 0.84 16
5 O -0.37 -6.15 9.84 -35.23 -0.35 -6.50 16
6 C 0.06 0.96 6.07 37.16 0.23 1.19 16
7 C 0.16 3.11 6.65 -4.04 -0.03 3.08 16
8 N -0.73 -18.41 5.55 -59.91 -0.33 -18.74 16
9 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16
10 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16
11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16
12 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16
13 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16
14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
17 C 0.56 7.64 7.02 -12.39 -0.09 7.56 16
18 O -0.53 -8.87 16.24 5.31 0.09 -8.78 16
19 C -0.15 -1.67 4.93 -104.92 -0.52 -2.19 16
20 C -0.05 -0.45 7.75 -39.19 -0.30 -0.75 16
21 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16
22 C -0.06 -0.42 9.82 -39.48 -0.39 -0.81 16
23 C -0.08 -0.77 6.32 -39.48 -0.25 -1.02 16
24 Cl -0.05 -0.40 28.61 -51.86 -1.48 -1.89 16
25 C 0.16 1.80 7.23 -38.93 -0.28 1.52 16
26 F -0.11 -1.52 16.06 2.25 0.04 -1.48 16
27 H 0.07 0.77 7.04 -51.93 -0.37 0.40 16
28 H 0.07 0.58 6.23 -51.93 -0.32 0.25 16
29 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16
30 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16
31 H 0.10 1.16 7.49 -51.93 -0.39 0.77 16
32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16
37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.39 10.42 7.67 -40.82 -0.31 10.11 16
39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
40 H 0.15 1.14 6.21 -52.49 -0.33 0.82 16
41 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16
42 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16
LS Contribution 376.60 15.07 5.68 5.68
Total: -1.00 -33.81 376.60 -8.18 -41.99
By element:
Atomic # 1 Polarization: 9.49 SS G_CDS: -5.46 Total: 4.03 kcal
Atomic # 6 Polarization: 5.35 SS G_CDS: -1.54 Total: 3.81 kcal
Atomic # 7 Polarization: -53.87 SS G_CDS: -0.13 Total: -54.00 kcal
Atomic # 8 Polarization: -15.02 SS G_CDS: -0.26 Total: -15.29 kcal
Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal
Atomic # 17 Polarization: -0.40 SS G_CDS: -1.48 Total: -1.89 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -33.81 -8.18 -41.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001284874431.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.784 kcal
(2) G-P(sol) polarization free energy of solvation -33.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds