Wall clock time and date at job start Sat Apr 11 2020 07:03:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46495 * 120.00340 * 2 1
4 4 C 1.52994 * 109.47464 * 270.00244 * 3 2 1
5 5 O 1.42905 * 109.47134 * 64.99922 * 4 3 2
6 6 C 1.42896 * 114.00087 * 180.02562 * 5 4 3
7 7 C 1.53001 * 109.47111 * 179.97438 * 6 5 4
8 8 N 1.46497 * 109.46940 * 64.99957 * 7 6 5
9 9 C 1.36943 * 120.00005 * 180.02562 * 8 7 6
10 10 H 1.08003 * 119.99618 * 359.97438 * 9 8 7
11 11 C 1.38809 * 120.00015 * 179.97438 * 9 8 7
12 12 N 1.31622 * 120.00098 * 359.97438 * 11 9 8
13 13 Si 1.86797 * 119.99846 * 179.97438 * 11 9 8
14 14 H 1.48503 * 109.47070 * 60.00150 * 13 11 9
15 15 H 1.48508 * 109.47208 * 179.97438 * 13 11 9
16 16 H 1.48491 * 109.47462 * 299.99951 * 13 11 9
17 17 C 1.34780 * 119.99863 * 180.02562 * 2 1 3
18 18 O 1.21562 * 120.00017 * 175.63180 * 17 2 1
19 19 C 1.47697 * 119.99841 * 355.62139 * 17 2 1
20 20 C 1.39672 * 120.15819 * 47.95601 * 19 17 2
21 21 C 1.37855 * 119.90418 * 179.76097 * 20 19 17
22 22 C 1.38457 * 120.22830 * 0.51743 * 21 20 19
23 23 C 1.38302 * 120.32489 * 359.73827 * 22 21 20
24 24 Cl 1.73602 * 119.95239 * 179.97438 * 23 22 21
25 25 C 1.38442 * 120.09162 * 0.02562 * 23 22 21
26 26 F 1.35100 * 120.11475 * 180.02562 * 25 23 22
27 27 H 1.09001 * 109.46979 * 94.79713 * 1 2 3
28 28 H 1.08997 * 109.47241 * 214.79570 * 1 2 3
29 29 H 1.08998 * 109.46858 * 334.79391 * 1 2 3
30 30 H 1.09003 * 109.47109 * 30.00325 * 3 2 1
31 31 H 1.09006 * 109.47259 * 149.99749 * 3 2 1
32 32 H 1.08996 * 109.47506 * 184.99662 * 4 3 2
33 33 H 1.08998 * 109.47371 * 305.00099 * 4 3 2
34 34 H 1.09000 * 109.46810 * 299.99842 * 6 5 4
35 35 H 1.08997 * 109.47319 * 59.99520 * 6 5 4
36 36 H 1.09009 * 109.46979 * 184.99655 * 7 6 5
37 37 H 1.08996 * 109.47134 * 304.99793 * 7 6 5
38 38 H 0.97002 * 120.00354 * 359.97438 * 8 7 6
39 39 H 0.96996 * 120.00062 * 179.97438 * 12 11 9
40 40 H 1.08002 * 120.04938 * 0.02562 * 20 19 17
41 41 H 1.07999 * 119.89035 * 180.25144 * 21 20 19
42 42 H 1.07998 * 119.83911 * 179.76018 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2686 0.0000
4 6 2.4526 1.7104 -1.4424
5 8 1.2061 1.9936 -2.0813
6 6 1.3324 2.4166 -3.4404
7 6 -0.0566 2.6898 -4.0207
8 7 -0.6656 3.8216 -3.3176
9 6 -1.9182 4.2509 -3.6669
10 1 -2.4569 3.7554 -4.4611
11 6 -2.4954 5.3230 -3.0004
12 7 -1.8391 5.9265 -2.0322
13 14 -4.2037 5.9090 -3.4774
14 1 -5.1769 4.8033 -3.2890
15 1 -4.5898 7.0590 -2.6206
16 1 -4.2028 6.3304 -4.9013
17 6 2.1389 -1.1672 -0.0005
18 8 3.3519 -1.1688 -0.0807
19 6 1.4036 -2.4445 0.0966
20 6 0.2956 -2.6801 -0.7205
21 6 -0.3839 -3.8761 -0.6290
22 6 0.0217 -4.8406 0.2778
23 6 1.1143 -4.6152 1.0951
24 17 1.6140 -5.8309 2.2291
25 6 1.8094 -3.4208 1.0110
26 9 2.8771 -3.2003 1.8089
27 1 -0.3633 -0.0859 -1.0241
28 1 -0.3633 -0.8439 0.5864
29 1 -0.3633 0.9298 0.4377
30 1 1.6086 2.0283 0.5139
31 1 3.1500 1.1383 0.5139
32 1 3.0733 2.6063 -1.4437
33 1 2.9642 0.9131 -1.9815
34 1 1.9301 3.3271 -3.4834
35 1 1.8207 1.6337 -4.0206
36 1 0.0327 2.9263 -5.0811
37 1 -0.6824 1.8059 -3.8970
38 1 -0.1820 4.2664 -2.6040
39 1 -2.2423 6.6759 -1.5666
40 1 -0.0258 -1.9282 -1.4260
41 1 -1.2382 -4.0597 -1.2637
42 1 -0.5176 -5.7738 0.3469
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001284874431.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:03:12
Heat of formation + Delta-G solvation = -103.327898 kcal
Electronic energy + Delta-G solvation = -27466.328576 eV
Core-core repulsion = 23194.012302 eV
Total energy + Delta-G solvation = -4272.316274 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 344.109 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-50.19340 -41.49839 -39.71879 -38.96792 -37.63702 -36.89719 -36.14818 -33.50277
-32.77636 -31.62725 -30.87384 -29.23619 -27.69936 -25.61096 -25.34852 -24.10068
-23.41880 -22.75861 -20.92027 -19.20986 -18.93132 -18.52643 -18.02418 -17.75875
-17.46680 -17.06298 -16.80126 -16.51274 -16.39682 -16.08216 -15.71291 -15.45436
-15.18185 -14.70247 -14.55991 -14.48793 -14.28880 -14.12060 -13.91654 -13.49631
-13.37180 -13.19421 -13.11324 -12.80000 -12.70833 -12.61485 -12.55743 -12.43967
-12.19531 -12.15090 -11.88723 -11.67552 -11.19543 -10.91786 -10.51017 -10.18036
-9.89923 -9.79462 -8.94386 -7.89429 -5.17823 -0.43363 -0.19387 0.80715
1.42732 1.50671 1.53542 1.59635 1.81362 2.31301 2.60231 2.76208
2.84043 3.16817 3.44379 3.66818 3.76131 3.97911 4.02742 4.04342
4.06758 4.22871 4.29539 4.32167 4.47283 4.48813 4.52291 4.62418
4.66734 4.69404 4.71381 4.77923 4.92904 4.99372 5.03591 5.11491
5.16952 5.34941 5.50469 5.52947 6.14845 6.30374 6.34801 6.86799
7.38732 8.15057 8.39076 9.33934
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.016894 B = 0.002285 C = 0.002141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.001626 B =12249.908546 C =13074.386915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.080 3.920
2 N -0.593 5.593
3 C 0.119 3.881
4 C 0.048 3.952
5 O -0.388 6.388
6 C 0.066 3.934
7 C 0.153 3.847
8 N -0.740 5.740
9 C -0.243 4.243
10 H 0.077 0.923
11 C -0.076 4.076
12 N -0.969 5.969
13 Si 0.973 3.027
14 H -0.276 1.276
15 H -0.298 1.298
16 H -0.279 1.279
17 C 0.556 3.444
18 O -0.569 6.569
19 C -0.167 4.167
20 C -0.053 4.053
21 C -0.102 4.102
22 C -0.050 4.050
23 C -0.089 4.089
24 Cl -0.047 7.047
25 C 0.127 3.873
26 F -0.134 7.134
27 H 0.070 0.930
28 H 0.086 0.914
29 H 0.075 0.925
30 H 0.098 0.902
31 H 0.098 0.902
32 H 0.067 0.933
33 H 0.045 0.955
34 H 0.045 0.955
35 H 0.071 0.929
36 H 0.041 0.959
37 H 0.028 0.972
38 H 0.375 0.625
39 H 0.250 0.750
40 H 0.160 0.840
41 H 0.187 0.813
42 H 0.181 0.819
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.059 -24.357 5.141 25.223
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.323 5.323
3 C -0.003 4.003
4 C -0.030 4.030
5 O -0.307 6.307
6 C -0.011 4.011
7 C 0.026 3.974
8 N -0.383 5.383
9 C -0.375 4.375
10 H 0.095 0.905
11 C -0.268 4.268
12 N -0.620 5.620
13 Si 0.802 3.198
14 H -0.202 1.202
15 H -0.224 1.224
16 H -0.205 1.205
17 C 0.344 3.656
18 O -0.450 6.450
19 C -0.171 4.171
20 C -0.071 4.071
21 C -0.120 4.120
22 C -0.068 4.068
23 C -0.117 4.117
24 Cl -0.018 7.018
25 C 0.106 3.894
26 F -0.113 7.113
27 H 0.088 0.912
28 H 0.105 0.895
29 H 0.094 0.906
30 H 0.116 0.884
31 H 0.116 0.884
32 H 0.085 0.915
33 H 0.063 0.937
34 H 0.063 0.937
35 H 0.089 0.911
36 H 0.059 0.941
37 H 0.046 0.954
38 H 0.207 0.793
39 H 0.059 0.941
40 H 0.177 0.823
41 H 0.204 0.796
42 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges 4.443 -24.455 5.229 25.399
hybrid contribution 0.223 0.938 0.374 1.034
sum 4.666 -23.517 5.603 24.621
Atomic orbital electron populations
1.22125 0.77077 1.03986 1.03021 1.47743 1.08535 1.04965 1.71106
1.21649 0.98630 0.84531 0.95522 1.22890 0.86698 0.99489 0.93873
1.87968 1.29309 1.87599 1.25825 1.22651 0.97200 0.98439 0.82779
1.20854 0.91798 0.90069 0.94666 1.42484 1.17244 1.36194 1.42389
1.19612 0.93550 1.10482 1.13869 0.90548 1.25553 1.02483 0.99604
0.99197 1.69825 1.39502 1.25519 1.27161 0.85224 0.80062 0.77322
0.77215 1.20196 1.22409 1.20507 1.18373 0.86607 0.84243 0.76353
1.90783 1.15030 1.87702 1.51438 1.19861 1.00839 0.94582 1.01844
1.21766 0.90435 0.99042 0.95881 1.21630 1.01023 0.91100 0.98258
1.21632 0.92144 1.01581 0.91491 1.21064 1.00463 0.90391 0.99793
1.98399 1.91028 1.53037 1.59359 1.17608 0.86034 0.93815 0.91919
1.91534 1.53391 1.94900 1.71437 0.91158 0.89543 0.90604 0.88410
0.88421 0.91514 0.93662 0.93681 0.91050 0.94127 0.95398 0.79313
0.94143 0.82253 0.79554 0.80216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.65 8.69 127.77 1.11 2.76 16
2 N -0.59 -14.79 2.84 -850.37 -2.41 -17.20 16
3 C 0.12 3.02 5.82 86.38 0.50 3.53 16
4 C 0.05 1.30 6.28 71.98 0.45 1.76 16
5 O -0.39 -12.58 9.84 -148.98 -1.47 -14.04 16
6 C 0.07 2.08 6.07 71.98 0.44 2.52 16
7 C 0.15 5.88 6.65 86.38 0.57 6.45 16
8 N -0.74 -37.17 5.55 -343.45 -1.91 -39.08 16
9 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16
10 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16
11 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16
12 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16
13 Si 0.97 45.25 29.55 68.60 2.03 47.28 16
14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16
15 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16
16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
17 C 0.56 15.46 7.02 86.74 0.61 16.07 16
18 O -0.57 -19.98 16.24 -3.91 -0.06 -20.04 16
19 C -0.17 -3.68 4.93 -20.06 -0.10 -3.78 16
20 C -0.05 -0.76 7.75 22.53 0.17 -0.58 16
21 C -0.10 -0.86 10.03 22.23 0.22 -0.63 16
22 C -0.05 -0.49 9.82 22.34 0.22 -0.27 16
23 C -0.09 -1.53 6.32 22.33 0.14 -1.39 16
24 Cl -0.05 -0.80 28.61 -2.72 -0.08 -0.88 16
25 C 0.13 2.93 7.23 22.69 0.16 3.10 16
26 F -0.13 -3.84 16.06 44.97 0.72 -3.12 16
27 H 0.07 1.45 7.04 -2.39 -0.02 1.44 16
28 H 0.09 1.40 6.23 -2.39 -0.01 1.39 16
29 H 0.08 1.70 7.84 -2.39 -0.02 1.69 16
30 H 0.10 2.40 7.86 -2.39 -0.02 2.38 16
31 H 0.10 2.44 7.49 -2.38 -0.02 2.43 16
32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
36 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16
37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.38 20.37 7.67 -92.71 -0.71 19.66 16
39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16
40 H 0.16 2.01 6.21 -2.91 -0.02 1.99 16
41 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16
42 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16
Total: -1.00 -74.07 376.60 3.27 -70.81
By element:
Atomic # 1 Polarization: 21.37 SS G_CDS: 0.35 Total: 21.71 kcal
Atomic # 6 Polarization: 7.34 SS G_CDS: 5.81 Total: 13.16 kcal
Atomic # 7 Polarization: -110.83 SS G_CDS: -4.04 Total: -114.87 kcal
Atomic # 8 Polarization: -32.56 SS G_CDS: -1.53 Total: -34.09 kcal
Atomic # 9 Polarization: -3.84 SS G_CDS: 0.72 Total: -3.12 kcal
Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal
Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal
Total: -74.07 3.27 -70.81 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001284874431.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.522 kcal
(2) G-P(sol) polarization free energy of solvation -74.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.328 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds